NO05G04830, NO05G04830 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G04830
Unique Name	NO05G04830
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1201
Alignment location	chr5:1254652..1255852 -

Link to JBrowse

Properties


Property Name	Value
Description	ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:1254652..1255852 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0003824	catalytic activity

Vocabulary: **INTERPRO**
Term	Definition
IPR029045	ClpP/crotonase-like_dom
IPR001753	Crotonase_core_superfam

Homology

[Close]

BLAST of NO05G04830 vs. NCBI_GenBank
Match: EWM27915.1 (methylglutaconyl- mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 265.8 bits (678), Expect = 1.400e-67
Identity = 142/209 (67.94%), Postives = 170/209 (81.34%), Query Frame = 0

Query:   48 TRHTLDGFPAIEHKD-GVIVELALNRPEARNALNKSLVSELHEAIASLGQDSTARVVVIKSTSPTSAFCAGADLKERTSMSVTEVSSFVSSLRALMDGVENLPIPTVAVIEGAAFGGGLELALACDLRVAGPKAQMGLTETSLAIIPGAGGTQRLPRVVGEAKAKELIFRAVRIGAREAWRVGLVNVLMEGDGRGGERRWGGFVGRWHR 256
            TRH L G    E  + GVIV LALNRPEARNALNK+LV+ L++A++SL QD  ARV+++ S++PT AFCAGADLKER +MS +EVSSFVSSLRALMDGVENLP+P +AV+EG A+GGGLELALACD+RVAGPKA+MGLTETSLAIIPGAGGTQRLPR++G A+AKE++FRA RIG  EA R+GLVN +   +  GG R   G   RW R
Sbjct:   35 TRHDLGGKLVAESSNTGVIVTLALNRPEARNALNKALVTALNDALSSLAQDQIARVLLLTSSAPTKAFCAGADLKERANMSPSEVSSFVSSLRALMDGVENLPMPALAVLEGGAYGGGLELALACDMRVAGPKAEMGLTETSLAIIPGAGGTQRLPRLIGAARAKEMMFRATRIGTSEAHRLGLVNAVATEEEEGGVR---GLAARWCR 240

[Close]

BLAST of NO05G04830 vs. NCBI_GenBank
Match: KMQ93721.1 (methylglutaconyl- mitochondrial-like protein [Lasius niger])

HSP 1 Score: 193.7 bits (491), Expect = 6.900e-46
Identity = 104/184 (56.52%), Postives = 136/184 (73.91%), Query Frame = 0

Query:   58 IEHKDGVIVELALNRPEARNALNKSLVSELHEAIASLGQDSTARVVVIKSTSPTSAFCAGADLKERTSMSVTEVSSFVSSLRALMDGVENLPIPTVAVIEGAAFGGGLELALACDLRVAGPKAQMGLTETSLAIIPGAGGTQRLPRVVGEAKAKELIFRAVRIGAREAWRVGLVNVLMEGDGRG 242
            ++ KD  I  L LNRP ARN+L K LVS+L+EA+AS+ Q++  RV++I+S  P   FCAGADL+ER  M+ +EV  FVSSLRAL+  VENLP P ++ I+GAA GGGLELALA D+R+A  +A MGL ET LAI+PGAGGTQRLPR++G AKAKELI+ A  +   +A  +GLVN ++  +  G
Sbjct:   45 LDGKDNGIAVLGLNRPAARNSLGKILVSQLNEALASIKQNNKLRVLIIRSLVP-KVFCAGADLRERLKMNTSEVPQFVSSLRALVTDVENLPTPVISAIDGAALGGGLELALATDIRIASSEATMGLVETKLAIMPGAGGTQRLPRIIGAAKAKELIYTARILDGEQACTIGLVNEMVPQNKTG 227

[Close]

BLAST of NO05G04830 vs. NCBI_GenBank
Match: WP_026853165.1 (enoyl-CoA hydratase [Geothrix fermentans])

HSP 1 Score: 192.6 bits (488), Expect = 1.500e-45
Identity = 105/179 (58.66%), Postives = 132/179 (73.74%), Query Frame = 0

