|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 581308 |
| Track | FilteredModels2 |
| ProteinId | 581222 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:956276..959282 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2697 ID=mRNA_2697|Name=jgi.p|Nanoce1779_2|581222|organism=Nannochloropsis oceanica|type=mRNA|length=2873bp
ACAGCCCCCGCGCCGTCCTTGCTGCAGTCGGCGTCTTGGTGCATCCAAGA
TGCCTGTCATTTTTTGCGGAGGACTGCGGGCGACGCGGTCGTGTTTTCTT
CCTTGGCTCCCTCCCCCTTCATTTCTTCGCGGGCCCCCGCATCCCAAGCC
CAACAACAAATTCACGATGAGGCCGGCGAGTCGTTAGGAGTGCAGATTAT
GTGGCTGCCGTTGTGATACACATTCTGTAGCGAGGCGATGGTTGCATACA
GCCGTGACGTTGCTGTGTGCTTCTTTGTTCTGCTCTGCTCGTCCCAACCA
CCCTCACCCTAATCCATCCTCTCCTCCTCGACTTACACACCATCTCACAG
ACATCAATATGTCACGGCCATCAACGCCCCTGCCGCGGGCGGCCATGCTG
GCCTTGTTGTGGGCTTCCCTTGCCTCCGCCTTCCACGCTCCTGCCTCCCC
TGCCGGTCCTGGCGTCTGGGGCTTGAAACGCCGCGCACCTTCTGCCGCTG
CCCTTCACGCGGCGGCAGATGGCGCCGAAGCTGCCTTGTCCCCGAAACAA
GAACGTCGTCGCATCATTCAATCGCCCAACTTCCACCGACAAGGCTTCAA
GGCGGAGAGTGCTGGGGTGGAGTCTCAGATGGTCTCTGAGTTCACTTCTC
AGCTCATTAACGAAATGAAGGACACAAGCTACACCTACCAAAAAGGAGAC
CTCACTATCAAGCTTGCCAAGAGCTACGGGTTCTGTTGGGGCGTGGACCG
GGCAGTGGCGATGGCGTACGAGGCCCGCGCGCACTTTCCTGAGCAACGTA
TCCATATTACCAATGAGATCATCCACAACCCTGGGGTTAATGAACGCTTA
GCTGAGATGGACATTGACTTCTTGCCCGTCCAGGGAGGGGAGAAACAATT
CGATCATATCGAGAAGAATGACGTGGTAATTTTGCCGGCGTTTGGGGCGA
CGATTCAAGAGATGCAATTGCTTGATAAGAAAGGGGTGCAGATTGTGGAC
ACGACCTGCCCGTGGGTGGCGAAGGTTTGGACGGCGGTCGAGAAACATCG
TAAGTTAGAGAGCACGAGTGTGATCCATGGAAAATGGGCGCACGAGGAAA
CGATTGCCACGGCAAGCTTTGCGGACGTGTTCATTATCGTGAAGGATATT
CACGAAGCGGAGTACGTTTGCAATTACATTGTCAATGGAGGAGATAAGGC
GGAGTTTATGGAGAAATTTAAGAATGCCATGTCGGAGGGCTTTGACCCGG
ACAAGGATCTAGTTAAGGTGGGGCTGGCGAACCAGACGACGATGTACAAG
AGGGAGACTCGGGCGATCGGCCGGTTGTTTGAAAAGACGATGATGCACAA
ATATGGGCCCGCTGAGGTGAAAGACCATTATGCCGAGTTTGATACGATTT
GCGACGCGACCCAAGAGAGACAGGATGCGATCACGGAGTTGATGGAGGAG
CCAAAGTTGGACTTTATTTTGATCGTGGGTGGGTTTGATTCGAGTAACAC
GTGTCATTTGAAAGAGATCCCGCACATGCAGAACATCCCGAGCTTTCACA
TTGACAGGGCCGAACGGATCACGGCAGACGGGAGCATTGAGCACCGGGAA
ATTGATGGATCCATTGTCGTGACACCCAACTTCCTGCCTGATGGACCCTT
GACCATCGGTGTGACCAGCGGCGCCTCCACCCCTGACGCGTACCTGCAGG
AGGCCATTGAGAGGCTGTTTCTACTGAGGTCCTTGAAGGGGGCGAATGCG
