jgi.p|Nanoce1779_2|622582, mRNA_1871 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|622582
Unique Name	mRNA_1871
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1701
Alignment location	scaffold_4:228551..230376 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	622668
Track	FilteredModels2
ProteinId	622582

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:228551..230376 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622582	gene_1871	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622582	mRNA_1871-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1871	CDS_1871	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:228551..230376+
coding sequence from alignment at scaffold_4:228551..230376+

mRNA sequence

>mRNA_1871 ID=mRNA_1871|Name=jgi.p|Nanoce1779_2|622582|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp
ATGTCTGCTGCTGCCTCCTCCACCGCAGCATCAGCCCCAAGCGCGACAAA
GTGCGGCCTCGTTTGGTACAAATGTTCGGACCTTCGTACACTCGATCACG
AGCCTCTGTCCTTGGCCCACGCTGAAAACAACAATGTCTGTCATCTTTTC
TGCTTCGACCCCCGCTGGTTCGGGGAGGCCGGTGGGCCGTCCGCACCCGG
CACGCTCAAGACAGGCGCTTTGCGCGCACGCTTTCTGCTCGAAGCTGTAC
AGGATTTGAAAATCCGATTGCAAGGCAATCTTGTCGTTAAAATAGGTAAG
CCCGAGATGGAAGTCCCCCGGTTGGCCAAGGCTTTGGGGGCGACGACAGT
GTACGCCCACCGCGAGGTAACGTCCGAGGAGCTCACCGTGGTAAAAGGAG
TGCAGGAGGGCCTGCGAAAGGTGACAGACGGGAAAAGCAAGCTTCGGGAA
GCCTGGGGTGGTTACCTCTATCATATCAATGATTTGCCGTTCGATGACGT
GAAGCAAAACATGCCGGATGTCTTTACTCAGTTCCGCAAGGCTGTCGAAT
CCAAGTCCCGCATCCGCAAATATTTCCCCGTCCCGTCTGCGCTCAAGCCT
CCGCCCTCCGCCTTATCAGGTGCTGCAGCGGAAGAGTCGGCCGTGAATGC
CATGCCTTCTCCCGTGACATTGCAGGCGTTGGGCTTCACGACCGAGGAGG
ACTTAGAGCCGGTGGTGGGGTACGGGAGGGATGCGAGGGTGAACCCCGCG
GCTGTCTTGATGTTCAAGGGGGGGGAGACGGCGGGCTTGGCCAGATTGAG
GGAATACTTGTGGGAGAAGGACCTGCTCAAAAGTTACAAGGAGACCCGCA
ACGGCATGCTTGGTCCCGACTACAGCAGCAAATTCAGCCCCTGGCTTGCC
ACTGGCAGCATCTCTCCTCGTGTGGTCTTTGCCGAGATCACCAAATATGA
GAGAGAGAGGGTGGAGAACGACAGCACCTACTGGTTAGTGTTCGAGCTGA
TCTGGCGTGACTTCTTTCGGTATTCAGGCATCTCGTTCGGTAATGATTTC
TTTAAATTGGGCGGGCCGCAGAAGAACCCGAAGAAGTACCCATGGAAGAG
GGATGGGGCATTGTTCTACGCCTGGAAAGAGGGTAGGACGGGGTATCCCC
TGGTGGACGCTAACATGAGAGAGTTGAAAGCAACAGGGTTCATGTCTAAC
CGCGGACGGCAGATAGTGGCATCTTTTATGACGAGGGACATGGGCTTGGA
TTGGCGTTTGGGCGCGTATTGGTTTGAGGAGTGTTTGTTGGATTATGACC
CGTGTTCGAATTATGGGAATTGGTGCTATGCCGCGGGCGTGGGGAGCGAC
CCCAGGGAGGACCGGTACTTTTCCCTGCCGAAACAGGGCGGGACTTATGA
TCCTGACGCGGTGTATATGAAGCATTGGTGCCCTGAATTGAAGGATCTGC
CGGCGGATGTGCTGATTAACCCTGGGAGACTTGATGCGGTTGTACGGGCG
AGGTATGGCGTGGATGAGGACGTTTACCCGAGACCTGTCGTGCCGCTGAA
GTTTGGGGGAGGAGGAGGCGTGAAGGGAGGGGGGGGGAAGGGAGGAAGCG
GACAAGGCAGGGGAGGAGGAGGCGGAGGAGGAGGTAAGGGACGGGCGCCG
TTCAAGGGACCCCGGCGACCGGCCAATCGGTTGCAGAACGATTACTTTTA
A

