Properties
| Property Name | Value |
|---|
| TranscriptId | 552829 |
| Track | FilteredModels2 |
| ProteinId | 552743 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:218560..220647 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3400 ID=mRNA_3400|Name=jgi.p|Nanoce1779_2|552743|organism=Nannochloropsis oceanica|type=mRNA|length=1735bp
GGGGAGGAAAGGCGGGAGGGGGGGGTAGTTCCGCGGGGGGGCTACCCAAG
ATAGTGACAGAGGAGGATGGGGCTTTCCACCTCCTGTCGCTCGAAGGGTT
GGAAACGGCCTTGGGGATGGTGTGCAAGACCAGCGTGCCGCGCCCGGGGA
ACCCGATCTCGAGGACGAAGGAGGAGGTGACGGCCTTGGCGCAGAACAGG
CACGAGCACGCCCTGGTCCCTAACGTGATCTCCCCGACTGATATTGGTGT
GACGTACCAAGAAATCGGTGGCTTGGCCGATGTGAAGGAGACGCTGAGGC
AGTGTGTGACGTACCCCCTGCGGTTTCCTCATTTGTACAGTGAGGGGATC
GCGGCCGACTCGGTCAAGGGCGTGTTGTTGTTTGGACCTCCGGGGACGGG
CAAAACGATGCTGGCCAAGGCGGTCGCGACCGAGGGAGGGGCGACCTTCC
TCTCGGTGGACGCCTCGGTAATTGAGAGCAAATGGTTGGGGGAGAGCGAG
AAGAACGCTAAGGCCGTTTTTACCCTGGCGCGACGCCTGGCCCCGTGCGT
GATTTATCTGGACGAGGTGGACTCCATTTTGAGCAGTCGGGACCAGGGGG
AAGACACCAAGTACAACACCATTACGAGCGTCAAGACGACCTTCATGCAG
GAGTGGGACGGGCTGCGGACGACGAGCGACCGGGTGATTGTCGTGGCGAG
CACCAACAGGCCTTATGCATTGGACCAGGCGGTGTTGCGGAGAATGCCAA
GGCGGATTTTAGTGGACCTACCCGACCAAGCGACGAGGGAGGATATGTTG
CACAAGATTCTCTCTTCCAACCGTGTCGCACCCGCCGTGAATCTTACGAG
CATCGCGAGGCGTCTAGACGGCTACACGGGAAGTGACATCAGGGAGGTTT
GCCGCGAGGCAGTCGTGCGAATCGCGCACGAAGAGAGCAAGAAACTGGAT
GAGGCACAGGGGGTAGAGGTAGGGTCATTGGGACAACGGTTAAGGCCCGT
GGAAAAAGCTGATTTTGACGCGGCGTTGGAGAAATTGAGTGCGTCCGTGG
CGGCGAGGGGAAGGGAGCTGGAGCGGGTAAGGGAGTGGAACAACCAGTTT
GGGGAGGTGAGGAAGAAGGTGAGGCCACCGCATATGTCCATGTATGTGTA
GTGCGGTCCAAAGTGGTGTAGCAGGACTACCCTCCCTTCCTCCCCTCTGC
GCTCACTTTATCCCTCCCCTTTTGCTCAAGCCGGGGGGATCAAGAGGACG
AGGGAGGGGAAAAGGGGGCATGGGAGGAGCGAGAAAGAGGAAAAATATAG
GTCTACTTCGAAGGCAGAGAAAATTAGGGATAGCTGTATTACGTAAGGGA
AGGTTGGGGTGGAGGGAGGAAGCGAGGGTGGAAGGGGGGAAAGATGGAGT
GTGAAGTACTTTCTATAAATGCACGAAAGGTAGGTTCAGGTATTAGGAGA
CTCAAAAGAGGTGGAACTCGAGAGATAGCACAGATTGTTGGTATGTAAAT
ACAACACCGTTGGGGAGGGACTGATGGAGTGGGGGAAGGACACTCGGGTG
GAGACAGTAATGGAAGAGCAAATATGCATCAACATAACCACTATCTCAGG
GAAGCAGGGAGGGTAGACCGTGCCGAGTGCGTGTAGGGTAGCAAGCAGCG
GTGGAGAAGGAGTATGAAATCAATGCAACGCGTGCGTGGGCAATACCACA
