NO04G00910, NO04G00910 (gene) Nannochloropsis oceanica

Overview
NameNO04G00910
Unique NameNO04G00910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2120
Alignment locationchr4:297931..300050 +

Link to JBrowse

Properties
Property NameValue
DescriptionCryptochrome chloroplastic mitochondrial-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:297931..300050 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036155Crypto/Photolyase_N_sf
IPR036134Crypto/Photolyase_FAD-like_sf
IPR006050DNA_photolyase_N
IPR005101Photolyase_FAD-bd/Cryptochr_C
IPR002081Cryptochrome/DNA_photolyase_1
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO04G00910 vs. NCBI_GenBank
Match: EWM28467.1 (cryptochrome chloroplastic mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 854.0 bits (2205), Expect = 3.100e-244
Identity = 416/595 (69.92%), Postives = 477/595 (80.17%), Query Frame = 0
Query:    1 MFGLPFRSAALATVVCFILHSATASAAARPSTRLSPAFGRALFSLSRVSSVPAQRRQQRGHSLSKHYTHSPISSXXXXXXXXXXXXXXXXXTKCGLVWYKCSDLRTLDHEPLSLAHAENNNVCHLFCFDPRWFGEAGGPSAPGTLKTGALRARFLLEAVQDLKIRLQGNLVVKIGKPEMEVPRLAKALGATTVYAHREVTSEELTVVKGVQEGLRKVTDGKSKLREAWGGYLYHINDLPFDDVKQNMPDVFTQFRKAVESKSRIRKYFPVPSALKPPPSALSGAAAEESAVNAMPSPVTLQALGFTTEEDLEPVVGYGRDARVNPAAVLMFKGGETAGLARLREYLWEKDLLKSYKETRNGMLGPDYSSKFSPWLATGSISPRVVFAEITKYERERVENDSTYWLVFELIRRDFFRYSGISFGNDFFKLGGPQKNPKKYPWKRDGALFYAWKEGRTGYPLVDANMRELKATGFMSNRGRQIVASFMTRDMGLDWRLGAYWFEECLLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQGGTYDPDAVYMKHWCPELKDLPADVLINPGRLDAVVRARYGVDEDVYPRPVVPLKFG 596
            MF L  RSAAL T+VC IL  A A      ++ ++ AF R   +    +S   Q      H L +    + ++S                  KCGLVWYKC+DLRTLDHEPLSLAHAEN++V HLFCFDPRWFG+AGGPSAPGTLKTG LRARFLLEAV+DLK RL GN++VK+GKPE EVPRLAKAL    VYAHREVTSEE+ VVKGV+EGL K T+GKS+ RE WG YLYHI+D+PF ++KQ+MP +FTQFRKAVESK+R+RKY P P +LKP P      +  E   NA+ SP+TL+ALGFT EEDL PV+ Y  D RV+P++VLMFKGGETAGLARL+EY W+KDLL+ YKETRNGMLGPDYSSKFSPWLATGSISPRV+FAEI KYERERVENDSTYWL FELI RDFFR+S ISFGN FFKLGGPQ NP+KYPWKRDGAL++AWKEG TGYPLVDANMRELK TGFMSNRGRQ+VASF+TRDMGL+WRLGAYWFEE LLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQG TYDP+A Y+KHWCPEL+ +PAD+L+NP R D  VRA++ V E+VYPR +VPLKFG
Sbjct:    1 MFPLLPRSAALTTLVCHILVRARAGFPHSSASTVT-AFVRPFLTPILATSGTGQ------HWLHRAVPRAAVAS-TVTMTNGEGTSSDTSVKKCGLVWYKCTDLRTLDHEPLSLAHAENSHVAHLFCFDPRWFGDAGGPSAPGTLKTGPLRARFLLEAVEDLKTRLGGNMIVKLGKPETEVPRLAKALKVDFVYAHREVTSEEVAVVKGVKEGLSKATEGKSQFRELWGNYLYHIDDVPFQNLKQDMPSIFTQFRKAVESKARVRKYLPKPPSLKPAPP----RSTVEENTNALLSPLTLEALGFTREEDLGPVLSYASDTRVDPSSVLMFKGGETAGLARLQEYFWDKDLLQKYKETRNGMLGPDYSSKFSPWLATGSISPRVIFAEIRKYERERVENDSTYWLFFELIWRDFFRFSAISFGNAFFKLGGPQGNPRKYPWKRDGALYHAWKEGLTGYPLVDANMRELKTTGFMSNRGRQLVASFLTRDMGLEWRLGAYWFEEVLLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQGATYDPEARYIKHWCPELRHIPADILLNPARFDGPVRAKFAVGEEVYPRQIVPLKFG 583          
BLAST of NO04G00910 vs. NCBI_GenBank
Match: CBJ48326.1 (cryptochrome 3 [Ectocarpus siliculosus])

HSP 1 Score: 515.0 bits (1325), Expect = 3.400e-142
Identity = 265/515 (51.46%), Postives = 334/515 (64.85%), Query Frame = 0