CCCAAGAAGGACGCGGTAAATGCTTAGATATCAGTATTCCATGAAAAAGC
CCAGGAAGGGAGAGAGAGAGATAAGAATGGTGGTTTCCTATGTTGCAGGA
GGAATCTATCGAGCGATCCTTGTCGAGGAGCGGGTGGATGTGCCCCAGGC
GGATTCTGTGAGTGGTGGGGTGCAGTGGAGGATGAGGAGGCGTAAGGGAG
GGAGTTGGGGAGGAAAGGAGGGAGGAAGGACATTCGGGGGACGGAGTTCC
ATTGAAGATGGAGAGGTTTATGAATATTTGAGGGGCATCTGCTCGATGAT
AGGAAGGTTGGAGGAGAATGAAAGAGGGAGGGTGGTTTTGTAGCATATCG
TTTCCCCCCCCCTACCATTGTTATGAAGGAGTGATTTGATGAGTGGTTTA
GCCATGTCGTATTTGTCTGTGATATTGTTTTTTCTTTTTAAATATACAGC
CGCGCCAGTTTTATCGAGCCAGATGGGTCTGATAGTGCGCGCCTGTGTGC
ATGAATGTGTGCGCAGGTGCGTCAACGTTCAAAATTAGGCACGCGTGTAC
CGGCCCTTGCGTCCGTCTGTGCCTCAGGATGATAGTTACGAAATAGAGAA
GAAGTAGGTGGTGGGAAGGGATGAAGAAAACAAAGAAAAAAAATTTCACA
AGAAGAATTGAGGAAATGCAAGGAGAAAAAGTGGAGAAGGGAAACAGGAA
AACGAGGCGGTAATGTGAGCCGATACGCGTTCAATCCGCACCTAACGACT
CAAAAAAGGCTTAACTCCAGTACTCGCCGGGCCTGGTTCTGTCCCCCCTC
CGTCCTTTCCATCCCTCTAGCCTCTCCTAACGCCCTCCACCCGTTGCAGT
ATGGGTGCGTTGGACAATCAAAACACGCTTTACAACCACTCACACGCACA
ACAACAAAACATTAAAAAAGTGACGACAATCCCAAAGCCATAACGAGAAT
GATTCTTCCTTTTCTAGCGCTATCATGGCAGGTAAATTGATGCAAAACAC
GAAGTCCCACGCAGGCGGGGCAGGGCTGACCCCATGCATTGTTTGTCTGA
TAAATAAATAAAAATACACTTATCTGCAAGCTGGGCAATCTATATCAACA
AAACGATAACTCCTCCCTCCCTC back to topprotein sequence of jgi.p|Nanoce1779_2|581222 >mRNA_2697-protein ID=mRNA_2697-protein|Name=jgi.p|Nanoce1779_2|581222|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MSRPSTPLPRAAMLALLWASLASAFHAPASPAGPGVWGLKRRAPSAAALH
AAADGAEAALSPKQERRRIIQSPNFHRQGFKAESAGVESQMVSEFTSQLI
NEMKDTSYTYQKGDLTIKLAKSYGFCWGVDRAVAMAYEARAHFPEQRIHI
TNEIIHNPGVNERLAEMDIDFLPVQGGEKQFDHIEKNDVVILPAFGATIQ
EMQLLDKKGVQIVDTTCPWVAKVWTAVEKHRKLESTSVIHGKWAHEETIA
TASFADVFIIVKDIHEAEYVCNYIVNGGDKAEFMEKFKNAMSEGFDPDKD
LVKVGLANQTTMYKRETRAIGRLFEKTMMHKYGPAEVKDHYAEFDTICDA
TQERQDAITELMEEPKLDFILIVGGFDSSNTCHLKEIPHMQNIPSFHIDR
AERITADGSIEHREIDGSIVVTPNFLPDGPLTIGVTSGASTPDAYLQEAI
ERLFLLRSLKGANAPKKDAVNA* back to topmRNA from alignment at scaffold_5:956276..959282- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2697 ID=mRNA_2697|Name=jgi.p|Nanoce1779_2|581222|organism=Nannochloropsis oceanica|type=mRNA|length=3007bp|location=Sequence derived from alignment at scaffold_5:956276..959282- (Nannochloropsis oceanica)