ACAATAAAGAAAACAAGACGATGCCACAATGTGCA back to topprotein sequence of jgi.p|Nanoce1779_2|552743 >mRNA_3400-protein ID=mRNA_3400-protein|Name=jgi.p|Nanoce1779_2|552743|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MVCKTSVPRPGNPISRTKEEVTALAQNRHEHALVPNVISPTDIGVTYQEI
GGLADVKETLRQCVTYPLRFPHLYSEGIAADSVKGVLLFGPPGTGKTMLA
KAVATEGGATFLSVDASVIESKWLGESEKNAKAVFTLARRLAPCVIYLDE
VDSILSSRDQGEDTKYNTITSVKTTFMQEWDGLRTTSDRVIVVASTNRPY
ALDQAVLRRMPRRILVDLPDQATREDMLHKILSSNRVAPAVNLTSIARRL
DGYTGSDIREVCREAVVRIAHEESKKLDEAQGVEVGSLGQRLRPVEKADF
DAALEKLSASVAARGRELERVREWNNQFGEVRKKVRPPHMSMYV* back to topmRNA from alignment at scaffold_6:218560..220647- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3400 ID=mRNA_3400|Name=jgi.p|Nanoce1779_2|552743|organism=Nannochloropsis oceanica|type=mRNA|length=2088bp|location=Sequence derived from alignment at scaffold_6:218560..220647- (Nannochloropsis oceanica)
GGGGAGGAAAGGCGGGAGGGGGGGGTAGTTCCGCGGGGGGGCTACCCAAG
ATAGTGACAGAGGAGGATGGGGCTTTCCACCTCCTGTCGCTCGAAGGGTT
GGAAACGGCCTTGGGGATGGTGTGCAAGACCAGCGTGCCGCGCCCGGGGA
ACCCGATCTCGAGGACGAAGGAGGAGGTGACGGCCTTGGCGCAGAACAGG
CACGAGCACGCCCTGGTCCCTAACGTGATCTCCCCGACTGATATTGGTGT
GACGTACCAAGAAATCGGTGGCTTGGCCGATGTGAAGGAGACGCTGAGGC
AGTGTGTGACGTACCCCCTGCGGTTTCCTCATTTGTACAGTGAGGGGATC
GCGGCCGACTCGGTCAAGGGCGTGTTGTTGTTTGGGTGAGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGATGTATGGACGTATGTCCCGTCATTCAAAGCA
ACAAGTCATCTGAAAACTCAACCAATCAAAACCAACCCTCCCTCCCTTCA
TCCATCCATCCATGCCTCCTTTCTTCCTTCCATTCCTCGCTTCTTCTCTC
GCAGACCTCCGGGGACGGGCAAAACGATGCTGGCCAAGGCGGTCGCGACC
GAGGGAGGGGCGACCTTCCTCTCGGTGGACGCCTCGGTAATTGAGAGCAA
ATGGTTGGGGGAGAGCGAGAAGAACGCTAAGGCCGTTTTTACCCTGGCGC
GACGCCTGGCCCCGTGCGTGATTTATCTGGACGAGGTGGACTCCATTTTG
AGCAGTCGGGACCAGGGGGAAGACACCAAGTACAACACCATTACGAGCGT
CAAGACGACCTTCATGCAGGAGTGGGACGGGCTGCGGACGACGAGCGACC
GGGTGATTGTCGTGGCGAGCACCAACAGGCCTTATGCATTGGACCAGGCG
GTGTTGCGGAGAATGCCAAGGCGGATTTTAGTGGACCTACCCGACCAAGC
GACGAGGGAGGATATGTTGCACAAGGTGAGGGAGAAAGAGGACGGGCAAA
GACAGGGGGGGGGGGGGGGGGGGGGGGGGGGTCAACAAGATTTATCTAGA
AAGTGGAAATCTACGTCAGCAGCAGGAACAAAAGAGATTCTCCTCACTCT
TTCTTTCTCTCCCTGTCCCTCCTTTCCTTTCTCCTTCCGTCCTTCCCTCC
CCTCGTCAGATTCTCTCTTCCAACCGTGTCGCACCCGCCGTGAATCTTAC
GAGCATCGCGAGGCGTCTAGACGGCTACACGGGAAGTGACATCAGGGAGG
TTTGCCGCGAGGCAGTCGTGCGAATCGCGCACGAAGAGAGCAAGAAACTG