protein sequence of jgi.p|Nanoce1779_2|622582

>mRNA_1871-protein ID=mRNA_1871-protein|Name=jgi.p|Nanoce1779_2|622582|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp
MSAAASSTAASAPSATKCGLVWYKCSDLRTLDHEPLSLAHAENNNVCHLF
CFDPRWFGEAGGPSAPGTLKTGALRARFLLEAVQDLKIRLQGNLVVKIGK
PEMEVPRLAKALGATTVYAHREVTSEELTVVKGVQEGLRKVTDGKSKLRE
AWGGYLYHINDLPFDDVKQNMPDVFTQFRKAVESKSRIRKYFPVPSALKP
PPSALSGAAAEESAVNAMPSPVTLQALGFTTEEDLEPVVGYGRDARVNPA
AVLMFKGGETAGLARLREYLWEKDLLKSYKETRNGMLGPDYSSKFSPWLA
TGSISPRVVFAEITKYERERVENDSTYWLVFELIWRDFFRYSGISFGNDF
FKLGGPQKNPKKYPWKRDGALFYAWKEGRTGYPLVDANMRELKATGFMSN
RGRQIVASFMTRDMGLDWRLGAYWFEECLLDYDPCSNYGNWCYAAGVGSD
PREDRYFSLPKQGGTYDPDAVYMKHWCPELKDLPADVLINPGRLDAVVRA
RYGVDEDVYPRPVVPLKFGGGGGVKGGGGKGGSGQGRGGGGGGGGKGRAP
FKGPRRPANRLQNDYF*

mRNA from alignment at scaffold_4:228551..230376+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1871 ID=mRNA_1871|Name=jgi.p|Nanoce1779_2|622582|organism=Nannochloropsis oceanica|type=mRNA|length=1826bp|location=Sequence derived from alignment at scaffold_4:228551..230376+ (Nannochloropsis oceanica)
ATGTCTGCTGCTGCCTCCTCCACCGCAGCATCAGCCCCAAGCGCGACAAA
GTGCGGCCTCGTTTGGTACAAATGTTCGGACCTTCGTACACTCGATCACG
AGCCTCTGTCCTTGGCCCACGCTGAAAACAACAATGTCTGTCATCTTTTC
TGCTTCGACCCCCGCTGGTTCGGGGAGGCCGGTGGGCCGTCCGCACCCGG
CACGCTCAAGACAGGCGCTTTGCGCGCACGCTTTCTGCTCGAAGCTGTAC
AGGATTTGAAAATCCGATTGCAAGGCAATCTTGTCGTTAAAATAGGTAAG
CCCGAGATGGAAGTCCCCCGGTTGGCCAAGGCTTTGGGGGCGACGACAGT
GTACGCCCACCGCGAGGTAACGTCCGAGGAGCTCACCGTGGTAAAAGGAG
TGCAGGAGGGCCTGCGAAAGGTGACAGACGGGAAAAGCAAGCTTCGGGAA
GCCTGGGGTGGTTACCTCTATCATATCAATGATTTGCCGTTCGATGACGT
GAAGCAAAACATGCCGGATGTCTTTACTCAGTTCCGCAAGGCTGTCGAAT
CCAAGTCCCGCATCCGCAAATATTTCCCCGTCCCGTCTGCGCTCAAGCCT
CCGCCCTCCGCCTTATCAGGTGCTGCAGCGGAAGAGTCGGCCGTGAATGC
CATGCCTTCTCCCGTGACATTGCAGGCGTTGGGCTTCACGACCGAGGAGG
ACTTAGAGCCGGTGGTGGGGTACGGGAGGGATGCGAGGGTGAACCCCGCG
GCTGTCTTGATGTTCAAGGGGGGGGAGACGGCGGGCTTGGCCAGATTGAG
GGAATACTTGTGGGAGAAGGACCTGGTAAGTATAAGATGATGAAGACGAA
GGATTTGTCGTATGTCCTAGTTTGAGTATTCGACGGGGAGAGATTTTCCT
TCACGAATTGTCTTCCCTTCCCTCCTTCCCTCCCCTTCCTCGTTCTCTAG
CTCAAAAGTTACAAGGAGACCCGCAACGGCATGCTTGGTCCCGACTACAG
CAGCAAATTCAGCCCCTGGCTTGCCACTGGCAGCATCTCTCCTCGTGTGG
TCTTTGCCGAGATCACCAAATATGAGAGAGAGAGGGTGGAGAACGACAGC
ACCTACTGGTTAGTGTTCGAGCTGATCTGGCGTGACTTCTTTCGGTATTC
AGGCATCTCGTTCGGTAATGATTTCTTTAAATTGGGCGGGCCGCAGAAGA
ACCCGAAGAAGTACCCATGGAAGAGGGATGGGGCATTGTTCTACGCCTGG
AAAGAGGGTAGGACGGGGTATCCCCTGGTGGACGCTAACATGAGAGAGTT
GAAAGCAACAGGGTTCATGTCTAACCGCGGACGGCAGATAGTGGCATCTT
TTATGACGAGGGACATGGGCTTGGATTGGCGTTTGGGCGCGTATTGGTTT
GAGGAGTGTTTGTTGGATTATGACCCGTGTTCGAATTATGGGAATTGGTG
CTATGCCGCGGGCGTGGGGAGCGACCCCAGGGAGGACCGGTACTTTTCCC
TGCCGAAACAGGGCGGGACTTATGATCCTGACGCGGTGTATATGAAGCAT
TGGTGCCCTGAATTGAAGGATCTGCCGGCGGATGTGCTGATTAACCCTGG
GAGACTTGATGCGGTTGTACGGGCGAGGTATGGCGTGGATGAGGACGTTT
ACCCGAGACCTGTCGTGCCGCTGAAGTTTGGGGGAGGAGGAGGCGTGAAG
GGAGGGGGGGGGAAGGGAGGAAGCGGACAAGGCAGGGGAGGAGGAGGCGG
AGGAGGAGGTAAGGGACGGGCGCCGTTCAAGGGACCCCGGCGACCGGCCA
ATCGGTTGCAGAACGATTACTTTTAA