Query:   95 GLVWYKCSDLRTLDHEPLSLAHAENNNVCHLFCFDPRWFGEAGGPSAPGTLKTGALRARFLLEAVQDLKIRLQ---GNLVVKIGKPEMEVPRLAKALG----ATTVYAHREVTSEELTVVKGVQEGLRKVTDGKS--------KLREAWGGYLYHINDLPFDDVKQNMPDVFTQFRKAVESKSRIRKYFPVPSALKPPPSALSGAAAEESAVNAMPSPVTLQALGFTTEEDLEPVVGYGRDARVNPAAVLMFKGGETAGLARLREYLWEKDLLKSYKETRNGMLGPDYSSKFSPWLATGSISPRVVFAEITKYERERVENDSTYWLVFELIRRDFFRYSGISFGNDFFKLGGPQKNPKKYPWKRDGALFYAWKEGRTGYPLVDANMRELKATGFMSNRGRQIVASFMTRDMGLDWRLGAYWFEECLLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQGGTYDPDAVYMKHWCPELKDLPADVLINPGRLDAVVRARYGVDEDVYPRPVVPLKF 595
            G+VW+KC+DLR  DHEPL+LAH  +++V H+FC D RWFG     S  GT +  A R RFLLE+V DL+ RL+    +L+++ G PE  +P +A  LG    A TVYAH ++ SEE  V   V+  L  V              + E WG  L+  +DLP+ D    +P+VFT FRKAVE   +IR   P+PS  +P P+ L   A   +   A+P   T + LG  T  +        RDAR    +VL F GGETAGL R++ Y+WE+D L+ YK TRNG+LG  +SSKFSPWLA G +SPR +  EI KYE +R+ NDSTYWL+FEL+ RDFFRYS + +GN  F LGG +++  +  W+ D  L  AWKEGRTGYP VDANMRELKA+GFMSNRGRQ+VASF T+D+ +DWRLGA  FEE LLDYDP SNYGNW Y AGVG DPREDRYFS+ KQ  TYD D  Y++HW PEL  L  + L + G + A +R  + V   VYP PVVPLKF
Sbjct:   24 GVVWFKCTDLRLEDHEPLALAHRNSSHVAHVFCIDDRWFGH----SRRGTRRMSAARCRFLLESVADLQTRLRAKGSDLLIRRGHPENAIPAVAARLGSGASAVTVYAHPDLCSEENDVHAAVKSALSLVGSAGGVGGDATGVSVTEVWGNTLHDPSDLPY-DFPNGLPEVFTPFRKAVEPNCKIRSPVPLPSPFRPLPAGLHDNAVTPTLTVAIP---TTEELGLGTAPE--------RDAR----SVLHFIGGETAGLRRVQTYIWEEDHLREYKVTRNGLLGGGFSSKFSPWLALGCLSPRTIVKEIRKYETDRIANDSTYWLIFELLVRDFFRYSAVKYGNAIFHLGGSRRDSDRQTWRDDAGLLAAWKEGRTGYPFVDANMRELKASGFMSNRGRQVVASFFTKDLEMDWRLGAEHFEEYLLDYDPASNYGNWNYVAGVGFDPREDRYFSVEKQARTYDADGDYVRHWLPELAMLTTEALQSAGGITATLREVHSVPTSVYPDPVVPLKF 518          
BLAST of NO04G00910 vs. NCBI_GenBank
Match: CBJ48325.1 (cryptochrome 2 [Ectocarpus siliculosus])

HSP 1 Score: 510.8 bits (1314), Expect = 6.500e-141
Identity = 261/516 (50.58%), Postives = 333/516 (64.53%), Query Frame = 0
Query:   95 GLVWYKCSDLRTLDHEPLSLAHAENNNVCHLFCFDPRWFGEAGGPSAPGTLKTGALRARFLLEAVQDLKIRLQ---GNLVVKIGKPEMEVPRLAKALG-----ATTVYAHREVTSEELTVVKGVQEGL------RKVTDGKSKLREAWGGYLYHINDLPFDDVKQNMPDVFTQFRKAVESK--SRIRKYFPVPSALKPPPSALSGAAAEESAVNAMPSPVTLQALGFTTEEDLEPVVGYGRDARVNPAAVLMFKGGETAGLARLREYLWEKDLLKSYKETRNGMLGPDYSSKFSPWLATGSISPRVVFAEITKYERERVENDSTYWLVFELIRRDFFRYSGISFGNDFFKLGGPQKNPKKYPWKRDGALFYAWKEGRTGYPLVDANMRELKATGFMSNRGRQIVASFMTRDMGLDWRLGAYWFEECLLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQGGTYDPDAVYMKHWCPELKDLPADVLINPGRLDAVVRARYGVDEDVYPRPVVPLKF 595
            G+VW+K SDLR  DHEPL+LAH E+  V H+FC D RWFG+    +  GT K  A R RFLLE+V DL+ RL+    +L+V+ G PE  +P LA  LG       T++AH +V SEE  V   V+  L               ++EAWG  L+ + DLPF D    +P++FTQFRK+VESK   ++R   P+PS  +P P+  +    E SA  A+P   T + LG  T  +        RDAR    +V  F GGETAGL R++ Y+W++D L+ YK TRNG+LG  +SSKFSPWLA G +SPR +  EI KYE +R+ NDSTYWL+FEL+ RDFFRYS +  GN  F LGGP+++  +  W  D     AWKEG TGYPL+DANMRELKA+GFMSNRGRQ+VASF TRD+ +DWRLGA  FEE LLD+DP SN+GNW Y AGVGSDPRE RYF++ KQ  TYD +  YM+HW PEL  LP   L  PG +  ++R  + +   VYP P+ PLKF