GATGAGGCACAGGGGGTAGAGGTAGGGTCATTGGGACAACGGTTAAGGCC
CGTGGAAAAAGCTGATTTTGACGCGGCGTTGGAGAAATTGAGTGCGTCCG
TGGCGGCGAGGGGAAGGGAGCTGGAGCGGGTAAGGGAGTGGAACAACCAG
TTTGGGGAGGTGAGGAAGAAGGTGAGGCCACCGCATATGTCCATGTATGT
GTAGTGCGGTCCAAAGTGGTGTAGCAGGACTACCCTCCCTTCCTCCCCTC
TGCGCTCACTTTATCCCTCCCCTTTTGCTCAAGCCGGGGGGATCAAGAGG
ACGAGGGAGGGGAAAAGGGGGCATGGGAGGAGCGAGAAAGAGGAAAAATA
TAGGTCTACTTCGAAGGCAGAGAAAATTAGGGATAGCTGTATTACGTAAG
GGAAGGTTGGGGTGGAGGGAGGAAGCGAGGGTGGAAGGGGGGAAAGATGG
AGTGTGAAGTACTTTCTATAAATGCACGAAAGGTAGGTTCAGGTATTAGG
AGACTCAAAAGAGGTGGAACTCGAGAGATAGCACAGATTGTTGGTATGTA
AATACAACACCGTTGGGGAGGGACTGATGGAGTGGGGGAAGGACACTCGG
GTGGAGACAGTAATGGAAGAGCAAATATGCATCAACATAACCACTATCTC
AGGGAAGCAGGGAGGGTAGACCGTGCCGAGTGCGTGTAGGGTAGCAAGCA
GCGGTGGAGAAGGAGTATGAAATCAATGCAACGCGTGCGTGGGCAATACC
ACAACAATAAAGAAAACAAGACGATGCCACAATGTGCA back to topCoding sequence (CDS) from alignment at scaffold_6:218560..220647- >mRNA_3400 ID=mRNA_3400|Name=jgi.p|Nanoce1779_2|552743|organism=Nannochloropsis oceanica|type=CDS|length=3105bp|location=Sequence derived from alignment at scaffold_6:218560..220647- (Nannochloropsis oceanica)
ATTCTCTCTTCCAACCGTGTCGCACCCGCCGTGAATCTTACGAGCATCGC
GAGGCGTCTAGACGGCTACACGGGAAGTGACATCAGGGAGGTTTGCCGCG
AGGCAGTCGTGCGAATCGCGCACGAAGAGAGCAAGAAACTGGATGAGGCA
CAGGGGGTAGAGGTAGGGTCATTGGGACAACGGTTAAGGCCCGTGGAAAA
AGCTGATTTTGACGCGGCGTTGGAGAAATTGAGTGCGTCCGTGGCGGCGA
GGGGAAGGGAGCTGGAGCGGGTAAGGGAGTGGAACAACCAGTTTGGGGAG
GTGAGGAAGAAGGTGAGGCCACCGCATATGTCCATGTATGTGTAGACCTC
CGGGGACGGGCAAAACGATGCTGGCCAAGGCGGTCGCGACCGAGGGAGGG
GCGACCTTCCTCTCGGTGGACGCCTCGGTAATTGAGAGCAAATGGTTGGG
GGAGAGCGAGAAGAACGCTAAGGCCGTTTTTACCCTGGCGCGACGCCTGG
CCCCGTGCGTGATTTATCTGGACGAGGTGGACTCCATTTTGAGCAGTCGG
GACCAGGGGGAAGACACCAAGTACAACACCATTACGAGCGTCAAGACGAC
CTTCATGCAGGAGTGGGACGGGCTGCGGACGACGAGCGACCGGGTGATTG
TCGTGGCGAGCACCAACAGGCCTTATGCATTGGACCAGGCGGTGTTGCGG
AGAATGCCAAGGCGGATTTTAGTGGACCTACCCGACCAAGCGACGAGGGA
GGATATGTTGCACAAGATGGTGTGCAAGACCAGCGTGCCGCGCCCGGGGA
ACCCGATCTCGAGGACGAAGGAGGAGGTGACGGCCTTGGCGCAGAACAGG
CACGAGCACGCCCTGGTCCCTAACGTGATCTCCCCGACTGATATTGGTGT
GACGTACCAAGAAATCGGTGGCTTGGCCGATGTGAAGGAGACGCTGAGGC
AGTGTGTGACGTACCCCCTGCGGTTTCCTCATTTGTACAGTGAGGGGATC
GCGGCCGACTCGGTCAAGGGCGTGTTGTTGTTTGGATTCTCTCTTCCAAC
