jgi.p|Nanoce1779_2|622582, gene_1871 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|622582
Unique Namegene_1871
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_4:228551..230376 +

Link to JBrowse

Properties
Property NameValue
TranscriptId622668
ProteinId622582
Product namecryptochrome DASH, chloroplastic/mitochondrial-like
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:228551..230376 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003904deoxyribodipyrimidine photo-lyase activity
GO:0003913DNA photolyase activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL059ncniL059Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00910NO04G00910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622582mRNA_1871-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622582mRNA_1871Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|622582

>mRNA_1871-protein ID=mRNA_1871-protein|Name=jgi.p|Nanoce1779_2|622582|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp
MSAAASSTAASAPSATKCGLVWYKCSDLRTLDHEPLSLAHAENNNVCHLF
CFDPRWFGEAGGPSAPGTLKTGALRARFLLEAVQDLKIRLQGNLVVKIGK
PEMEVPRLAKALGATTVYAHREVTSEELTVVKGVQEGLRKVTDGKSKLRE
AWGGYLYHINDLPFDDVKQNMPDVFTQFRKAVESKSRIRKYFPVPSALKP
PPSALSGAAAEESAVNAMPSPVTLQALGFTTEEDLEPVVGYGRDARVNPA
AVLMFKGGETAGLARLREYLWEKDLLKSYKETRNGMLGPDYSSKFSPWLA
TGSISPRVVFAEITKYERERVENDSTYWLVFELIWRDFFRYSGISFGNDF
FKLGGPQKNPKKYPWKRDGALFYAWKEGRTGYPLVDANMRELKATGFMSN
RGRQIVASFMTRDMGLDWRLGAYWFEECLLDYDPCSNYGNWCYAAGVGSD
PREDRYFSLPKQGGTYDPDAVYMKHWCPELKDLPADVLINPGRLDAVVRA
RYGVDEDVYPRPVVPLKFGGGGGVKGGGGKGGSGQGRGGGGGGGGKGRAP
FKGPRRPANRLQNDYF*
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Synonyms
Publications