Sbjct:   25 GIVWFKYSDLRLEDHEPLALAHRESAQVAHVFCIDDRWFGQ----TRRGTSKMSAARCRFLLESVADLRARLRERGSDLLVRRGHPEDVIPALAARLGGGSVAGVTLFAHTDVCSEEADVHAAVKSALAXXXXXXXXXXAAVAVKEAWGNTLHDVADLPF-DFPSGVPEIFTQFRKSVESKYSCKMRPPVPLPSPFRPVPTGTTQDDGEASAPGAIP---TTEELGLGTAPE--------RDAR----SVFPFNGGETAGLRRVQSYIWDEDRLREYKVTRNGLLGSGFSSKFSPWLALGCLSPRTIVKEIRKYETDRIANDSTYWLIFELLWRDFFRYSAVKNGNSIFHLGGPRRDTGRQRWLDDAGSLEAWKEGETGYPLIDANMRELKASGFMSNRGRQVVASFFTRDLQMDWRLGAEHFEEYLLDHDPASNWGNWNYVAGVGSDPREGRYFNIEKQAKTYDAEGAYMRHWLPELAALPTTALQTPGGITTMLRHMHAIPTSVYPDPIAPLKF 520          
BLAST of NO04G00910 vs. NCBI_GenBank
Match: XP_021729270.1 (LOW QUALITY PROTEIN: cryptochrome DASH, chloroplastic/mitochondrial-like [Chenopodium quinoa])

HSP 1 Score: 502.7 bits (1293), Expect = 1.800e-138
Identity = 260/516 (50.39%), Postives = 341/516 (66.09%), Query Frame = 0
Query:   96 LVWYKCSDLRTLDHEPLSLAHAENNNVCHLFCFDPRWFGEAGGPSAPGTLKTGALRARFLLEAVQDLKIRLQG---NLVVKIGKPEMEVPRLAKALGATTVYAHREVTSEELTVVKGVQEGLRKV----TDGKS---------KLREAWGGYLYHINDLPFDDVKQNMPDVFTQFRKAVESKSRIRKYFPVPSALKPPPSALSGAAAEESAVNAMPSPVTLQALGFTTEEDLEPVVGYGRDARVNPAAVLMFKGGETAGLARLREYLWEKDLLKSYKETRNGMLGPDYSSKFSPWLATGSISPRVVFAEITKYERERVENDSTYWLVFELIRRDFFRYSGISFGNDFFKLGGPQKNPKKYPWKRDGALFYAWKEGRTGYPLVDANMRELKATGFMSNRGRQIVASFMTRDMGLDWRLGAYWFEECLLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQGGTYDPDAVYMKHWCPELKDLPADVLINPGRLDAVVRARYGVDEDVYPRPVVPLKFG 596
            ++W++ +DLR LD+E L  A A +  V  ++C DPR FG       P   KTGALRA+FL+E + DL+  LQ    NL++K GKPE  +P LA+  GA T+YA +E  SEEL V   V +GL+KV    T G+S         KL+  WG  LYH NDLPF+   +++PDV+ QFRK++ESKS+IR +  +P++L PPP            +    +  ++  LG   +E     V  G          L+F GGE+A L+R+ EY W++DLLK+YKETRNGM+G +YS+KFSPWLA+GS+SPR+++ E+ +YERERV NDSTYW++FELI RD+FR+  I +GN  F LGGP+    K  W +D ALF +W++G+TGYPL+DANM+EL  TGFMSNRGRQIV SF+ RDMG+DWR+GA WFE CLLDYDPCSNYGNW Y AGVG+DPREDRYFS+PKQ   YDP+  Y+ +W PEL+ LP D    PG                Y +P+VPLKFG
Sbjct:   57 IIWFR-NDLRVLDNEALFKAWASSEVVLPVYCVDPRHFGTTYSFGFP---KTGALRAQFLIECLADLRKNLQKHGLNLLIKHGKPEEILPALAETFGAHTIYAQKETCSEELNVEVRVNKGLQKVSLPSTVGQSTAQNGAKTPKLQLLWGATLYHKNDLPFN--VKDIPDVYXQFRKSIESKSKIRAFIKIPASLGPPPK-----------IEDWGTIPSIDQLGLHNQE-----VDKG----------LVFVGGESASLSRVHEYFWKQDLLKTYKETRNGMIGSEYSTKFSPWLASGSLSPRLIYEEVKRYERERVANDSTYWVLFELIWRDYFRFISIKYGNSIFHLGGPRHLDNK--WSQDTALFESWRDGKTGYPLIDANMKELATTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQVYDPEGEYVAYWLPELRRLPKDKRHFPG--------------FSYLKPIVPLKFG 524          
BLAST of NO04G00910 vs. NCBI_GenBank
Match: XP_021744326.1 (cryptochrome DASH, chloroplastic/mitochondrial-like [Chenopodium quinoa])

HSP 1 Score: 502.7 bits (1293), Expect = 1.800e-138
Identity = 264/514 (51.36%), Postives = 341/514 (66.34%), Query Frame = 0
Query:   96 LVWYKCSDLRTLDHEPLSLAHAENNNVCHLFCFDPRWFGEAGGPSAPGTLKTGALRARFLLEAVQDLKIRLQG---NLVVKIGKPEMEVPRLAKALGATTVYAHREVTSEELTVVKGVQEGLRKVT----------DGKS-KLREAWGGYLYHINDLPFDDVKQNMPDVFTQFRKAVESKSRIRKYFPVPSALKPPPSALSGAAAEESAVNAMPSPVTLQALGFTTEEDLEPVVGYGRDARVNPAAVLMFKGGETAGLARLREYLWEKDLLKSYKETRNGMLGPDYSSKFSPWLATGSISPRVVFAEITKYERERVENDSTYWLVFELIRRDFFRYSGISFGNDFFKLGGPQKNPKKYPWKRDGALFYAWKEGRTGYPLVDANMRELKATGFMSNRGRQIVASFMTRDMGLDWRLGAYWFEECLLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQGGTYDPDAVYMKHWCPELKDLPADVLINPGRLDAVVRARYGVDEDVYPRPVVPLKFG 596