CGTGTCGCACCCGCCGTGAATCTTACGAGCATCGCGAGGCGTCTAGACGG
CTACACGGGAAGTGACATCAGGGAGGTTTGCCGCGAGGCAGTCGTGCGAA
TCGCGCACGAAGAGAGCAAGAAACTGGATGAGGCACAGGGGGTAGAGGTA
GGGTCATTGGGACAACGGTTAAGGCCCGTGGAAAAAGCTGATTTTGACGC
GGCGTTGGAGAAATTGAGTGCGTCCGTGGCGGCGAGGGGAAGGGAGCTGG
AGCGGGTAAGGGAGTGGAACAACCAGTTTGGGGAGGTGAGGAAGAAGGTG
AGGCCACCGCATATGTCCATGTATGTGTAGACCTCCGGGGACGGGCAAAA
CGATGCTGGCCAAGGCGGTCGCGACCGAGGGAGGGGCGACCTTCCTCTCG
GTGGACGCCTCGGTAATTGAGAGCAAATGGTTGGGGGAGAGCGAGAAGAA
CGCTAAGGCCGTTTTTACCCTGGCGCGACGCCTGGCCCCGTGCGTGATTT
ATCTGGACGAGGTGGACTCCATTTTGAGCAGTCGGGACCAGGGGGAAGAC
ACCAAGTACAACACCATTACGAGCGTCAAGACGACCTTCATGCAGGAGTG
GGACGGGCTGCGGACGACGAGCGACCGGGTGATTGTCGTGGCGAGCACCA
ACAGGCCTTATGCATTGGACCAGGCGGTGTTGCGGAGAATGCCAAGGCGG
ATTTTAGTGGACCTACCCGACCAAGCGACGAGGGAGGATATGTTGCACAA
GATGGTGTGCAAGACCAGCGTGCCGCGCCCGGGGAACCCGATCTCGAGGA
CGAAGGAGGAGGTGACGGCCTTGGCGCAGAACAGGCACGAGCACGCCCTG
GTCCCTAACGTGATCTCCCCGACTGATATTGGTGTGACGTACCAAGAAAT
CGGTGGCTTGGCCGATGTGAAGGAGACGCTGAGGCAGTGTGTGACGTACC
CCCTGCGGTTTCCTCATTTGTACAGTGAGGGGATCGCGGCCGACTCGGTC
AAGGGCGTGTTGTTGTTTGGATTCTCTCTTCCAACCGTGTCGCACCCGCC
GTGAATCTTACGAGCATCGCGAGGCGTCTAGACGGCTACACGGGAAGTGA
CATCAGGGAGGTTTGCCGCGAGGCAGTCGTGCGAATCGCGCACGAAGAGA
GCAAGAAACTGGATGAGGCACAGGGGGTAGAGGTAGGGTCATTGGGACAA
CGGTTAAGGCCCGTGGAAAAAGCTGATTTTGACGCGGCGTTGGAGAAATT
GAGTGCGTCCGTGGCGGCGAGGGGAAGGGAGCTGGAGCGGGTAAGGGAGT
GGAACAACCAGTTTGGGGAGGTGAGGAAGAAGGTGAGGCCACCGCATATG
TCCATGTATGTGTAGACCTCCGGGGACGGGCAAAACGATGCTGGCCAAGG
CGGTCGCGACCGAGGGAGGGGCGACCTTCCTCTCGGTGGACGCCTCGGTA
ATTGAGAGCAAATGGTTGGGGGAGAGCGAGAAGAACGCTAAGGCCGTTTT
TACCCTGGCGCGACGCCTGGCCCCGTGCGTGATTTATCTGGACGAGGTGG
ACTCCATTTTGAGCAGTCGGGACCAGGGGGAAGACACCAAGTACAACACC
ATTACGAGCGTCAAGACGACCTTCATGCAGGAGTGGGACGGGCTGCGGAC
GACGAGCGACCGGGTGATTGTCGTGGCGAGCACCAACAGGCCTTATGCAT
TGGACCAGGCGGTGTTGCGGAGAATGCCAAGGCGGATTTTAGTGGACCTA
CCCGACCAAGCGACGAGGGAGGATATGTTGCACAAGATGGTGTGCAAGAC
CAGCGTGCCGCGCCCGGGGAACCCGATCTCGAGGACGAAGGAGGAGGTGA
CGGCCTTGGCGCAGAACAGGCACGAGCACGCCCTGGTCCCTAACGTGATC
TCCCCGACTGATATTGGTGTGACGTACCAAGAAATCGGTGGCTTGGCCGA
TGTGAAGGAGACGCTGAGGCAGTGTGTGACGTACCCCCTGCGGTTTCCTC
ATTTGTACAGTGAGGGGATCGCGGCCGACTCGGTCAAGGGCGTGTTGTTG
TTTGG back to top
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