NO03G03940, NO03G03940 (gene) Nannochloropsis oceanica

Overview
NameNO03G03940
Unique NameNO03G03940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length553
Alignment locationchr3:1153028..1153580 +

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Properties
Property NameValue
DescriptionUbiquitin-conjugating enzyme
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1153028..1153580 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
Homology
[Close]
BLAST of NO03G03940 vs. NCBI_GenBank
Match: EWM29846.1 (ubiquitin-conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 192.6 bits (488), Expect = 7.900e-46
Identity = 94/150 (62.67%), Postives = 113/150 (75.33%), Query Frame = 0 
Query:    3 MGPLKRLRKELQALERAPDADIDLQPQQNDIRRWQAVIRGPGETPFEGGTFQLLI--------------------------ETGEICLDILKKEWSPAWSLQAACRAVMALLAAPDADSPLNCDAGNMVRAGDMRAFNSLAKMYTAEYAS 127
            MG LKRLRKELQA+E+  D D++L PQ+++IR W A+I+GPGETPFEGGTF+L I                          ETGEICLDILKKEWSPAWSLQ ACRAV+ALLAAPDA+SPLNCDAGNM+RAGD+RA+N++A++YT EY S
Sbjct:    1 MGSLKRLRKELQAIEKTSDTDMELWPQEDNIRLWHAIIQGPGETPFEGGTFELRIEVGTDYPIRPPVIRFVTHIFHPNIHFETGEICLDILKKEWSPAWSLQTACRAVVALLAAPDAESPLNCDAGNMLRAGDVRAYNAMARLYTVEYGS 150
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BLAST of NO03G03940 vs. NCBI_GenBank
Match: CBJ32389.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 161.8 bits (408), Expect = 1.500e-36
Identity = 83/155 (53.55%), Postives = 104/155 (67.10%), Query Frame = 0 
Query:    1 MAMGPLKRLRKELQALERA-PDADIDLQPQQNDIRRWQAVIRGPGETPFEGGTFQLLI--------------------------ETGEICLDILKKEWSPAWSLQAACRAVMALLAAPDADSPLNCDAGNMVRAGDMRAFNSLAKMYTAEYASVD 129
            M++   KRLRKE+  L+ + PD DI +   ++DIR+W+A IRGP +TPF GG ++L I                           TGEICL+ILKK+WSPAWSLQ ACRA++ALLA P+ADSPLNCDAGNMVRAGDMRAF S+A++Y  E AS D
Sbjct:    1 MSLTSAKRLRKEMHKLQTSPPDEDIRMSADEDDIRQWRAYIRGPPDTPFAGGIYELKITVGQQYPMVPPCMRFVTKVFHPNVHFNTGEICLNILKKDWSPAWSLQGACRAILALLAHPEADSPLNCDAGNMVRAGDMRAFRSVARLYNEELASKD 155
[Close]
BLAST of NO03G03940 vs. NCBI_GenBank
Match: XP_009520964.1 (hypothetical protein PHYSODRAFT_540360 [Phytophthora sojae] >EGZ25676.1 hypothetical protein PHYSODRAFT_540360 [Phytophthora sojae] >OWZ16841.1 Ubiquitin-conjugating enzyme E2 [Phytophthora megakarya])

HSP 1 Score: 156.0 bits (393), Expect = 8.200e-35
Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 0 
Query:    6 LKRLRKELQALERAPDADIDLQPQQNDIRRWQAVIRGPGETPFEGGTFQLLIET--------------------------GEICLDILKKEWSPAWSLQAACRAVMALLAAPDADSPLNCDAGNMVRAGDMRAFNSLAKMYTAEYASVDL 130
            +KRLRKELQ L++ P+ D+ L P+++ I RW+A IRGP +TPFE   F+L I+T                          G ICLDILK+EWSPAW+L+AAC AV++LL+ P ADSPLNCDAGNM+RAGDM A+N++A+MY  EY  +DL
Sbjct:    5 VKRLRKELQELKKNPEEDMVLYPEEDTIMRWKAFIRGPKDTPFEDRCFELAIQTTPLYPMEPPKMKFITKIFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNTMAEMYKKEYGLLDL 154
[Close]
BLAST of NO03G03940 vs. NCBI_GenBank
Match: XP_024574843.1 (ubiquitin-conjugating enzyme [Plasmopara halstedii] >CEG38474.1 ubiquitin-conjugating enzyme [Plasmopara halstedii])

