jgi.p|Nanoce1779_2|552695, gene_3353 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|552695
Unique Namegene_3353
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_6:99697..101618 +

Link to JBrowse

Properties
Property NameValue
TranscriptId552781
ProteinId552695
Product namevacuolar amino acid transporter 6
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:99697..101618 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL083ncniL083Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00300NO08G00300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552695mRNA_3353-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552695mRNA_3353Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|552695

>mRNA_3353-protein ID=mRNA_3353-protein|Name=jgi.p|Nanoce1779_2|552695|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MPSFTIPSSQWPDDHSQTPHERDQLLSSSDPYSLSASSSLISSYGGTAPK
TVDAPPSGTLGSSILILISSVFGSSILAVPFAFSKCGWFLGTICLIFCGL
LTQLGAHFLLESAYLVSSSLAPSSSPRCLAFSDIAARATPRLAFLPNVLV
VVNCLGSAVASLVVAGDLMPRTFRDLAILSDHSSLIENANGLLDDYLLHR
SLWVSLILLLVLPLCFLRSITPLRYAGLVTCIAVSYFIIVVVTLFIFPSA
GACLLYSSPPSSSISCAKNVIPFPPSLPVLLHHLLLACPVFFFSFSINFQ
VLPIHNALRNPSLHTTHLAIATALICSGLTYLLVSLSAYSTFGELVQSNL
FKNYGNTWPLDTARLLMLLVVALLYPLVIFSARASLLTLLRPSSSSSSPP
SRRLFILLTCLLLLLSFGLALAFQDLSVILGTVGALATVPISLTLPSLYY
LSLALPPSLPSQQAKEGDGEGGRGGEGWRIVARLGVGMGLLMSIVFLYGT
YV*
back to top
Synonyms
Publications