Coding sequence (CDS) from alignment at scaffold_4:228551..230376+

>mRNA_1871 ID=mRNA_1871|Name=jgi.p|Nanoce1779_2|622582|organism=Nannochloropsis oceanica|type=CDS|length=3402bp|location=Sequence derived from alignment at scaffold_4:228551..230376+ (Nannochloropsis oceanica)
ATGTCTGCTGCTGCCTCCTCCACCGCAGCATCAGCCCCAAGCGCGACAAA
GTGCGGCCTCGTTTGGTACAAATGTTCGGACCTTCGTACACTCGATCACG
AGCCTCTGTCCTTGGCCCACGCTGAAAACAACAATGTCTGTCATCTTTTC
TGCTTCGACCCCCGCTGGTTCGGGGAGGCCGGTGGGCCGTCCGCACCCGG
CACGCTCAAGACAGGCGCTTTGCGCGCACGCTTTCTGCTCGAAGCTGTAC
AGGATTTGAAAATCCGATTGCAAGGCAATCTTGTCGTTAAAATAGGTAAG
CCCGAGATGGAAGTCCCCCGGTTGGCCAAGGCTTTGGGGGCGACGACAGT
GTACGCCCACCGCGAGGTAACGTCCGAGGAGCTCACCGTGGTAAAAGGAG
TGCAGGAGGGCCTGCGAAAGGTGACAGACGGGAAAAGCAAGCTTCGGGAA
GCCTGGGGTGGTTACCTCTATCATATCAATGATTTGCCGTTCGATGACGT
GAAGCAAAACATGCCGGATGTCTTTACTCAGTTCCGCAAGGCTGTCGAAT
CCAAGTCCCGCATCCGCAAATATTTCCCCGTCCCGTCTGCGCTCAAGCCT
CCGCCCTCCGCCTTATCAGGTGCTGCAGCGGAAGAGTCGGCCGTGAATGC
CATGCCTTCTCCCGTGACATTGCAGGCGTTGGGCTTCACGACCGAGGAGG
ACTTAGAGCCGGTGGTGGGGTACGGGAGGGATGCGAGGGTGAACCCCGCG
GCTGTCTTGATGTTCAAGGGGGGGGAGACGGCGGGCTTGGCCAGATTGAG
GGAATACTTGTGGGAGAAGGACCTGCTCAAAAGTTACAAGGAGACCCGCA
ACGGCATGCTTGGTCCCGACTACAGCAGCAAATTCAGCCCCTGGCTTGCC
ACTGGCAGCATCTCTCCTCGTGTGGTCTTTGCCGAGATCACCAAATATGA
GAGAGAGAGGGTGGAGAACGACAGCACCTACTGGTTAGTGTTCGAGCTGA
TCTGGCGTGACTTCTTTCGGTATTCAGGCATCTCGTTCGGTAATGATTTC
TTTAAATTGGGCGGGCCGCAGAAGAACCCGAAGAAGTACCCATGGAAGAG
GGATGGGGCATTGTTCTACGCCTGGAAAGAGGGTAGGACGGGGTATCCCC
TGGTGGACGCTAACATGAGAGAGTTGAAAGCAACAGGGTTCATGTCTAAC
CGCGGACGGCAGATAGTGGCATCTTTTATGACGAGGGACATGGGCTTGGA
TTGGCGTTTGGGCGCGTATTGGTTTGAGGAGTGTTTGTTGGATTATGACC
CGTGTTCGAATTATGGGAATTGGTGCTATGCCGCGGGCGTGGGGAGCGAC
CCCAGGGAGGACCGGTACTTTTCCCTGCCGAAACAGGGCGGGACTTATGA
TCCTGACGCGGTGTATATGAAGCATTGGTGCCCTGAATTGAAGGATCTGC
CGGCGGATGTGCTGATTAACCCTGGGAGACTTGATGCGGTTGTACGGGCG
AGGTATGGCGTGGATGAGGACGTTTACCCGAGACCTGTCGTGCCGCTGAA
GTTTGGGGGAGGAGGAGGCGTGAAGGGAGGGGGGGGGAAGGGAGGAAGCG