            ++W++ +DLR LD+E L  A A +  V  ++C DPR FG       P   KTGALRA+FL++ + DL+  LQ    NL+VK GKPE  +P LA+  GA T+YA +E  SEEL V   V +GL+KV+            KS KL+  WG  LY+  DLPFD   +++PDV+TQFRK++ESKS+IR    +PS+L PPP        E     A+PS   +  LG   +E     V  G          L+F GGE+A L+R+ EY W++DLLK+YKETRNGM+G +YS+KFSPWLA+GSISPR+++ E+ +YERER+ NDSTYW++FELI RD+FR+  I +GN  F LGGP+    K  W +D ALF +W++G+TGYPL+DANM+EL  TGFMSNRGRQIV SF+ RDMG+DWR+GA WFE CLLDYDPCSNYGNW Y AGVG+DPREDRYFS+PKQ   YDP+  Y+ +W PEL+ LP D    PG                Y +P+VPLKFG
Sbjct:   98 IIWFR-NDLRVLDNEALFKAWASSEVVLPVYCVDPRHFGTTYSFGFP---KTGALRAQFLIQCLADLRKNLQKHGLNLLVKHGKPEDIIPALAETFGAHTIYAQKETCSEELNVEVRVNKGLQKVSLPSTVSTAQNAAKSPKLQLLWGATLYYKTDLPFD--VRDIPDVYTQFRKSIESKSKIRACVKIPSSLGPPP--------EIEDWGAIPS---IDQLGLHNQE-----VDKG----------LVFIGGESASLSRVHEYFWKQDLLKTYKETRNGMIGSEYSTKFSPWLASGSISPRLIYEEVKRYERERIANDSTYWVLFELIWRDYFRFISIKYGNSIFHLGGPRHLANK--WSQDTALFESWRDGKTGYPLIDANMKELATTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQVYDPEGEYVAYWLPELRRLPKDKRHFPG--------------FSYLKPIVPLKFG 563          
BLAST of NO04G00910 vs. NCBI_GenBank
Match: KNA22388.1 (hypothetical protein SOVF_034370 [Spinacia oleracea])

HSP 1 Score: 500.4 bits (1287), Expect = 8.700e-138
Identity = 262/516 (50.78%), Postives = 335/516 (64.92%), Query Frame = 0
Query:   96 LVWYKCSDLRTLDHEPLSLAHAENNNVCHLFCFDPRWFGEAGGPSAPGTLKTGALRARFLLEAVQDLKIRLQG---NLVVKIGKPEMEVPRLAKALGATTVYAHREVTSEELTVVKGVQEGLRKV----TDGKS---------KLREAWGGYLYHINDLPFDDVKQNMPDVFTQFRKAVESKSRIRKYFPVPSALKPPPSALSGAAAEESAVNAMPSPVTLQALGFTTEEDLEPVVGYGRDARVNPAAVLMFKGGETAGLARLREYLWEKDLLKSYKETRNGMLGPDYSSKFSPWLATGSISPRVVFAEITKYERERVENDSTYWLVFELIRRDFFRYSGISFGNDFFKLGGPQKNPKKYPWKRDGALFYAWKEGRTGYPLVDANMRELKATGFMSNRGRQIVASFMTRDMGLDWRLGAYWFEECLLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQGGTYDPDAVYMKHWCPELKDLPADVLINPGRLDAVVRARYGVDEDVYPRPVVPLKFG 596
            ++W++ +DLR LD+E L  A A +  V  ++C DPR FG       P   KTGALR RFL+E + DL+  L+    NL++K GKPE  +P LA+  GA T+YA +E  SEEL     + +GL+KV    T G S         +L+  WG  LYH NDLPF+    ++PDV+TQFRK++ESK +IR    +PS+L PPP        E     A+PS   +   G   +E     V  G          L+F GGE+A L+R+ EY W++DLLK+YKETRNGM+G DYS+KFSPWLA+GS+SPR ++ E+ +YERER+ NDSTYW++FELI RD+FR+  I +GN  F LGGP+    K  W +D  LF +WKEG+TGYPL+DANM+EL  TGFMSNRGRQIV SF+ RDMG+DWR+GA WFE CLLDYDPCSNYGNW Y AGVG+DPREDRYFS+PKQ   YDP+  Y+ +W PELK LP D    PG                Y +P+VPLKFG
Sbjct:   60 ILWFR-NDLRVLDNEALFKAWASSEVVLPVYCVDPRLFGTTYSFGFP---KTGALRTRFLIECLADLRKNLRKHDLNLLIKHGKPEEILPALAETFGAHTIYAQKETCSEELNAETRLNKGLQKVSLPSTAGTSASQNGAKTPRLQLVWGATLYHKNDLPFN--MSDIPDVYTQFRKSIESKCKIRACIKIPSSLGPPP--------EIQDWGAIPS---IDQFGLQNQE-----VDKG----------LLFVGGESASLSRVHEYFWKQDLLKTYKETRNGMIGSDYSTKFSPWLASGSLSPRFIYEEVMRYERERLANDSTYWVLFELIWRDYFRFLSIKYGNSIFHLGGPRHLDNK--WSQDKTLFESWKEGKTGYPLIDANMKELATTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQVYDPEGEYVAYWLPELKRLPKDKRHFPG--------------FSYLKPIVPLKFG 527          
