jgi.p|Nanoce1779_2|585250, gene_3300 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585250
Unique Namegene_3300
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_7:1143480..1144720 -

Link to JBrowse

Properties
Property NameValue
TranscriptId585336
ProteinId585250
Product nameClpP/crotonase-like domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1143480..1144720 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004490methylglutaconyl-CoA hydratase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL092ncniL092Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04830NO05G04830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585250mRNA_3300-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585250mRNA_3300Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|585250

>mRNA_3300-protein ID=mRNA_3300-protein|Name=jgi.p|Nanoce1779_2|585250|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MFRAITIACYPSSQLLPSAFLSPRFRTSSSKSTSSPPPPPQSSPLLITRH
TLDGFPAIEHKDGVIVELALNRPEARNALNKSLVSELHEAIASLGQDSTA
RVVVIKSTSPTSAFCAGADLKERTSMSVTEVSSFVSSLRALMDGVENLPI
PTVAVIEGATFGGGLELALACDLRVAGPKAQMGLTETSLAIIPGAGGTQR
LPRVVGEAKAKELIFRAVRIGAREAWRVGLVNVLMEGDGRGGGEEVGRIC
REMASNGPVAVRAAKKAVREGMQVDLRTGLELERECYATVIPTEDRIEGL
RAFKEKRKPVYNGR*
back to top
Synonyms
Publications