jgi.p|Nanoce1779_2|572811, mRNA_1590 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572811
Unique NamemRNA_1590
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length877
Alignment locationscaffold_1:1023435..1024384 +

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Properties
Property NameValue
TranscriptId572897
TrackFilteredModels2
ProteinId572811
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1023435..1024384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572811gene_1590Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572811mRNA_1590-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1590CDS_1590Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1590 ID=mRNA_1590|Name=jgi.p|Nanoce1779_2|572811|organism=Nannochloropsis oceanica|type=mRNA|length=877bp
CAGTACAGGCACATTTACGCCGCAGCAATACGAAGCGCGGTTATGGCCAT
GGGACCGCTCAAACGACTGCGCAAGGAGCTGCAAGCCTTGGAACGAGCCC
CGGACGCCGACATCGACCTCCAGCCGCAGCAAAACGACATACGGAGGTGG
CAGGCCGTAATTCGTGGCCCAGGCGAGACCCCCTTTGAGGGAGGGACATT
TCAGCTCCTCATCGAGGTAGGACCAGAATACCCCCTCCGCCCTCCGCTCA
TCCATTTCATCACACGGGTCTTCCACCCCAACATTCATTTTGAGACGGGT
GAGATTTGTTTGGACATTTTGAAGAAGGAGTGGTCGCCCGCATGGAGTCT
GCAGGCGGCCTGTCGGGCCGTTATGGCCTTGTTGGCCGCGCCGGATGCGG
ACAGCCCTTTGAACTGTGACGCGGGTAACATGGTCAGGGCGGGGGACATG
CGGGCGTTTAACTCGTTGGCAAAGATGTACACTGCGGAGTATGCCTCAGT
GGATTTGTCGTTATCGTCGTAGAAGTTGGGGAGGGGAAGAGCGGATTAGT
TGTGATTCATTCATAGGTAATGTATGTGTAGATATGTATACGTGTTAAAT
TGGTATGGGGTGCGAGTACGAAATTCGTGGTCCATCATCGAAGGTGGCGG
TTAGAAATGATGAGGGCGTATTTGACTGCCAGGCAATCGTTGATTCGCTG
AGGAACTCGGTCGCCGGTACATGCGCGGAGGGAGGGCCGTGATAACATGA
GAGATTCCACTACGACGCTTAAGGGTCATCAAAACAGATGAAGTAAATTC
AGAAAATGTGTGGTAAACATTCTGTTTGTGTCACGTCATGTCATGAAAAG
AAATGATGGCAGTGCTCATGCGTAATG
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protein sequence of jgi.p|Nanoce1779_2|572811