BLAST of NO04G00910 vs. NCBI_GenBank
Match: XP_021860812.1 (cryptochrome DASH, chloroplastic/mitochondrial [Spinacia oleracea])

HSP 1 Score: 500.4 bits (1287), Expect = 8.700e-138
Identity = 262/516 (50.78%), Postives = 335/516 (64.92%), Query Frame = 0
Query:   96 LVWYKCSDLRTLDHEPLSLAHAENNNVCHLFCFDPRWFGEAGGPSAPGTLKTGALRARFLLEAVQDLKIRLQG---NLVVKIGKPEMEVPRLAKALGATTVYAHREVTSEELTVVKGVQEGLRKV----TDGKS---------KLREAWGGYLYHINDLPFDDVKQNMPDVFTQFRKAVESKSRIRKYFPVPSALKPPPSALSGAAAEESAVNAMPSPVTLQALGFTTEEDLEPVVGYGRDARVNPAAVLMFKGGETAGLARLREYLWEKDLLKSYKETRNGMLGPDYSSKFSPWLATGSISPRVVFAEITKYERERVENDSTYWLVFELIRRDFFRYSGISFGNDFFKLGGPQKNPKKYPWKRDGALFYAWKEGRTGYPLVDANMRELKATGFMSNRGRQIVASFMTRDMGLDWRLGAYWFEECLLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQGGTYDPDAVYMKHWCPELKDLPADVLINPGRLDAVVRARYGVDEDVYPRPVVPLKFG 596
            ++W++ +DLR LD+E L  A A +  V  ++C DPR FG       P   KTGALR RFL+E + DL+  L+    NL++K GKPE  +P LA+  GA T+YA +E  SEEL     + +GL+KV    T G S         +L+  WG  LYH NDLPF+    ++PDV+TQFRK++ESK +IR    +PS+L PPP        E     A+PS   +   G   +E     V  G          L+F GGE+A L+R+ EY W++DLLK+YKETRNGM+G DYS+KFSPWLA+GS+SPR ++ E+ +YERER+ NDSTYW++FELI RD+FR+  I +GN  F LGGP+    K  W +D  LF +WKEG+TGYPL+DANM+EL  TGFMSNRGRQIV SF+ RDMG+DWR+GA WFE CLLDYDPCSNYGNW Y AGVG+DPREDRYFS+PKQ   YDP+  Y+ +W PELK LP D    PG                Y +P+VPLKFG
Sbjct:  101 ILWFR-NDLRVLDNEALFKAWASSEVVLPVYCVDPRLFGTTYSFGFP---KTGALRTRFLIECLADLRKNLRKHDLNLLIKHGKPEEILPALAETFGAHTIYAQKETCSEELNAETRLNKGLQKVSLPSTAGTSASQNGAKTPRLQLVWGATLYHKNDLPFN--MSDIPDVYTQFRKSIESKCKIRACIKIPSSLGPPP--------EIQDWGAIPS---IDQFGLQNQE-----VDKG----------LLFVGGESASLSRVHEYFWKQDLLKTYKETRNGMIGSDYSTKFSPWLASGSLSPRFIYEEVMRYERERLANDSTYWVLFELIWRDYFRFLSIKYGNSIFHLGGPRHLDNK--WSQDKTLFESWKEGKTGYPLIDANMKELATTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQVYDPEGEYVAYWLPELKRLPKDKRHFPG--------------FSYLKPIVPLKFG 568          
BLAST of NO04G00910 vs. NCBI_GenBank
Match: XP_024358644.1 (cryptochrome DASH, chloroplastic/mitochondrial-like isoform X1 [Physcomitrella patens] >PNR31732.1 hypothetical protein PHYPA_025855 [Physcomitrella patens])

HSP 1 Score: 498.8 bits (1283), Expect = 2.500e-137
Identity = 259/510 (50.78%), Postives = 329/510 (64.51%), Query Frame = 0
Query:   92 TKCGLVWYKCSDLRTLDHEPLSLAHAENNNVCHLFCFDPRWFGEAGGPSAPGTLKTGALRARFLLEAVQDLK--IRLQG-NLVVKIGKPEMEVPRLAKALGATTVYAHREVTSEELTVVKGVQEGLRKVTDG---KSKLREAWGGYLYHINDLPFDDVKQNMPDVFTQFRKAVESKSRIRKYFPVPSALKPPPSALSGAAAEESAVNAMPSPVTLQALGFTTEEDLEPVVGYGRDARVNPAAVLMFKGGETAGLARLREYLWEKDLLKSYKETRNGMLGPDYSSKFSPWLATGSISPRVVFAEITKYERERVENDSTYWLVFELIRRDFFRYSGISFGNDFFKLGGPQKNPKKYPWKRDGALFYAWKEGRTGYPLVDANMRELKATGFMSNRGRQIVASFMTRDMGLDWRLGAYWFEECLLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQGGTYDPDAVYMKHWCPELKDLPADVLINPGRLDAVVRARYGVDEDVYPRPVVPLKFG 596
