jgi.p|Nanoce1779_2|552695, mRNA_3353 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|552695
Unique Name	mRNA_3353
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1691
Alignment location	scaffold_6:99697..101618 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	552781
Track	FilteredModels2
ProteinId	552695

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:99697..101618 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|552695	gene_3353	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|552695	mRNA_3353-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3353	CDS_3353	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:99697..101618+
coding sequence from alignment at scaffold_6:99697..101618+

mRNA sequence

>mRNA_3353 ID=mRNA_3353|Name=jgi.p|Nanoce1779_2|552695|organism=Nannochloropsis oceanica|type=mRNA|length=1691bp
ATGCCATCATTTACGATCCCGTCCTCACAGTGGCCGGATGACCACAGCCA
AACTCCCCATGAGCGAGACCAACTACTATCCTCCTCGGATCCATATTCCT
TGTCCGCATCATCCTCTTTAATTTCCTCCTACGGTGGTACAGCACCCAAA
ACAGTGGACGCTCCTCCGAGTGGCACCCTTGGAAGCAGCATTCTGATCCT
CATCTCCTCTGTCTTTGGATCCTCCATTCTGGCAGTCCCTTTTGCATTCA
GCAAGTGCGGCTGGTTTTTGGGCACCATCTGCCTCATCTTCTGTGGCCTT
CTCACGCAACTCGGCGCCCACTTCCTCCTTGAAAGCGCGTACCTTGTCTC
TTCCTCTCTTGCTCCTTCATCCTCCCCACGATGCCTAGCGTTCTCCGACA
TTGCTGCCCGCGCCACTCCCCGCCTTGCCTTTCTTCCCAACGTCCTCGTC
GTTGTCAACTGCCTCGGGAGCGCCGTTGCCTCCCTAGTCGTCGCCGGAGA
CCTCATGCCCCGGACTTTTCGGGATCTGGCCATCCTCTCCGATCATTCCT
CCCTGATTGAGAACGCCAATGGCCTCCTGGATGACTACCTCCTCCACCGC
TCTCTCTGGGTCTCCCTCATCCTCCTCCTCGTCCTCCCCCTGTGCTTCCT
CCGTTCCATTACTCCCCTGCGCTACGCTGGTCTGGTGACTTGCATCGCCG
TCTCCTACTTTATTATTGTTGTGGTCACCCTCTTCATCTTTCCATCCGCC
GGGGCCTGCCTCCTGTATTCCTCCCCTCCTTCCTCCTCCATTTCATGCGC
CAAAAACGTCATCCCCTTCCCCCCCTCCCTCCCTGTCCTCCTCCACCACC
TCCTCCTCGCCTGTCCTGTCTTCTTCTTCTCCTTTTCCATCAATTTTCAA
GTCCTCCCCATTCATAATGCCCTGCGCAATCCCTCCCTCCACACTACCCA
CCTCGCCATTGCCACCGCCCTTATCTGCAGTGGACTCACGTACCTCCTCG
TCTCCCTCTCTGCTTACTCCACCTTCGGCGAACTAGTGCAATCGAATTTA
TTCAAGAACTACGGGAACACCTGGCCACTGGATACAGCGCGGTTGCTAAT
GCTCCTGGTGGTGGCCTTGCTCTATCCCCTCGTTATTTTCTCTGCCCGTG
CTTCCCTCCTCACCCTCCTCCGCCCCTCCTCCTCCTCCTCCTCCCCCCCG
TCCCGGCGGCTCTTCATCCTCCTCACATGCCTCCTCCTCCTCCTCTCCTT
CGGTCTCGCCCTCGCCTTCCAGGACCTCAGCGTCATTCTCGGCACCGTCG
GAGCGCTGGCCACGGTTCCCATCTCTCTTACTCTCCCCTCACTCTACTAC
CTCTCCCTCGCCCTCCCTCCCTCCCTCCCATCCCAGCAAGCCAAGGAGGG
AGACGGGGAAGGAGGGAGGGGAGGCGAAGGGTGGAGGATAGTGGCAAGAC
TTGGAGTGGGAATGGGGTTGCTCATGTCCATTGTCTTTTTATACGGGACG
TACGTGTAGGGAGGGAGAAAAAAAAGAGAAATGATCTATATAGATAGGTA
AGCTGTCGCGTAAGGAAAAACCTGAATAAGAAGCCCCTCAAGATGCGGGA
TGTGCATGGGATTGATATTGATTGATTCATACTGTTTGACAAGGCACGTA
CGAGGACGTGGGAGGGATCGAAATAAACACACCCGAATACA