>mRNA_1590-protein ID=mRNA_1590-protein|Name=jgi.p|Nanoce1779_2|572811|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MAMGPLKRLRKELQALERAPDADIDLQPQQNDIRRWQAVIRGPGETPFEG
GTFQLLIEVGPEYPLRPPLIHFITRVFHPNIHFETGEICLDILKKEWSPA
WSLQAACRAVMALLAAPDADSPLNCDAGNMVRAGDMRAFNSLAKMYTAEY
ASVDLSLSS*
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mRNA from alignment at scaffold_1:1023435..1024384+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1590 ID=mRNA_1590|Name=jgi.p|Nanoce1779_2|572811|organism=Nannochloropsis oceanica|type=mRNA|length=950bp|location=Sequence derived from alignment at scaffold_1:1023435..1024384+ (Nannochloropsis oceanica)
CAGTACAGGCACATTTACGCCGCAGCAATACGAAGCGCGGTTATGGCCAT
GGGACCGCTCAAACGACTGCGCAAGGTAAAGTTTTCCACCCTTCACAAAG
CAAAGCAGCCCTTCATCTCTCTGCACCGATCACTCTTCCACAACACAGGA
GCTGCAAGCCTTGGAACGAGCCCCGGACGCCGACATCGACCTCCAGCCGC
AGCAAAACGACATACGGAGGTGGCAGGCCGTAATTCGTGGCCCAGGCGAG
ACCCCCTTTGAGGGAGGGACATTTCAGCTCCTCATCGAGGTAGGACCAGA
ATACCCCCTCCGCCCTCCGCTCATCCATTTCATCACACGGGTCTTCCACC
CCAACATTCATTTTGAGACGGGTGAGATTTGTTTGGACATTTTGAAGAAG
GAGTGGTCGCCCGCATGGAGTCTGCAGGCGGCCTGTCGGGCCGTTATGGC
CTTGTTGGCCGCGCCGGATGCGGACAGCCCTTTGAACTGTGACGCGGGTA
ACATGGTCAGGGCGGGGGACATGCGGGCGTTTAACTCGTTGGCAAAGATG
TACACTGCGGAGTATGCCTCAGTGGATTTGTCGTTATCGTCGTAGAAGTT
GGGGAGGGGAAGAGCGGATTAGTTGTGATTCATTCATAGGTAATGTATGT
GTAGATATGTATACGTGTTAAATTGGTATGGGGTGCGAGTACGAAATTCG
TGGTCCATCATCGAAGGTGGCGGTTAGAAATGATGAGGGCGTATTTGACT
GCCAGGCAATCGTTGATTCGCTGAGGAACTCGGTCGCCGGTACATGCGCG
GAGGGAGGGCCGTGATAACATGAGAGATTCCACTACGACGCTTAAGGGTC
ATCAAAACAGATGAAGTAAATTCAGAAAATGTGTGGTAAACATTCTGTTT
GTGTCACGTCATGTCATGAAAAGAAATGATGGCAGTGCTCATGCGTAATG
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Coding sequence (CDS) from alignment at scaffold_1:1023435..1024384+

>mRNA_1590 ID=mRNA_1590|Name=jgi.p|Nanoce1779_2|572811|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_1:1023435..1024384+ (Nannochloropsis oceanica)
ATGGCCATGGGACCGCTCAAACGACTGCGCAAGGAGCTGCAAGCCTTGGA
ACGAGCCCCGGACGCCGACATCGACCTCCAGCCGCAGCAAAACGACATAC
GGAGGTGGCAGGCCGTAATTCGTGGCCCAGGCGAGACCCCCTTTGAGGGA
GGGACATTTCAGCTCCTCATCGAGGTAGGACCAGAATACCCCCTCCGCCC
TCCGCTCATCCATTTCATCACACGGGTCTTCCACCCCAACATTCATTTTG
AGACGGGTGAGATTTGTTTGGACATTTTGAAGAAGGAGTGGTCGCCCGCA
TGGAGTCTGCAGGCGGCCTGTCGGGCCGTTATGGCCTTGTTGGCCGCGCC
GGATGCGGACAGCCCTTTGAACTGTGACGCGGGTAACATGGTCAGGGCGG
GGGACATGCGGGCGTTTAACTCGTTGGCAAAGATGTACACTGCGGAGTAT
GCCTCAGTGGATTTGTCGTTATCGTCGTAGATGGCCATGGGACCGCTCAA
ACGACTGCGCAAGGAGCTGCAAGCCTTGGAACGAGCCCCGGACGCCGACA
TCGACCTCCAGCCGCAGCAAAACGACATACGGAGGTGGCAGGCCGTAATT
CGTGGCCCAGGCGAGACCCCCTTTGAGGGAGGGACATTTCAGCTCCTCAT
CGAGGTAGGACCAGAATACCCCCTCCGCCCTCCGCTCATCCATTTCATCA
CACGGGTCTTCCACCCCAACATTCATTTTGAGACGGGTGAGATTTGTTTG
GACATTTTGAAGAAGGAGTGGTCGCCCGCATGGAGTCTGCAGGCGGCCTG
TCGGGCCGTTATGGCCTTGTTGGCCGCGCCGGATGCGGACAGCCCTTTGA
ACTGTGACGCGGGTAACATGGTCAGGGCGGGGGACATGCGGGCGTTTAAC
TCGTTGGCAAAGATGTACACTGCGGAGTATGCCTCAGTGGATTTGTCGTT
ATCGTCGTAG
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Synonyms
Publications