            T   +VW++ +DLR  D+E L  A   +  V  L+  DPR +G+      P   KTG LRA+F++E+V +L+  +R +G +L+V+ GKPE  VP +AK++GA TVYAH+E  SEE TV  GV+ GL  +  G   + +L   WGG LYH++DLPF      +PDV+TQFRK VE   ++R    +P+ + P P +LS    E   +       T+  LG    E              +P  V+ F+GGETA LARL++Y W KD LK YKETRNGMLG +YS+KFSPWLA G +SPR +  E+ +YE ERV NDSTYW++FELI RD+FR+  I +GN  F LGGP+K   K  W ++  LF AW+EGRTGYPL+DANM+EL ATGFMSNRGRQIV SF+ RD+GLDWR+G  WFE CLLDYDPCSNYGNW Y AGVG+DPREDRYFS+PKQ  TYDP+  Y+ HW P LK  P      PG              D Y RP+VPLKFG
Sbjct:   63 TGIAIVWFR-NDLRISDNEALLKAWQSSQAVVPLYVVDPRLYGQTYHFGFP---KTGELRAQFIMESVANLRDNLRQRGLDLIVRQGKPEDVVPSIAKSIGAHTVYAHKETCSEETTVETGVKRGLANLEGGPKMQIRLDFVWGGTLYHLDDLPFS--PSELPDVYTQFRKGVEYNCKVRPALKMPTQMGPLPESLSEKIGELGDI------PTMAELGLKYREQ-------------SPLGVMHFEGGETAALARLQDYFWNKDQLKIYKETRNGMLGANYSTKFSPWLAHGCLSPRTIHDEVKRYETERVANDSTYWVLFELIWRDYFRFVSIKYGNAIFHLGGPRKVVGK-RWSQNRELFEAWREGRTGYPLIDANMKELAATGFMSNRGRQIVCSFLVRDLGLDWRMGGEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQSATYDPEGEYVAHWLPSLKQSPPKQRNFPG--------------DAYLRPIVPLKFG 532          
BLAST of NO04G00910 vs. NCBI_GenBank
Match: PKA50837.1 (Cryptochrome DASH, chloroplastic/mitochondrial [Apostasia shenzhenica])

HSP 1 Score: 498.8 bits (1283), Expect = 2.500e-137
Identity = 256/487 (52.57%), Postives = 331/487 (67.97%), Query Frame = 0
Query:   96 LVWYKCSDLRTLDHEPLSLAHAENNNVCHLFCFDPRWFGEAGGPSAPGTLKTGALRARFLLEAVQDLKIRLQG---NLVVKIGKPEMEVPRLAKALGATTVYAHREVTSEELTVVKGVQEGLRKVT----------DGKSKLREAWGGYLYHINDLPFDDVKQNMPDVFTQFRKAVESKSRIRKYFPVPSALKPPPSALSGAAAEESAVNAMPSPVTLQALGFTTEEDLEPVVGYGRDARVNPAAVLMFKGGETAGLARLREYLWEKDLLKSYKETRNGMLGPDYSSKFSPWLATGSISPRVVFAEITKYERERVENDSTYWLVFELIRRDFFRYSGISFGNDFFKLGGPQKNPKKYPWKRDGALFYAWKEGRTGYPLVDANMRELKATGFMSNRGRQIVASFMTRDMGLDWRLGAYWFEECLLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQGGTYDPDAVYMKHWCPELKDLPADVLINPGR 570
            +VW++ +DLR LD+E L  A A +  V  ++C DPR FG       P   KTGALRA+FLLE + DLK  L+    +L+V+ G+PE  +P +AK +GA TV+A  E  SEEL V   V + L++V           + K +L+  WG  +YHI+DLPFD   Q++PDV+T FRK+VESKS IR+ + +P +L P PS+   +  +     ++PS   L      +++ +                   F GGE A L RL+EY WEKDLLK YKETRNGM+GPDYS+KFSPWLA+GS+SPR V+AE+ +YE+ERV NDSTYW++FELI RD+FR+  + +GN  F LGGP+K   K  WK+D +LF +WK+G TGYPLVDANM+EL ATGFMSNRGRQ+V SF+ RDMGLDWR+GA WFE CLLDYDPCSNYGNW Y AGVG+DPREDRYFS+PKQ  TYDP+  Y+ +W PEL+ LP +    PGR
Sbjct:   78 IVWFR-NDLRVLDNEALLQAWATSAAVLPVYCVDPRHFGATHYFGFP---KTGALRAKFLLECLHDLKKNLKDRGLDLLVRHGRPEDILPTIAKVVGAHTVFAQNETCSEELEVEMLVSKALQQVALLQQETSNSKNMKLELKLIWGSTMYHIDDLPFD--TQSLPDVYTLFRKSVESKSSIRECYQLPVSLGPLPSS---SLQDVGGWGSIPSVGDLGLQEIKSDKGMH------------------FMGGENAALGRLQEYFWEKDLLKVYKETRNGMVGPDYSTKFSPWLASGSLSPRYVYAEVKRYEKERVANDSTYWVLFELIWRDYFRFCSMKYGNSIFHLGGPRKVMAK--WKQDQSLFESWKQGHTGYPLVDANMKELSATGFMSNRGRQVVCSFLVRDMGLDWRMGAEWFESCLLDYDPCSNYGNWNYGAGVGNDPREDRYFSIPKQARTYDPEGEYVSYWLPELRSLPIEERNFPGR 535          
BLAST of NO04G00910 vs. NCBI_GenBank
Match: XP_024358645.1 (cryptochrome DASH, chloroplastic/mitochondrial-like isoform X2 [Physcomitrella patens])

HSP 1 Score: 498.8 bits (1283), Expect = 2.500e-137
Identity = 259/510 (50.78%), Postives = 329/510 (64.51%), Query Frame = 0