protein sequence of jgi.p|Nanoce1779_2|552695

>mRNA_3353-protein ID=mRNA_3353-protein|Name=jgi.p|Nanoce1779_2|552695|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MPSFTIPSSQWPDDHSQTPHERDQLLSSSDPYSLSASSSLISSYGGTAPK
TVDAPPSGTLGSSILILISSVFGSSILAVPFAFSKCGWFLGTICLIFCGL
LTQLGAHFLLESAYLVSSSLAPSSSPRCLAFSDIAARATPRLAFLPNVLV
VVNCLGSAVASLVVAGDLMPRTFRDLAILSDHSSLIENANGLLDDYLLHR
SLWVSLILLLVLPLCFLRSITPLRYAGLVTCIAVSYFIIVVVTLFIFPSA
GACLLYSSPPSSSISCAKNVIPFPPSLPVLLHHLLLACPVFFFSFSINFQ
VLPIHNALRNPSLHTTHLAIATALICSGLTYLLVSLSAYSTFGELVQSNL
FKNYGNTWPLDTARLLMLLVVALLYPLVIFSARASLLTLLRPSSSSSSPP
SRRLFILLTCLLLLLSFGLALAFQDLSVILGTVGALATVPISLTLPSLYY
LSLALPPSLPSQQAKEGDGEGGRGGEGWRIVARLGVGMGLLMSIVFLYGT
YV*

mRNA from alignment at scaffold_6:99697..101618+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3353 ID=mRNA_3353|Name=jgi.p|Nanoce1779_2|552695|organism=Nannochloropsis oceanica|type=mRNA|length=1922bp|location=Sequence derived from alignment at scaffold_6:99697..101618+ (Nannochloropsis oceanica)
ATGCCATCATTTACGATCCCGTCCTCACAGTGGCCGGATGACCACAGCCA
AACTCCCCATGAGCGAGACCAACTACTATCCTCCTCGGATCCATATTCCT
TGTCCGCATCATCCTCTTTAATTTCCTCCTACGGTGGTACAGCACCCAAA
ACAGTGGACGCTCCTCCGAGTGGCACCCTTGGAAGCAGCATTCTGATCCT
CATCTCCTCTGTCTTTGGATCCTCCATTCTGGCAGTCCCTTTTGCATTCA
GCAAGTGCGGCTGGTTTTTGGGCACCATCTGCCTCATCTTCTGTGGCCTT
CTCACGCAACTCGGCGCCCACTTCCTCCTTGAAAGCGCGTACCTTGTCTC
TTCCTCTCTTGCTCCTTCATCCTCCCCACGATGCCTAGCGTTCTCCGACA
TTGCTGCCCGCGCCACTCCCCGCCTTGCCTTTCTTCCCAACGTCCTCGTC
GTTGTCAACTGCCTCGGGAGCGCCGTTGCCTCCCTAGTCGTCGCCGGAGA
CCTCATGCCCCGGACTTTTCGGGATCTGGCCATCCTCTCCGATCATTCCT
CCCTGATTGAGAACGCCAATGGCCTCCTGGATGACTACCTCCTCCACCGC
TCTCTCTGGGTCTCCCTCATCCTCCTCCTCGTCCTCCCCCTGTGCTTCCT
CCGTTCCATTACTCCCCTGCGCTACGCTGGTCTGGTGACTTGCATCGCCG
TCTCCTACTTTATTATTGTTGTGGTCACCCTCTTCATCTTTCCATCCGCC
GGGGCCTGCCTCCTGTATTCCTCCCCTCCTTCCTCCTCCATTTCATGCGC
CAAAAACGTCATCCCCTTCCCCCCCTCCCTCCCTGTCCTCCTCCACCACC
TCCTCCTCGCCTGTCCTGTCTTCTTCTTCTCCTTTTCCATCAATTTTCAA
GTCCTCCCCATTCATAATGCCCTGCGCAATCCCTCCCTCCACACTACCCA
CCTCGCCATTGCCACCGCCCTTATCTGCAGTGGACTCACGTACCTCCTCG
TCTCCCTCTCTGCTTACTCCACCTTCGGCGAACTAGTGCAATCGAATTTA
TTCAAGAACTACGGGAACACCTGGCCACTGGATACAGCGCGGTTGCTAAT
GCTCCTGGTGGTGGCCTTGCTCTATCCCCTCGTTAGTAGGTCCTTCGCCG
TGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCTTCCC
TCCCTCCCTTCTCCTTCTTTTTGGTCCCTCCCTCAGACCGTGAACGCCTG
GTTCCCTGCAATCTTACTTTCACGCTTTCTCCTATTTTATTCCTTCTCCC
ACTCTCAATCCTAATCCAGTTTTCTCTGCCCGTGCTTCCCTCCTCACCCT
CCTCCGCCCCTCCTCCTCCTCCTCCTCCCCCCCGTCCCGGCGGCTCTTCA
TCCTCCTCACATGCCTCCTCCTCCTCCTCTCCTTCGGTCTCGCCCTCGCC
TTCCAGGACCTCAGCGTCATTCTCGGCACCGTCGGAGCGCTGGCCACGGT
TCCCATCTCTCTTACTCTCCCCTCACTCTACTACCTCTCCCTCGCCCTCC
CTCCCTCCCTCCCATCCCAGCAAGCCAAGGAGGGAGACGGGGAAGGAGGG
AGGGGAGGCGAAGGGTGGAGGATAGTGGCAAGACTTGGAGTGGGAATGGG
GTTGCTCATGTCCATTGTCTTTTTATACGGGACGTACGTGTAGGGAGGAC
GAGGGGGCGACGAGGGGAGGGAGGGAGGGAGGGGAGGGAGGGAGGGAGAA
AAAAAAGAGAAATGATCTATATAGATAGGTAAGCTGTCGCGTAAGGAAAA
ACCTGAATAAGAAGCCCCTCAAGATGCGGGATGTGCATGGGATTGATATT
GATTGATTCATACTGTTTGACAAGGCACGTACGAGGACGTGGGAGGGATC
GAAATAAACACACCCGAATACA

