jgi.p|Nanoce1779_2|526105, gene_2959 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|526105
Unique Namegene_2959
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_7:346147..348161 -

Link to JBrowse

Properties
Property NameValue
TranscriptId526191
ProteinId526105
Product namecholine dehydrogenase-like flavo protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:346147..348161 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008812choline dehydrogenase activity
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006066alcohol metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL092ncniL092Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G01710NO05G01710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526105mRNA_2959-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526105mRNA_2959Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|526105

>mRNA_2959-protein ID=mRNA_2959-protein|Name=jgi.p|Nanoce1779_2|526105|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MKAASWSSLSANYDYVIVGGGSAGCVLANRLSVNPRVKVLLLEAGGDDRF
IPFVHVPVGYLWSIANPKVDWCLKTEPVPGLHGRTLAYPRGKVLGGCSSI
NGMIYMRGQAEDYDGWAGEIGEGGREGGEKEDFGKAWSWKEVLPYFVKSE
DYAVKGAKDEMCGDVSTTAAAAATGVVHGVGGEWRVERQRLSWELLDKFR
DACAEHGIPKVTDFNKGFNEGSSYFHVNQWNGIRWNTSKAWLHPITTHRP
NLTVRTGVHVLKVILDPAGTTALGVEFAHFTSSTVIEKAYAGLETILAAG
AVGSPHLLQLSGIGPVDALRAVGVPVLHPLPGVGANLQDHLQLRTVFTVK
NVETLNEQYARWWGRVKMGWAYLRHRRGPLSMAPSQVGVFCKSDNTQSRA
NLQYHVQPLSLDKFGEPLHAFPAFTASVCHLRPSSRGHILLRDSDPRSPP
LIQPNYLSTSEDRAIAADAIRLTRRLVLESKALAPFSPQEYIPGSRYASQ
EELEAAAGRVGTTIFHPAGTCKMGRGDNAMAVLDGRMKVRGVRRLRVCDT
SVMPRITSGNTNSPTVMIAEKGSDFINQEHGTWGGQG*
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Synonyms
Publications