Query:   92 TKCGLVWYKCSDLRTLDHEPLSLAHAENNNVCHLFCFDPRWFGEAGGPSAPGTLKTGALRARFLLEAVQDLK--IRLQG-NLVVKIGKPEMEVPRLAKALGATTVYAHREVTSEELTVVKGVQEGLRKVTDG---KSKLREAWGGYLYHINDLPFDDVKQNMPDVFTQFRKAVESKSRIRKYFPVPSALKPPPSALSGAAAEESAVNAMPSPVTLQALGFTTEEDLEPVVGYGRDARVNPAAVLMFKGGETAGLARLREYLWEKDLLKSYKETRNGMLGPDYSSKFSPWLATGSISPRVVFAEITKYERERVENDSTYWLVFELIRRDFFRYSGISFGNDFFKLGGPQKNPKKYPWKRDGALFYAWKEGRTGYPLVDANMRELKATGFMSNRGRQIVASFMTRDMGLDWRLGAYWFEECLLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQGGTYDPDAVYMKHWCPELKDLPADVLINPGRLDAVVRARYGVDEDVYPRPVVPLKFG 596
            T   +VW++ +DLR  D+E L  A   +  V  L+  DPR +G+      P   KTG LRA+F++E+V +L+  +R +G +L+V+ GKPE  VP +AK++GA TVYAH+E  SEE TV  GV+ GL  +  G   + +L   WGG LYH++DLPF      +PDV+TQFRK VE   ++R    +P+ + P P +LS    E   +       T+  LG    E              +P  V+ F+GGETA LARL++Y W KD LK YKETRNGMLG +YS+KFSPWLA G +SPR +  E+ +YE ERV NDSTYW++FELI RD+FR+  I +GN  F LGGP+K   K  W ++  LF AW+EGRTGYPL+DANM+EL ATGFMSNRGRQIV SF+ RD+GLDWR+G  WFE CLLDYDPCSNYGNW Y AGVG+DPREDRYFS+PKQ  TYDP+  Y+ HW P LK  P      PG              D Y RP+VPLKFG
Sbjct:   31 TGIAIVWFR-NDLRISDNEALLKAWQSSQAVVPLYVVDPRLYGQTYHFGFP---KTGELRAQFIMESVANLRDNLRQRGLDLIVRQGKPEDVVPSIAKSIGAHTVYAHKETCSEETTVETGVKRGLANLEGGPKMQIRLDFVWGGTLYHLDDLPFS--PSELPDVYTQFRKGVEYNCKVRPALKMPTQMGPLPESLSEKIGELGDI------PTMAELGLKYREQ-------------SPLGVMHFEGGETAALARLQDYFWNKDQLKIYKETRNGMLGANYSTKFSPWLAHGCLSPRTIHDEVKRYETERVANDSTYWVLFELIWRDYFRFVSIKYGNAIFHLGGPRKVVGK-RWSQNRELFEAWREGRTGYPLIDANMKELAATGFMSNRGRQIVCSFLVRDLGLDWRMGGEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQSATYDPEGEYVAHWLPSLKQSPPKQRNFPG--------------DAYLRPIVPLKFG 500          
The following BLAST results are available for this feature:
BLAST of NO04G00910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28467.13.100e-24469.92cryptochrome chloroplastic mitochondrial-like prot... [more]
CBJ48326.13.400e-14251.46cryptochrome 3 [Ectocarpus siliculosus][more]
CBJ48325.16.500e-14150.58cryptochrome 2 [Ectocarpus siliculosus][more]
XP_021729270.11.800e-13850.39LOW QUALITY PROTEIN: cryptochrome DASH, chloroplas... [more]
XP_021744326.11.800e-13851.36cryptochrome DASH, chloroplastic/mitochondrial-lik... [more]
KNA22388.18.700e-13850.78hypothetical protein SOVF_034370 [Spinacia olerace... [more]
XP_021860812.18.700e-13850.78cryptochrome DASH, chloroplastic/mitochondrial [Sp... [more]
XP_024358644.12.500e-13750.78cryptochrome DASH, chloroplastic/mitochondrial-lik... [more]
PKA50837.12.500e-13752.57Cryptochrome DASH, chloroplastic/mitochondrial [Ap... [more]
XP_024358645.12.500e-13750.78cryptochrome DASH, chloroplastic/mitochondrial-lik... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005013NSK005013Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00910.1NO04G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622582gene_1871Nannochloropsis oceanica (N. oceanica CCMP1779)gene
CRY3gene2118Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00910.1NO04G00910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00910 ID=NO04G00910|Name=NO04G00910|organism=Nannochloropsis oceanica|type=gene|length=2120bp
AACAACTGCAGACCCGCTTTGTGTATGTTTGGGCTGCCCTTTCGCTCGGC
AGCTCTCGCAACCGTGGTTTGCTTTATCCTCCACAGCGCCACCGCATCAG