Coding sequence (CDS) from alignment at scaffold_6:99697..101618+

>mRNA_3353 ID=mRNA_3353|Name=jgi.p|Nanoce1779_2|552695|organism=Nannochloropsis oceanica|type=CDS|length=3018bp|location=Sequence derived from alignment at scaffold_6:99697..101618+ (Nannochloropsis oceanica)
ATGCCATCATTTACGATCCCGTCCTCACAGTGGCCGGATGACCACAGCCA
AACTCCCCATGAGCGAGACCAACTACTATCCTCCTCGGATCCATATTCCT
TGTCCGCATCATCCTCTTTAATTTCCTCCTACGGTGGTACAGCACCCAAA
ACAGTGGACGCTCCTCCGAGTGGCACCCTTGGAAGCAGCATTCTGATCCT
CATCTCCTCTGTCTTTGGATCCTCCATTCTGGCAGTCCCTTTTGCATTCA
GCAAGTGCGGCTGGTTTTTGGGCACCATCTGCCTCATCTTCTGTGGCCTT
CTCACGCAACTCGGCGCCCACTTCCTCCTTGAAAGCGCGTACCTTGTCTC
TTCCTCTCTTGCTCCTTCATCCTCCCCACGATGCCTAGCGTTCTCCGACA
TTGCTGCCCGCGCCACTCCCCGCCTTGCCTTTCTTCCCAACGTCCTCGTC
GTTGTCAACTGCCTCGGGAGCGCCGTTGCCTCCCTAGTCGTCGCCGGAGA
CCTCATGCCCCGGACTTTTCGGGATCTGGCCATCCTCTCCGATCATTCCT
CCCTGATTGAGAACGCCAATGGCCTCCTGGATGACTACCTCCTCCACCGC
TCTCTCTGGGTCTCCCTCATCCTCCTCCTCGTCCTCCCCCTGTGCTTCCT
CCGTTCCATTACTCCCCTGCGCTACGCTGGTCTGGTGACTTGCATCGCCG
TCTCCTACTTTATTATTGTTGTGGTCACCCTCTTCATCTTTCCATCCGCC
GGGGCCTGCCTCCTGTATTCCTCCCCTCCTTCCTCCTCCATTTCATGCGC
CAAAAACGTCATCCCCTTCCCCCCCTCCCTCCCTGTCCTCCTCCACCACC
TCCTCCTCGCCTGTCCTGTCTTCTTCTTCTCCTTTTCCATCAATTTTCAA
GTCCTCCCCATTCATAATGCCCTGCGCAATCCCTCCCTCCACACTACCCA
CCTCGCCATTGCCACCGCCCTTATCTGCAGTGGACTCACGTACCTCCTCG
TCTCCCTCTCTGCTTACTCCACCTTCGGCGAACTAGTGCAATCGAATTTA
TTCAAGAACTACGGGAACACCTGGCCACTGGATACAGCGCGGTTGCTAAT
GCTCCTGGTGGTGGCCTTGCTCTATCCCCTCGTTATTTTCTCTGCCCGTG
CTTCCCTCCTCACCCTCCTCCGCCCCTCCTCCTCCTCCTCCTCCCCCCCG
TCCCGGCGGCTCTTCATCCTCCTCACATGCCTCCTCCTCCTCCTCTCCTT
CGGTCTCGCCCTCGCCTTCCAGGACCTCAGCGTCATTCTCGGCACCGTCG
GAGCGCTGGCCACGGTTCCCATCTCTCTTACTCTCCCCTCACTCTACTAC
CTCTCCCTCGCCCTCCCTCCCTCCCTCCCATCCCAGCAAGCCAAGGAGGG