ACAGCCCCCGCGCCGTCCTTGCTGCAGTCGGCGTCTTGGTGCATCCAAGA
TGCCTGTCATTTTTTGCGGAGGACTGCGGGCGACGCGGTCGTGTTTTCTT
CCTTGGCTCCCTCCCCCTTCATTTCTTCGCGGGCCCCCGCATCCCAAGCC
CAACAACAAATTCACGATGAGGCCGGCGAGTCGTTAGGAGTGCAGATTAT
GTGGCTGCCGTTGTGATACACATTCTGTAGCGAGGCGATGGTTGCATACA
GCCGTGACGTTGCTGTGTGCTTCTTTGTTCTGCTCTGCTCGTCCCAACCA
CCCTCACCCTAATCCATCCTCTCCTCCTCGACTTACACACCATCTCACAG
ACATCAATATGTCACGGCCATCAACGCCCCTGCCGCGGGCGGCCATGCTG
GCCTTGTTGTGGGCTTCCCTTGCCTCCGCCTTCCACGCTCCTGCCTCCCC
TGCCGGTCCTGGCGTCTGGGGCTTGAAACGCCGCGCACCTTCTGCCGCTG
CCCTTCACGCGGCGGCAGATGGCGCCGAAGCTGCCTTGTCCCCGAAACAA
GAACGTCGTCGCATCATTCAATCGCCCAACTTCCACCGACAAGGCTTCAA
GGCGGAGAGTGCTGGGGTGGAGTCTCAGATGGTCTCTGAGTTCACTTCTC
AGCTCATTAACGAAATGAAGGACACAAGCTACACCTACCAAAAAGGAGAC
CTCACTATCAAGCTTGCCAAGAGCTACGGGTTCTGTTGGGGCGTGGACCG
GGCAGTGGCGATGGCGTACGAGGCCCGCGCGCACTTTCCTGAGCAACGTA
TCCATATTACCAATGAGATCATCCACAACCCTGGGGTTAATGAACGCTTA
GCTGAGATGGACATTGACTTCTTGCCCGTCCAGGGAGGGGAGAAACAATT
CGATCATATCGAGAAGAATGACGTGGTAATTTTGCCGGCGTTTGGGGCGA
CGATTCAAGAGATGCAATTGCTTGATAAGAAAGGGGTGCAGATTGTGGAC
ACGACCTGCCCGTGGGTGGCGAAGGTTTGGACGGCGGTCGAGAAACATCG
TAAGTTAGAGAGCACGAGTGTGATCCATGGAAAATGGGCGCACGAGGAAA
CGATTGCCACGGCAAGCTTTGCGGACGTGTTCATTATCGTGAAGGATATT
CACGAAGCGGAGTACGTTTGCAATTACATTGTCAATGGAGGAGATAAGGC
GGAGTTTATGGAGAAATTTAAGAATGCCATGTCGGAGGGCTTTGACCCGG
ACAAGGATCTAGTTAAGGTGGGGCTGGCGAACCAGACGACGATGTACAAG
AGGGAGACTCGGGCGATCGGCCGGTTGTTTGAAAAGACGATGATGCACAA
ATATGGGCCCGCTGAGGTGAAAGACCATTATGCCGAGTTTGATACGATTT
GCGACGCGACCCAAGAGAGACAGGATGCGATCACGGAGTTGATGGAGGAG
CCAAAGTTGGACTTTATTTTGATCGTGGGTGGGTTTGATTCGAGTAACAC
GTGTCATTTGAAAGAGATCCCGCACATGCAGAACATCCCGAGCTTTCACA
TTGACAGGGCCGAACGGATCACGGCAGACGGGAGCATTGAGCACCGGGAA
ATTGATGGGTAATGTCCTTCGTAGTGATATGTCCCTTTCTCCCTCCCAGC
CTTTCCTCCCCCTCTTCCTGTATTTTTGGTTTCTGCTTGCTGCTTGCAAG
GCGTTTTTAAATTCTAACTTTTCTTCTTTTTGTCCCACACAGATCCATTG
TCGTGACACCCAACTTCCTGCCTGATGGACCCTTGACCATCGGTGTGACC
AGCGGCGCCTCCACCCCTGACGCGTACCTGCAGGAGGCCATTGAGAGGCT
GTTTCTACTGAGGTCCTTGAAGGGGGCGAATGCGCCCAAGAAGGACGCGG
TAAATGCTTAGATATCAGTATTCCATGAAAAAGCCCAGGAAGGGAGAGAG
AGAGATAAGAATGGTGGTTTCCTATGTTGCAGGAGGAATCTATCGAGCGA