Query:   61 KDGVIVELALNRPEARNALNKSLVSELHEAIASLGQDSTARVVVIKSTSPTSAFCAGADLKERTSMSVTEVSSFVSSLRALMDGVENLPIPTVAVIEGAAFGGGLELALACDLRVAGPKAQMGLTETSLAIIPGAGGTQRLPRVVGEAKAKELIFRAVRIGAREAWRVGLVNVLMEGDG 240
            +DG IV L L+RP A+NAL + L++E  +A+A L  D  ARV+V+ S  P   FCAGADLKER  MS  E ++FV  LR     +E+LP+P +A +EGAAFGGGLELALA DLR+AG +A+MGL ETSLAIIPGAGGTQRLPR++G A+AKELIF A R+ A EA R+GLV+ +    G
Sbjct:   11 EDGGIVLLGLDRPAAKNALGRQLMTEFRQALADLRSDPAARVLVVHSLVP-GVFCAGADLKERAGMSQAEAATFVQGLRDAFTELEDLPMPVLAALEGAAFGGGLELALAADLRIAGAEARMGLVETSLAIIPGAGGTQRLPRLIGAARAKELIFTARRLDAAEAERLGLVDRVAPAGG 188

[Close]

BLAST of NO05G04830 vs. NCBI_GenBank
Match: XP_018681485.1 (PREDICTED: probable enoyl-CoA hydratase 2, mitochondrial isoform X1 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 192.6 bits (488), Expect = 1.500e-45
Identity = 107/185 (57.84%), Postives = 131/185 (70.81%), Query Frame = 0

Query:   51 TLDGFPAIEH---KDGVIVELALNRPEARNALNKSLVSELHEAIASLGQDSTARVVVIKSTSPTSAFCAGADLKERTSMSVTEVSSFVSSLRALMDGVENLPIPTVAVIEGAAFGGGLELALACDLRVAGPKAQMGLTETSLAIIPGAGGTQRLPRVVGEAKAKELIFRAVRIGAREAWRVGLVN 233
            TL G   IE     D  I+EL L+RPEA+NA+ K ++  L  AI ++G DS+A VVV+ S+ P   FCAGADLKER  MS +EV  FV+SLR+    +E L +PTVAVIEGAA GGGLE+AL+CDLRV G ++   L ET LAIIPGAGGTQRLPR+VG + AKELIF   RI  +EA  +GLVN
Sbjct:   49 TLSGPVRIERLSDSDSGIIELKLDRPEAKNAIGKEMLRGLQNAIETIGNDSSANVVVVSSSVP-KVFCAGADLKERKLMSASEVQQFVNSLRSTFSSLEELSVPTVAVIEGAALGGGLEMALSCDLRVCGEQSTFSLPETGLAIIPGAGGTQRLPRIVGRSAAKELIFTGRRISGKEAVSMGLVN 232

[Close]

BLAST of NO05G04830 vs. NCBI_GenBank
Match: XP_018681486.1 (PREDICTED: probable enoyl-CoA hydratase 2, mitochondrial isoform X2 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 192.6 bits (488), Expect = 1.500e-45
Identity = 107/185 (57.84%), Postives = 131/185 (70.81%), Query Frame = 0

Query:   51 TLDGFPAIEH---KDGVIVELALNRPEARNALNKSLVSELHEAIASLGQDSTARVVVIKSTSPTSAFCAGADLKERTSMSVTEVSSFVSSLRALMDGVENLPIPTVAVIEGAAFGGGLELALACDLRVAGPKAQMGLTETSLAIIPGAGGTQRLPRVVGEAKAKELIFRAVRIGAREAWRVGLVN 233
            TL G   IE     D  I+EL L+RPEA+NA+ K ++  L  AI ++G DS+A VVV+ S+ P   FCAGADLKER  MS +EV  FV+SLR+    +E L +PTVAVIEGAA GGGLE+AL+CDLRV G ++   L ET LAIIPGAGGTQRLPR+VG + AKELIF   RI  +EA  +GLVN
Sbjct:   49 TLSGPVRIERLSDSDSGIIELKLDRPEAKNAIGKEMLRGLQNAIETIGNDSSANVVVVSSSVP-KVFCAGADLKERKLMSASEVQQFVNSLRSTFSSLEELSVPTVAVIEGAALGGGLEMALSCDLRVCGEQSTFSLPETGLAIIPGAGGTQRLPRIVGRSAAKELIFTGRRISGKEAVSMGLVN 232

[Close]

BLAST of NO05G04830 vs. NCBI_GenBank
Match: XP_020175825.1 (probable enoyl-CoA hydratase 2, mitochondrial isoform X5 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 191.8 bits (486), Expect = 2.600e-45
Identity = 104/176 (59.09%), Postives = 124/176 (70.45%), Query Frame = 0

