jgi.p|Nanoce1779_2|585250, mRNA_3300 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585250
Unique NamemRNA_3300
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1241
Alignment locationscaffold_7:1143480..1144720 -

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Properties
Property NameValue
TranscriptId585336
TrackFilteredModels2
ProteinId585250
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1143480..1144720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585250gene_3300Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585250mRNA_3300-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3300CDS_3300Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3300 ID=mRNA_3300|Name=jgi.p|Nanoce1779_2|585250|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp
GTTTTTTGTTCTGTGCATGAAGCAATTTATGTATCCCACTCACAACACAA
TCACATCCACAGCCTTCTCGAGTCGAGCATGTTCCGCGCCATCACGATCG
CCTGTTATCCCAGCTCTCAGCTTCTTCCGTCCGCATTCCTGTCTCCTCGC
TTTCGCACCAGCTCCTCCAAGTCGACCTCCTCCCCCCCTCCTCCTCCTCA
ATCCTCTCCCCTCCTTATCACCCGTCACACCCTCGACGGATTCCCTGCCA
TCGAGCACAAGGACGGCGTTATTGTTGAGCTGGCTCTGAACCGGCCCGAG
GCTCGGAATGCGCTGAACAAGTCGCTGGTCTCGGAGCTTCATGAAGCCAT
CGCCTCCCTTGGGCAGGATAGCACTGCTCGTGTTGTCGTCATAAAAAGCA
CCTCGCCCACCTCCGCGTTTTGCGCGGGGGCCGATTTAAAAGAACGGACC
AGTATGTCGGTTACTGAGGTGTCATCATTTGTCTCGAGCTTGCGGGCGTT
GATGGATGGGGTGGAGAATCTACCAATACCGACTGTGGCTGTGATTGAGG
GGGCTACGTTTGGCGGGGGATTAGAACTGGCCCTGGCGTGCGATTTGCGT
GTGGCGGGACCAAAGGCACAGATGGGACTGACGGAGACGAGCTTGGCGAT
CATTCCCGGAGCGGGGGGGACGCAGAGGCTACCACGGGTGGTAGGGGAGG
CGAAGGCCAAGGAGCTCATATTCAGGGCAGTTAGGATAGGGGCACGAGAG
GCATGGAGGGTAGGGTTAGTAAATGTGCTGATGGAGGGGGACGGAAGGGG
GGGGGGAGAGGAGGTGGGGAGGATTTGTAGGGAGATGGCATCGAATGGGC
CGGTGGCTGTGAGGGCGGCTAAGAAGGCAGTTAGGGAGGGAATGCAGGTT
GACTTGAGGACGGGGTTGGAGCTGGAGAGGGAGTGCTATGCAACGGTGAT
TCCAACGGAGGATAGGATAGAGGGATTGAGAGCGTTCAAAGAGAAGAGGA
AGCCGGTGTATAATGGGAGGTGAAGGAGGGAGTCAGGAAGGGAGGGACTC
TCTTTGTGAGAAGGTGGATGTAAAGACGAGTGGCAACAAGAGATATCGAA
TGAGTTTAATTTATGGGGTATGTGCATGAGGCATCAACACCAACTACAGA
AAGGAGAGAAAAAGAGAAACAGACACACATAGAATTGGAGAGTAGTCAAG
TTTGAAACACCTTGAGGAACGAACGACTGAAGATGTTCATG
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protein sequence of jgi.p|Nanoce1779_2|585250