TCCTTGTCGAGGAGCGGGTGGATGTGCCCCAGGCGGATTCTGTGAGTGGT
GGGGTGCAGTGGAGGATGAGGAGGCGTAAGGGAGGGAGTTGGGGAGGAAA
GGAGGGAGGAAGGACATTCGGGGGACGGAGTTCCATTGAAGATGGAGAGG
TTTATGAATATTTGAGGGGCATCTGCTCGATGATAGGAAGGTTGGAGGAG
AATGAAAGAGGGAGGGTGGTTTTGTAGCATATCGTTTCCCCCCCCCTACC
ATTGTTATGAAGGAGTGATTTGATGAGTGGTTTAGCCATGTCGTATTTGT
CTGTGATATTGTTTTTTCTTTTTAAATATACAGCCGCGCCAGTTTTATCG
AGCCAGATGGGTCTGATAGTGCGCGCCTGTGTGCATGAATGTGTGCGCAG
GTGCGTCAACGTTCAAAATTAGGCACGCGTGTACCGGCCCTTGCGTCCGT
CTGTGCCTCAGGATGATAGTTACGAAATAGAGAAGAAGTAGGTGGTGGGA
AGGGATGAAGAAAACAAAGAAAAAAAATTTCACAAGAAGAATTGAGGAAA
TGCAAGGAGAAAAAGTGGAGAAGGGAAACAGGAAAACGAGGCGGTAATGT
GAGCCGATACGCGTTCAATCCGCACCTAACGACTCAAAAAAGGCTTAACT
CCAGTACTCGCCGGGCCTGGTTCTGTCCCCCCTCCGTCCTTTCCATCCCT
CTAGCCTCTCCTAACGCCCTCCACCCGTTGCAGTATGGGTGCGTTGGACA
ATCAAAACACGCTTTACAACCACTCACACGCACAACAACAAAACATTAAA
AAAGTGACGACAATCCCAAAGCCATAACGAGAATGATTCTTCCTTTTCTA
GCGCTATCATGGCAGGTAAATTGATGCAAAACACGAAGTCCCACGCAGGC
GGGGCAGGGCTGACCCCATGCATTGTTTGTCTGATAAATAAATAAAAATA
CACTTATCTGCAAGCTGGGCAATCTATATCAACAAAACGATAACTCCTCC
CTCCCTC back to topCoding sequence (CDS) from alignment at scaffold_5:956276..959282- >mRNA_2697 ID=mRNA_2697|Name=jgi.p|Nanoce1779_2|581222|organism=Nannochloropsis oceanica|type=CDS|length=2838bp|location=Sequence derived from alignment at scaffold_5:956276..959282- (Nannochloropsis oceanica)
ATCCATTGTCGTGACACCCAACTTCCTGCCTGATGGACCCTTGACCATCG
GTGTGACCAGCGGCGCCTCCACCCCTGACGCGTACCTGCAGGAGGCCATT
GAGAGGCTGTTTCTACTGAGGTCCTTGAAGGGGGCGAATGCGCCCAAGAA
GGACGCGGTAAATGCTTAGATGTCACGGCCATCAACGCCCCTGCCGCGGG
CGGCCATGCTGGCCTTGTTGTGGGCTTCCCTTGCCTCCGCCTTCCACGCT
CCTGCCTCCCCTGCCGGTCCTGGCGTCTGGGGCTTGAAACGCCGCGCACC
TTCTGCCGCTGCCCTTCACGCGGCGGCAGATGGCGCCGAAGCTGCCTTGT
CCCCGAAACAAGAACGTCGTCGCATCATTCAATCGCCCAACTTCCACCGA
CAAGGCTTCAAGGCGGAGAGTGCTGGGGTGGAGTCTCAGATGGTCTCTGA
GTTCACTTCTCAGCTCATTAACGAAATGAAGGACACAAGCTACACCTACC
AAAAAGGAGACCTCACTATCAAGCTTGCCAAGAGCTACGGGTTCTGTTGG
GGCGTGGACCGGGCAGTGGCGATGGCGTACGAGGCCCGCGCGCACTTTCC
TGAGCAACGTATCCATATTACCAATGAGATCATCCACAACCCTGGGGTTA
ATGAACGCTTAGCTGAGATGGACATTGACTTCTTGCCCGTCCAGGGAGGG
GAGAAACAATTCGATCATATCGAGAAGAATGACGTGGTAATTTTGCCGGC
GTTTGGGGCGACGATTCAAGAGATGCAATTGCTTGATAAGAAAGGGGTGC