Query:   62 DGVIVELALNRPEARNALNKSLVSELHEAIASLGQDSTARVVVIKSTSPTSAFCAGADLKERTSMSVTEVSSFVSSLRALMDGVENLPIPTVAVIEGAAFGGGLELALACDLRVAGPKAQMGLTETSLAIIPGAGGTQRLPRVVGEAKAKELIFRAVRIGAREAWRVGLVNVLMEG 238
            D  IVEL L RPEARNA+ K ++  L  A+  +G D TA VV++ S+ P   FCAGADLKER  M  +EV  FV++LRA     E LPIPT+AV+EGAAFGGGLELAL+CDLR+ G  A   L ET LAIIPGAGGTQRLPR+VG A+AKELIF   R  A EA  +G+VN  + G
Sbjct:  111 DSGIVELRLERPEARNAIGKEMLKGLRSAMDKVGADPTANVVLVASSVP-KVFCAGADLKERRLMGPSEVREFVNTLRATFSSFEALPIPTIAVVEGAAFGGGLELALSCDLRICGESATFSLPETGLAIIPGAGGTQRLPRIVGRARAKELIFTGRRFDATEAVNMGVVNYCVPG 285

[Close]

BLAST of NO05G04830 vs. NCBI_GenBank
Match: XP_020175823.1 (probable enoyl-CoA hydratase 2, mitochondrial isoform X3 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 191.8 bits (486), Expect = 2.600e-45
Identity = 104/176 (59.09%), Postives = 124/176 (70.45%), Query Frame = 0

Query:   62 DGVIVELALNRPEARNALNKSLVSELHEAIASLGQDSTARVVVIKSTSPTSAFCAGADLKERTSMSVTEVSSFVSSLRALMDGVENLPIPTVAVIEGAAFGGGLELALACDLRVAGPKAQMGLTETSLAIIPGAGGTQRLPRVVGEAKAKELIFRAVRIGAREAWRVGLVNVLMEG 238
            D  IVEL L RPEARNA+ K ++  L  A+  +G D TA VV++ S+ P   FCAGADLKER  M  +EV  FV++LRA     E LPIPT+AV+EGAAFGGGLELAL+CDLR+ G  A   L ET LAIIPGAGGTQRLPR+VG A+AKELIF   R  A EA  +G+VN  + G
Sbjct:  111 DSGIVELRLERPEARNAIGKEMLKGLRSAMDKVGADPTANVVLVASSVP-KVFCAGADLKERRLMGPSEVREFVNTLRATFSSFEALPIPTIAVVEGAAFGGGLELALSCDLRICGESATFSLPETGLAIIPGAGGTQRLPRIVGRARAKELIFTGRRFDATEAVNMGVVNYCVPG 285

[Close]

BLAST of NO05G04830 vs. NCBI_GenBank
Match: BAJ98858.1 (predicted protein [Hordeum vulgare subsp. vulgare] >BAJ96177.1 predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 191.4 bits (485), Expect = 3.400e-45
Identity = 104/176 (59.09%), Postives = 124/176 (70.45%), Query Frame = 0

Query:   62 DGVIVELALNRPEARNALNKSLVSELHEAIASLGQDSTARVVVIKSTSPTSAFCAGADLKERTSMSVTEVSSFVSSLRALMDGVENLPIPTVAVIEGAAFGGGLELALACDLRVAGPKAQMGLTETSLAIIPGAGGTQRLPRVVGEAKAKELIFRAVRIGAREAWRVGLVNVLMEG 238
            D  IVEL L RPEARNA+ K ++  L  A+  +G D TA VV++ S+ P   FCAGADLKER  M  +EV  FV+SLRA     E LPIPT+AV+EGAAFGGGLELAL+CDLR+ G  A   L ET LAIIPGAGGTQRLPR+VG ++AKELIF   R  A EA  +G+VN  + G
Sbjct:   55 DSGIVELRLERPEARNAIGKEMLKGLRSAMDKVGADPTANVVLVASSVP-KVFCAGADLKERRLMGSSEVREFVNSLRATFSSFEALPIPTIAVVEGAAFGGGLELALSCDLRICGANATFSLPETGLAIIPGAGGTQRLPRIVGRSRAKELIFTGRRFDATEAVNMGVVNYRVPG 229

[Close]