AGACGGGGAAGGAGGGAGGGGAGGCGAAGGGTGGAGGATAGTGGCAAGAC
TTGGAGTGGGAATGGGGTTGCTCATGTCCATTGTCTTTTTATACGGGACG
TACGTGTAGATGCCATCATTTACGATCCCGTCCTCACAGTGGCCGGATGA
CCACAGCCAAACTCCCCATGAGCGAGACCAACTACTATCCTCCTCGGATC
CATATTCCTTGTCCGCATCATCCTCTTTAATTTCCTCCTACGGTGGTACA
GCACCCAAAACAGTGGACGCTCCTCCGAGTGGCACCCTTGGAAGCAGCAT
TCTGATCCTCATCTCCTCTGTCTTTGGATCCTCCATTCTGGCAGTCCCTT
TTGCATTCAGCAAGTGCGGCTGGTTTTTGGGCACCATCTGCCTCATCTTC
TGTGGCCTTCTCACGCAACTCGGCGCCCACTTCCTCCTTGAAAGCGCGTA
CCTTGTCTCTTCCTCTCTTGCTCCTTCATCCTCCCCACGATGCCTAGCGT
TCTCCGACATTGCTGCCCGCGCCACTCCCCGCCTTGCCTTTCTTCCCAAC
GTCCTCGTCGTTGTCAACTGCCTCGGGAGCGCCGTTGCCTCCCTAGTCGT
CGCCGGAGACCTCATGCCCCGGACTTTTCGGGATCTGGCCATCCTCTCCG
ATCATTCCTCCCTGATTGAGAACGCCAATGGCCTCCTGGATGACTACCTC
CTCCACCGCTCTCTCTGGGTCTCCCTCATCCTCCTCCTCGTCCTCCCCCT
GTGCTTCCTCCGTTCCATTACTCCCCTGCGCTACGCTGGTCTGGTGACTT
GCATCGCCGTCTCCTACTTTATTATTGTTGTGGTCACCCTCTTCATCTTT
CCATCCGCCGGGGCCTGCCTCCTGTATTCCTCCCCTCCTTCCTCCTCCAT
TTCATGCGCCAAAAACGTCATCCCCTTCCCCCCCTCCCTCCCTGTCCTCC
TCCACCACCTCCTCCTCGCCTGTCCTGTCTTCTTCTTCTCCTTTTCCATC
AATTTTCAAGTCCTCCCCATTCATAATGCCCTGCGCAATCCCTCCCTCCA
CACTACCCACCTCGCCATTGCCACCGCCCTTATCTGCAGTGGACTCACGT
ACCTCCTCGTCTCCCTCTCTGCTTACTCCACCTTCGGCGAACTAGTGCAA
TCGAATTTATTCAAGAACTACGGGAACACCTGGCCACTGGATACAGCGCG
GTTGCTAATGCTCCTGGTGGTGGCCTTGCTCTATCCCCTCGTTATTTTCT
CTGCCCGTGCTTCCCTCCTCACCCTCCTCCGCCCCTCCTCCTCCTCCTCC
TCCCCCCCGTCCCGGCGGCTCTTCATCCTCCTCACATGCCTCCTCCTCCT
CCTCTCCTTCGGTCTCGCCCTCGCCTTCCAGGACCTCAGCGTCATTCTCG
GCACCGTCGGAGCGCTGGCCACGGTTCCCATCTCTCTTACTCTCCCCTCA
CTCTACTACCTCTCCCTCGCCCTCCCTCCCTCCCTCCCATCCCAGCAAGC
CAAGGAGGGAGACGGGGAAGGAGGGAGGGGAGGCGAAGGGTGGAGGATAG
TGGCAAGACTTGGAGTGGGAATGGGGTTGCTCATGTCCATTGTCTTTTTA
TACGGGACGTACGTGTAG

Synonyms

Publications