AGATTGTGGACACGACCTGCCCGTGGGTGGCGAAGGTTTGGACGGCGGTC
GAGAAACATCGTAAGTTAGAGAGCACGAGTGTGATCCATGGAAAATGGGC
GCACGAGGAAACGATTGCCACGGCAAGCTTTGCGGACGTGTTCATTATCG
TGAAGGATATTCACGAAGCGGAGTACGTTTGCAATTACATTGTCAATGGA
GGAGATAAGGCGGAGTTTATGGAGAAATTTAAGAATGCCATGTCGGAGGG
CTTTGACCCGGACAAGGATCTAGTTAAGGTGGGGCTGGCGAACCAGACGA
CGATGTACAAGAGGGAGACTCGGGCGATCGGCCGGTTGTTTGAAAAGACG
ATGATGCACAAATATGGGCCCGCTGAGGTGAAAGACCATTATGCCGAGTT
TGATACGATTTGCGACGCGACCCAAGAGAGACAGGATGCGATCACGGAGT
TGATGGAGGAGCCAAAGTTGGACTTTATTTTGATCGTGGGTGGGTTTGAT
TCGAGTAACACGTGTCATTTGAAAGAGATCCCGCACATGCAGAACATCCC
GAGCTTTCACATTGACAGGGCCGAACGGATCACGGCAGACGGGAGCATTG
AGCACCGGGAAATTGATGGATCCATTGTCGTGACACCCAACTTCCTGCCT
GATGGACCCTTGACCATCGGTGTGACCAGCGGCGCCTCCACCCCTGACGC
GTACCTGCAGGAGGCCATTGAGAGGCTGTTTCTACTGAGGTCCTTGAAGG
GGGCGAATGCGCCCAAGAAGGACGCGGTAAATGCTTAGATGTCACGGCCA
TCAACGCCCCTGCCGCGGGCGGCCATGCTGGCCTTGTTGTGGGCTTCCCT
TGCCTCCGCCTTCCACGCTCCTGCCTCCCCTGCCGGTCCTGGCGTCTGGG
GCTTGAAACGCCGCGCACCTTCTGCCGCTGCCCTTCACGCGGCGGCAGAT
GGCGCCGAAGCTGCCTTGTCCCCGAAACAAGAACGTCGTCGCATCATTCA
ATCGCCCAACTTCCACCGACAAGGCTTCAAGGCGGAGAGTGCTGGGGTGG
AGTCTCAGATGGTCTCTGAGTTCACTTCTCAGCTCATTAACGAAATGAAG
GACACAAGCTACACCTACCAAAAAGGAGACCTCACTATCAAGCTTGCCAA
GAGCTACGGGTTCTGTTGGGGCGTGGACCGGGCAGTGGCGATGGCGTACG
AGGCCCGCGCGCACTTTCCTGAGCAACGTATCCATATTACCAATGAGATC
ATCCACAACCCTGGGGTTAATGAACGCTTAGCTGAGATGGACATTGACTT
CTTGCCCGTCCAGGGAGGGGAGAAACAATTCGATCATATCGAGAAGAATG
ACGTGGTAATTTTGCCGGCGTTTGGGGCGACGATTCAAGAGATGCAATTG
CTTGATAAGAAAGGGGTGCAGATTGTGGACACGACCTGCCCGTGGGTGGC
GAAGGTTTGGACGGCGGTCGAGAAACATCGTAAGTTAGAGAGCACGAGTG
TGATCCATGGAAAATGGGCGCACGAGGAAACGATTGCCACGGCAAGCTTT
GCGGACGTGTTCATTATCGTGAAGGATATTCACGAAGCGGAGTACGTTTG
CAATTACATTGTCAATGGAGGAGATAAGGCGGAGTTTATGGAGAAATTTA
AGAATGCCATGTCGGAGGGCTTTGACCCGGACAAGGATCTAGTTAAGGTG
GGGCTGGCGAACCAGACGACGATGTACAAGAGGGAGACTCGGGCGATCGG
CCGGTTGTTTGAAAAGACGATGATGCACAAATATGGGCCCGCTGAGGTGA
AAGACCATTATGCCGAGTTTGATACGATTTGCGACGCGACCCAAGAGAGA
CAGGATGCGATCACGGAGTTGATGGAGGAGCCAAAGTTGGACTTTATTTT
GATCGTGGGTGGGTTTGATTCGAGTAACACGTGTCATTTGAAAGAGATCC
CGCACATGCAGAACATCCCGAGCTTTCACATTGACAGGGCCGAACGGATC
ACGGCAGACGGGAGCATTGAGCACCGGGAAATTGATGG back to top
|