BLAST of NO05G04830 vs. NCBI_GenBank
Match: XP_023703309.1 (methylglutaconyl-CoA hydratase, mitochondrial [Cryptotermes secundus] >PNF37949.1 Methylglutaconyl-CoA hydratase, mitochondrial [Cryptotermes secundus])

HSP 1 Score: 191.0 bits (484), Expect = 4.500e-45
Identity = 102/184 (55.43%), Postives = 131/184 (71.20%), Query Frame = 0

Query:   58 IEHKDGVIVELALNRPEARNALNKSLVSELHEAIASLGQDSTARVVVIKSTSPTSAFCAGADLKERTSMSVTEVSSFVSSLRALMDGVENLPIPTVAVIEGAAFGGGLELALACDLRVAGPKAQMGLTETSLAIIPGAGGTQRLPRVVGEAKAKELIFRAVRIGAREAWRVGLVNVLMEGDGRG 242
            +E KD  IV L LNRP+A+NALN++L ++   AI ++  D T RV++I+S  P   FCAGADLKER  ++  EV  FVS LR+L + VENLP+P +A ++GAA GGG ELALACD+R A   A +GL ET LAIIPGAGGTQRLPR+VG A AKELIF A  +   EA ++GLVN  ++ +  G
Sbjct:   39 LEEKDNGIVVLELNRPQAKNALNRTLATDFSSAIDAVKYDKTVRVLIIRSMVP-GIFCAGADLKERLKLTNQEVKIFVSKLRSLTNAVENLPMPVIAAVDGAALGGGFELALACDMRTASDNAMLGLVETKLAIIPGAGGTQRLPRLVGPAFAKELIFTAKTLTGAEAMKMGLVNYTVKQNSEG 221

[Close]

BLAST of NO05G04830 vs. NCBI_GenBank
Match: XP_018354077.1 (PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Trachymyrmex septentrionalis] >KYN44174.1 Enoyl-CoA hydratase domain-containing protein 2, mitochondrial [Trachymyrmex septentrionalis])

HSP 1 Score: 189.9 bits (481), Expect = 1.000e-44
Identity = 101/175 (57.71%), Postives = 131/175 (74.86%), Query Frame = 0

Query:   58 IEHKDGVIVELALNRPEARNALNKSLVSELHEAIASLGQDSTARVVVIKSTSPTSAFCAGADLKERTSMSVTEVSSFVSSLRALMDGVENLPIPTVAVIEGAAFGGGLELALACDLRVAGPKAQMGLTETSLAIIPGAGGTQRLPRVVGEAKAKELIFRAVRIGAREAWRVGLVN 233
            ++ KD  I  L LNRP ARN+  K+L+S+L+EA+AS+ Q++  RV++++S  P   FCAGADL+ER  M  +EV  FVSSLR LM  VE LP P ++ I+GAA GGGLELALA D+RVA  +A+MGL ET LAIIPGAGGTQRLPR++G AKAKELI+ A  +   +A ++GLVN
Sbjct:   45 LDGKDNGIAVLGLNRPVARNSFGKTLISQLNEALASIRQNNKLRVLIVRSLVP-KVFCAGADLRERLKMDNSEVLRFVSSLRELMTDVETLPTPVISAIDGAALGGGLELALASDIRVASSEAKMGLVETKLAIIPGAGGTQRLPRIIGAAKAKELIYTARILDGEQALQIGLVN 218

The following BLAST results are available for this feature:

BLAST of NO05G04830 vs. NCBI_GenBank

BLAST of NO05G04830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM27915.1	1.400e-67	67.94	methylglutaconyl- mitochondrial [Nannochloropsis g...	[more]
KMQ93721.1	6.900e-46	56.52	methylglutaconyl- mitochondrial-like protein [Lasi...	[more]
WP_026853165.1	1.500e-45	58.66	enoyl-CoA hydratase [Geothrix fermentans]	[more]
XP_018681485.1	1.500e-45	57.84	PREDICTED: probable enoyl-CoA hydratase 2, mitocho...	[more]
XP_018681486.1	1.500e-45	57.84	PREDICTED: probable enoyl-CoA hydratase 2, mitocho...	[more]
XP_020175825.1	2.600e-45	59.09	probable enoyl-CoA hydratase 2, mitochondrial isof...	[more]
XP_020175823.1	2.600e-45	59.09	probable enoyl-CoA hydratase 2, mitochondrial isof...	[more]
BAJ98858.1	3.400e-45	59.09	predicted protein [Hordeum vulgare subsp. vulgare]...	[more]
XP_023703309.1	4.500e-45	55.43	methylglutaconyl-CoA hydratase, mitochondrial [Cry...	[more]
XP_018354077.1	1.000e-44	57.71	PREDICTED: methylglutaconyl-CoA hydratase, mitocho...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL085	nonsL085	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR092	ncniR092	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR117	ngnoR117	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK003366	NSK003366	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO05G04830.1	NO05G04830.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585250	gene_3300	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100267g8	gene2647	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO05G04830.1	NO05G04830.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO05G04830 ID=NO05G04830|Name=NO05G04830|organism=Nannochloropsis oceanica|type=gene|length=1201bp
ACAGCCTTCTCGAGTCGAGCATGTTCCGCGCCATCACGATCGCCTGTTAT
CCCAGCTCTCAGCTTCTTCCGTCCGCATTCCTGTCTCCTCGCTTTCGCAC
CAGCTCCTCCAAGTCGACCTCCTCCCCCCCTCCTCCTCCTCAATCCTCTC
CCCTCCTTATCACCCGTCACACCCTCGACGGATTCCCTGCCATCGAGCAC
AAGGACGGCGTTATTGTTGAGCTGGCTCTGAACCGGCCCGAGGCTCGGAA
TGCGCTGAACAAGTCGCTGGTCTCGGAGCTTCATGAAGCCATCGCCTCCC
TTGGGCAGGATAGCACTGCTCGTGTTGTCGTCATAAAAAGCACCTCGCCC
ACCTCCGCGTTTTGCGCGGGGGCCGATTTAAAAGAACGGACCAGTATGTC
GGTTACTGAGGTGTCATCATTTGTCTCGAGCTTGCGGGCGTTGATGGATG
GGGTGGAGAATCTACCAATACCGACTGTGGCTGTGATTGAGGGGGCTGCG
TTTGGCGGGGGATTAGAACTGGCCCTGGCGTGCGATTTGCGTGTGGCGGG
ACCAAAGGCACAGATGGGACTGACGGAGACGAGCTTGGCGATCATTCCCG
GAGCGGGGGGGACGCAGAGGCTACCACGGGTGGTAGGGGAGGCGAAGGCC
AAGGAGCTCATATTCAGGGCAGTTAGGATAGGGGCACGAGAGGCATGGAG
GGTAGGGTTAGTAAATGTGCTGATGGAGGGGGACGGAAGGGGGGGGGAGA
GGAGGTGGGGAGGATTTGTAGGGAGATGGCATCGAATGGGCCGGTGGCTG
TGAGGGCGGCTAAGAAGGCAGTTAGGGAGGGAATGCAGGTTGACTTGAGG
ACGGGGTTGGAGCTGGAGAGGGAGTGCTATGCAACGGTGATTCCAACGGA
GGATAGGATAGAGGGATTGAGAGCGTTCAAAGAGAAGAGGAAGCCGGTGT
ATAATGGGAGGTGAAGGAGGGAGTCAGGAAGGGAGGGACTCTCTTTGTGA
GAAGGTGGATGTAAAGACGAGTGGCAACAAGAGATATCGAATGAGTTTAA
TTTATGGGGTATGTGCATGAGGCATCAACACCAACTACAGAAAGGAGAGA
AAAAGAGAAACAGACACACATAGAATTGGAGAGTAGTCAAGTTTGAAACA
CCTTGAGGAACGAACGACTGAAGATGTTCATGCTCATCCCACAGTATCAA
C

protein sequence of NO05G04830.1

>NO05G04830.1-protein ID=NO05G04830.1-protein|Name=NO05G04830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MFRAITIACYPSSQLLPSAFLSPRFRTSSSKSTSSPPPPPQSSPLLITRH
TLDGFPAIEHKDGVIVELALNRPEARNALNKSLVSELHEAIASLGQDSTA
RVVVIKSTSPTSAFCAGADLKERTSMSVTEVSSFVSSLRALMDGVENLPI
PTVAVIEGAAFGGGLELALACDLRVAGPKAQMGLTETSLAIIPGAGGTQR
LPRVVGEAKAKELIFRAVRIGAREAWRVGLVNVLMEGDGRGGERRWGGFV
GRWHRMGRWL*

Synonyms

Publications