CAGCCGCTCGGCCAAGTACAAGGCTCTCTCCTGCCTTCGGGCGTGCGCTG
TTCTCATTATCCAGAGTCTCATCTGTCCCAGCCCAGCGACGTCAGCAACG
AGGGCATTCCCTAAGCAAGCACTACACGCACAGCCCCATCAGCAGCGCCA
CAATGTCTGCTGCTGCCTCCTCCACCGCAGCATCAGCCCCAAGCGCGACA
AAGTGCGGCCTCGTTTGGTACAAATGTTCGGACCTTCGTACACTCGATCA
CGAGCCTCTGTCCTTGGCCCACGCTGAAAACAACAATGTCTGTCATCTTT
TCTGCTTCGACCCCCGCTGGTTCGGGGAGGCCGGTGGGCCGTCCGCACCC
GGCACGCTCAAGACAGGCGCTTTGCGCGCACGCTTTCTGCTCGAAGCTGT
ACAGGATTTGAAAATCCGATTGCAAGGCAATCTTGTCGTTAAAATAGGTA
AGCCCGAGATGGAAGTCCCCCGGTTGGCCAAGGCTTTGGGGGCGACGACA
GTGTACGCCCACCGCGAGGTAACGTCCGAGGAGCTCACCGTGGTAAAAGG
AGTGCAGGAGGGCCTGCGAAAGGTGACAGACGGGAAAAGCAAGCTTCGGG
AAGCCTGGGGTGGTTACCTCTATCATATCAATGATTTGCCGTTCGATGAC
GTGAAGCAAAACATGCCGGATGTCTTTACTCAGTTCCGCAAGGCTGTCGA
ATCCAAGTCCCGCATCCGCAAATATTTCCCCGTCCCGTCTGCGCTCAAGC
CTCCGCCCTCCGCCTTATCAGGTGCTGCAGCCGAAGAGTCGGCCGTGAAT
GCCATGCCTTCTCCCGTGACATTGCAGGCGTTGGGCTTCACGACCGAGGA
GGACTTAGAGCCGGTGGTGGGGTACGGGAGGGATGCGAGGGTGAACCCCG
CGGCTGTCTTGATGTTCAAGGGGGGGGAGACGGCGGGCTTGGCCAGATTG
AGGGAATACTTGTGGGAGAAGGACCTGgtaagtataagatgatgaagacg
aaggatttgtcgtatgtcctagtttgagtattcgacggggagagattttc
cttcacgaattgtcttcccttccctccttccctccccttcctcgttctct
agCTCAAAAGTTACAAGGAGACCCGCAACGGCATGCTTGGTCCCGACTAC
AGCAGCAAATTCAGCCCCTGGCTTGCCACTGGCAGCATCTCTCCTCGTGT
GGTCTTTGCCGAGATCACCAAATATGAGAGAGAGAGGGTGGAGAACGACA
GCACCTACTGGTTAGTGTTCGAGCTGATCCGGCGTGACTTCTTTCGGTAT
TCAGGCATCTCGTTCGGTAATGATTTCTTTAAATTGGGCGGGCCGCAGAA
GAACCCGAAGAAGTACCCATGGAAGAGGGATGGGGCATTGTTCTACGCCT
GGAAAGAGGGTAGGACGGGGTATCCCCTGGTGGACGCTAACATGAGAGAG
TTGAAAGCAACAGGGTTCATGTCTAACCGCGGACGGCAGATAGTGGCATC
TTTTATGACGAGGGACATGGGCTTGGATTGGCGTTTGGGCGCGTATTGGT
TTGAGGAGTGTTTGTTGGATTATGACCCGTGTTCGAATTATGGGAATTGG
TGCTATGCCGCGGGCGTGGGGAGCGACCCCAGGGAGGACCGGTACTTTTC
CCTGCCGAAACAGGGCGGGACTTATGATCCTGACGCGGTGTATATGAAGC
ATTGGTGCCCTGAATTGAAGGATCTGCCGGCGGATGTGCTGATTAACCCT
GGGAGACTTGATGCGGTTGTACGGGCGAGGTATGGCGTGGATGAGGACGT
TTACCCGAGACCTGTCGTGCCGCTGAAGTTTGGGGGAGGAGGAGGCGTGA
AGGGAGGGGGGGGAAGGGAGGAAGCGGACAAGGCAGGGGAGGAGGAGGCG
GAGGAGGAGGTAAAGGACGGGCGCCGTTCAAGGGACCCCGGCGACCGGCC
AATCGGTTGCAGAACGATTACTTTTAATTTTACGAGGCTGATCCGGGCTG
AGGGAGGGAAGTGGAAGTAG
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protein sequence of NO04G00910.1

>NO04G00910.1-protein ID=NO04G00910.1-protein|Name=NO04G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=657bp
MFGLPFRSAALATVVCFILHSATASAAARPSTRLSPAFGRALFSLSRVSS
VPAQRRQQRGHSLSKHYTHSPISSATMSAAASSTAASAPSATKCGLVWYK
CSDLRTLDHEPLSLAHAENNNVCHLFCFDPRWFGEAGGPSAPGTLKTGAL
RARFLLEAVQDLKIRLQGNLVVKIGKPEMEVPRLAKALGATTVYAHREVT
SEELTVVKGVQEGLRKVTDGKSKLREAWGGYLYHINDLPFDDVKQNMPDV
FTQFRKAVESKSRIRKYFPVPSALKPPPSALSGAAAEESAVNAMPSPVTL
QALGFTTEEDLEPVVGYGRDARVNPAAVLMFKGGETAGLARLREYLWEKD
LLKSYKETRNGMLGPDYSSKFSPWLATGSISPRVVFAEITKYERERVEND
STYWLVFELIRRDFFRYSGISFGNDFFKLGGPQKNPKKYPWKRDGALFYA
WKEGRTGYPLVDANMRELKATGFMSNRGRQIVASFMTRDMGLDWRLGAYW
FEECLLDYDPCSNYGNWCYAAGVGSDPREDRYFSLPKQGGTYDPDAVYMK
HWCPELKDLPADVLINPGRLDAVVRARYGVDEDVYPRPVVPLKFGGGGGV
KGGGGREEADKAGEEEAEEEVKDGRRSRDPGDRPIGCRTITFNFTRLIRA
EGGKWK*
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Synonyms
Publications