jgi.p|Nanoce1779_2|572811, gene_1590 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572811
Unique Namegene_1590
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_1:1023435..1024384 +

Link to JBrowse

Properties
Property NameValue
TranscriptId572897
ProteinId572811
Product nameUbiquitin-conjugating enzyme/RWD-like protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1023435..1024384 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0019787ubiquitin-like protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0051438regulation of ubiquitin-protein transferase activity
GO:0051443positive regulation of ubiquitin-protein transferase activity
GO:0051444negative regulation of ubiquitin-protein transferase activity
GO:0043687post-translational protein modification
GO:0051246regulation of protein metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL000ncniL000Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G03940NO03G03940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572811mRNA_1590-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572811mRNA_1590Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|572811

>mRNA_1590-protein ID=mRNA_1590-protein|Name=jgi.p|Nanoce1779_2|572811|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MAMGPLKRLRKELQALERAPDADIDLQPQQNDIRRWQAVIRGPGETPFEG
GTFQLLIEVGPEYPLRPPLIHFITRVFHPNIHFETGEICLDILKKEWSPA
WSLQAACRAVMALLAAPDADSPLNCDAGNMVRAGDMRAFNSLAKMYTAEY
ASVDLSLSS*
back to top
Synonyms
Publications