>mRNA_3300-protein ID=mRNA_3300-protein|Name=jgi.p|Nanoce1779_2|585250|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MFRAITIACYPSSQLLPSAFLSPRFRTSSSKSTSSPPPPPQSSPLLITRH
TLDGFPAIEHKDGVIVELALNRPEARNALNKSLVSELHEAIASLGQDSTA
RVVVIKSTSPTSAFCAGADLKERTSMSVTEVSSFVSSLRALMDGVENLPI
PTVAVIEGATFGGGLELALACDLRVAGPKAQMGLTETSLAIIPGAGGTQR
LPRVVGEAKAKELIFRAVRIGAREAWRVGLVNVLMEGDGRGGGEEVGRIC
REMASNGPVAVRAAKKAVREGMQVDLRTGLELERECYATVIPTEDRIEGL
RAFKEKRKPVYNGR*
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mRNA from alignment at scaffold_7:1143480..1144720-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3300 ID=mRNA_3300|Name=jgi.p|Nanoce1779_2|585250|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp|location=Sequence derived from alignment at scaffold_7:1143480..1144720- (Nannochloropsis oceanica)
GTTTTTTGTTCTGTGCATGAAGCAATTTATGTATCCCACTCACAACACAA
TCACATCCACAGCCTTCTCGAGTCGAGCATGTTCCGCGCCATCACGATCG
CCTGTTATCCCAGCTCTCAGCTTCTTCCGTCCGCATTCCTGTCTCCTCGC
TTTCGCACCAGCTCCTCCAAGTCGACCTCCTCCCCCCCTCCTCCTCCTCA
ATCCTCTCCCCTCCTTATCACCCGTCACACCCTCGACGGATTCCCTGCCA
TCGAGCACAAGGACGGCGTTATTGTTGAGCTGGCTCTGAACCGGCCCGAG
GCTCGGAATGCGCTGAACAAGTCGCTGGTCTCGGAGCTTCATGAAGCCAT
CGCCTCCCTTGGGCAGGATAGCACTGCTCGTGTTGTCGTCATAAAAAGCA
CCTCGCCCACCTCCGCGTTTTGCGCGGGGGCCGATTTAAAAGAACGGACC
AGTATGTCGGTTACTGAGGTGTCATCATTTGTCTCGAGCTTGCGGGCGTT
GATGGATGGGGTGGAGAATCTACCAATACCGACTGTGGCTGTGATTGAGG
GGGCTACGTTTGGCGGGGGATTAGAACTGGCCCTGGCGTGCGATTTGCGT
GTGGCGGGACCAAAGGCACAGATGGGACTGACGGAGACGAGCTTGGCGAT
CATTCCCGGAGCGGGGGGGACGCAGAGGCTACCACGGGTGGTAGGGGAGG
CGAAGGCCAAGGAGCTCATATTCAGGGCAGTTAGGATAGGGGCACGAGAG
GCATGGAGGGTAGGGTTAGTAAATGTGCTGATGGAGGGGGACGGAAGGGG
GGGGGGAGAGGAGGTGGGGAGGATTTGTAGGGAGATGGCATCGAATGGGC
CGGTGGCTGTGAGGGCGGCTAAGAAGGCAGTTAGGGAGGGAATGCAGGTT
GACTTGAGGACGGGGTTGGAGCTGGAGAGGGAGTGCTATGCAACGGTGAT
TCCAACGGAGGATAGGATAGAGGGATTGAGAGCGTTCAAAGAGAAGAGGA
AGCCGGTGTATAATGGGAGGTGAAGGAGGGAGTCAGGAAGGGAGGGACTC
TCTTTGTGAGAAGGTGGATGTAAAGACGAGTGGCAACAAGAGATATCGAA
TGAGTTTAATTTATGGGGTATGTGCATGAGGCATCAACACCAACTACAGA
AAGGAGAGAAAAAGAGAAACAGACACACATAGAATTGGAGAGTAGTCAAG
TTTGAAACACCTTGAGGAACGAACGACTGAAGATGTTCATG
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Coding sequence (CDS) from alignment at scaffold_7:1143480..1144720-

>mRNA_3300 ID=mRNA_3300|Name=jgi.p|Nanoce1779_2|585250|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_7:1143480..1144720- (Nannochloropsis oceanica)
ATGTTCCGCGCCATCACGATCGCCTGTTATCCCAGCTCTCAGCTTCTTCC
GTCCGCATTCCTGTCTCCTCGCTTTCGCACCAGCTCCTCCAAGTCGACCT
CCTCCCCCCCTCCTCCTCCTCAATCCTCTCCCCTCCTTATCACCCGTCAC
ACCCTCGACGGATTCCCTGCCATCGAGCACAAGGACGGCGTTATTGTTGA
GCTGGCTCTGAACCGGCCCGAGGCTCGGAATGCGCTGAACAAGTCGCTGG
TCTCGGAGCTTCATGAAGCCATCGCCTCCCTTGGGCAGGATAGCACTGCT
CGTGTTGTCGTCATAAAAAGCACCTCGCCCACCTCCGCGTTTTGCGCGGG
GGCCGATTTAAAAGAACGGACCAGTATGTCGGTTACTGAGGTGTCATCAT
TTGTCTCGAGCTTGCGGGCGTTGATGGATGGGGTGGAGAATCTACCAATA
CCGACTGTGGCTGTGATTGAGGGGGCTACGTTTGGCGGGGGATTAGAACT
GGCCCTGGCGTGCGATTTGCGTGTGGCGGGACCAAAGGCACAGATGGGAC
TGACGGAGACGAGCTTGGCGATCATTCCCGGAGCGGGGGGGACGCAGAGG
CTACCACGGGTGGTAGGGGAGGCGAAGGCCAAGGAGCTCATATTCAGGGC
AGTTAGGATAGGGGCACGAGAGGCATGGAGGGTAGGGTTAGTAAATGTGC
TGATGGAGGGGGACGGAAGGGGGGGGGGAGAGGAGGTGGGGAGGATTTGT
AGGGAGATGGCATCGAATGGGCCGGTGGCTGTGAGGGCGGCTAAGAAGGC
AGTTAGGGAGGGAATGCAGGTTGACTTGAGGACGGGGTTGGAGCTGGAGA
GGGAGTGCTATGCAACGGTGATTCCAACGGAGGATAGGATAGAGGGATTG
AGAGCGTTCAAAGAGAAGAGGAAGCCGGTGTATAATGGGAGGTGA
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Synonyms
Publications