jgi.p|Nanoce1779_2|581222, gene_2697 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581222
Unique Namegene_2697
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_5:956276..959282 -

Link to JBrowse

Properties
Property NameValue
TranscriptId581308
ProteinId581222
Product name4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplast precursor
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:956276..959282 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00517454-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity
Vocabulary: Biological Process
TermDefinition
GO:0019288isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL071ncniL071Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03590NO07G03590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581222mRNA_2697-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581222mRNA_2697Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|581222

>mRNA_2697-protein ID=mRNA_2697-protein|Name=jgi.p|Nanoce1779_2|581222|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MSRPSTPLPRAAMLALLWASLASAFHAPASPAGPGVWGLKRRAPSAAALH
AAADGAEAALSPKQERRRIIQSPNFHRQGFKAESAGVESQMVSEFTSQLI
NEMKDTSYTYQKGDLTIKLAKSYGFCWGVDRAVAMAYEARAHFPEQRIHI
TNEIIHNPGVNERLAEMDIDFLPVQGGEKQFDHIEKNDVVILPAFGATIQ
EMQLLDKKGVQIVDTTCPWVAKVWTAVEKHRKLESTSVIHGKWAHEETIA
TASFADVFIIVKDIHEAEYVCNYIVNGGDKAEFMEKFKNAMSEGFDPDKD
LVKVGLANQTTMYKRETRAIGRLFEKTMMHKYGPAEVKDHYAEFDTICDA
TQERQDAITELMEEPKLDFILIVGGFDSSNTCHLKEIPHMQNIPSFHIDR
AERITADGSIEHREIDGSIVVTPNFLPDGPLTIGVTSGASTPDAYLQEAI
ERLFLLRSLKGANAPKKDAVNA*
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Synonyms
Publications