GACAAGGCAGGGGAGGAGGAGGCGGAGGAGGAGGTAAGGGACGGGCGCCG
TTCAAGGGACCCCGGCGACCGGCCAATCGGTTGCAGAACGATTACTTTTA
AATGTCTGCTGCTGCCTCCTCCACCGCAGCATCAGCCCCAAGCGCGACAA
AGTGCGGCCTCGTTTGGTACAAATGTTCGGACCTTCGTACACTCGATCAC
GAGCCTCTGTCCTTGGCCCACGCTGAAAACAACAATGTCTGTCATCTTTT
CTGCTTCGACCCCCGCTGGTTCGGGGAGGCCGGTGGGCCGTCCGCACCCG
GCACGCTCAAGACAGGCGCTTTGCGCGCACGCTTTCTGCTCGAAGCTGTA
CAGGATTTGAAAATCCGATTGCAAGGCAATCTTGTCGTTAAAATAGGTAA
GCCCGAGATGGAAGTCCCCCGGTTGGCCAAGGCTTTGGGGGCGACGACAG
TGTACGCCCACCGCGAGGTAACGTCCGAGGAGCTCACCGTGGTAAAAGGA
GTGCAGGAGGGCCTGCGAAAGGTGACAGACGGGAAAAGCAAGCTTCGGGA
AGCCTGGGGTGGTTACCTCTATCATATCAATGATTTGCCGTTCGATGACG
TGAAGCAAAACATGCCGGATGTCTTTACTCAGTTCCGCAAGGCTGTCGAA
TCCAAGTCCCGCATCCGCAAATATTTCCCCGTCCCGTCTGCGCTCAAGCC
TCCGCCCTCCGCCTTATCAGGTGCTGCAGCGGAAGAGTCGGCCGTGAATG
CCATGCCTTCTCCCGTGACATTGCAGGCGTTGGGCTTCACGACCGAGGAG
GACTTAGAGCCGGTGGTGGGGTACGGGAGGGATGCGAGGGTGAACCCCGC
GGCTGTCTTGATGTTCAAGGGGGGGGAGACGGCGGGCTTGGCCAGATTGA
GGGAATACTTGTGGGAGAAGGACCTGCTCAAAAGTTACAAGGAGACCCGC
AACGGCATGCTTGGTCCCGACTACAGCAGCAAATTCAGCCCCTGGCTTGC
CACTGGCAGCATCTCTCCTCGTGTGGTCTTTGCCGAGATCACCAAATATG
AGAGAGAGAGGGTGGAGAACGACAGCACCTACTGGTTAGTGTTCGAGCTG
ATCTGGCGTGACTTCTTTCGGTATTCAGGCATCTCGTTCGGTAATGATTT
CTTTAAATTGGGCGGGCCGCAGAAGAACCCGAAGAAGTACCCATGGAAGA
GGGATGGGGCATTGTTCTACGCCTGGAAAGAGGGTAGGACGGGGTATCCC
CTGGTGGACGCTAACATGAGAGAGTTGAAAGCAACAGGGTTCATGTCTAA
CCGCGGACGGCAGATAGTGGCATCTTTTATGACGAGGGACATGGGCTTGG
ATTGGCGTTTGGGCGCGTATTGGTTTGAGGAGTGTTTGTTGGATTATGAC
CCGTGTTCGAATTATGGGAATTGGTGCTATGCCGCGGGCGTGGGGAGCGA
CCCCAGGGAGGACCGGTACTTTTCCCTGCCGAAACAGGGCGGGACTTATG
ATCCTGACGCGGTGTATATGAAGCATTGGTGCCCTGAATTGAAGGATCTG
CCGGCGGATGTGCTGATTAACCCTGGGAGACTTGATGCGGTTGTACGGGC
GAGGTATGGCGTGGATGAGGACGTTTACCCGAGACCTGTCGTGCCGCTGA
AGTTTGGGGGAGGAGGAGGCGTGAAGGGAGGGGGGGGGAAGGGAGGAAGC
GGACAAGGCAGGGGAGGAGGAGGCGGAGGAGGAGGTAAGGGACGGGCGCC
GTTCAAGGGACCCCGGCGACCGGCCAATCGGTTGCAGAACGATTACTTTT
AA

Synonyms

Publications