HSP 1 Score: 156.0 bits (393), Expect = 8.200e-35
Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 0 
Query:    6 LKRLRKELQALERAPDADIDLQPQQNDIRRWQAVIRGPGETPFEGGTFQLLIET--------------------------GEICLDILKKEWSPAWSLQAACRAVMALLAAPDADSPLNCDAGNMVRAGDMRAFNSLAKMYTAEYASVDL 130
            +KRLRKELQ L++ P+ D+ L P+++ I RW+A IRGP +TPFE   F+L I+T                          G ICLDILK+EWSPAW+L+AAC AV++LL+ P ADSPLNCDAGNM+RAGDM A+NS+A+MY  EY  ++L
Sbjct:    5 VKRLRKELQELKKNPEEDMVLYPEEDTIMRWKAFIRGPKDTPFENRCFELAIQTTPLYPMEPPKMKFITKVFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNSMAEMYKQEYGLLEL 154
[Close]
BLAST of NO03G03940 vs. NCBI_GenBank
Match: XP_008912392.1 (hypothetical protein PPTG_16576 [Phytophthora parasitica INRA-310] >ETI36815.1 hypothetical protein F443_17078 [Phytophthora parasitica P1569] >ETL30511.1 hypothetical protein L916_16507 [Phytophthora parasitica] >ETL83759.1 hypothetical protein L917_16332 [Phytophthora parasitica] >ETM36956.1 hypothetical protein L914_16436 [Phytophthora parasitica] >ETN02355.1 hypothetical protein PPTG_16576 [Phytophthora parasitica INRA-310] >ETP34795.1 hypothetical protein F442_16936 [Phytophthora parasitica P10297])

HSP 1 Score: 154.5 bits (389), Expect = 2.400e-34
Identity = 77/150 (51.33%), Postives = 102/150 (68.00%), Query Frame = 0 
Query:    6 LKRLRKELQALERAPDADIDLQPQQNDIRRWQAVIRGPGETPFEGGTFQLLIET--------------------------GEICLDILKKEWSPAWSLQAACRAVMALLAAPDADSPLNCDAGNMVRAGDMRAFNSLAKMYTAEYASVDL 130
            +KRLRKELQ L++ P+ D+ L P+++ I RW+A IRGP +TPFE   F+L I+T                          G ICLDILK+EWSPAW+L+AAC AV++LL+ P ADSPLNCDAGNM+RAGDM A+N++A+MY  EY  ++L
Sbjct:    5 VKRLRKELQELKKNPEEDMVLYPEEDTIMRWKAYIRGPKDTPFEDRCFELAIQTTPLYPMEPPKMKFITKIFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNTMAEMYKKEYGLLEL 154
[Close]
BLAST of NO03G03940 vs. NCBI_GenBank
Match: ETK77079.1 (hypothetical protein L915_16604 [Phytophthora parasitica] >ETO65560.1 hypothetical protein F444_17108 [Phytophthora parasitica P1976] >ETP06668.1 hypothetical protein F441_16938 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 154.5 bits (389), Expect = 2.400e-34
Identity = 77/150 (51.33%), Postives = 102/150 (68.00%), Query Frame = 0 
Query:    6 LKRLRKELQALERAPDADIDLQPQQNDIRRWQAVIRGPGETPFEGGTFQLLIET--------------------------GEICLDILKKEWSPAWSLQAACRAVMALLAAPDADSPLNCDAGNMVRAGDMRAFNSLAKMYTAEYASVDL 130
            +KRLRKELQ L++ P+ D+ L P+++ I RW+A IRGP +TPFE   F+L I+T                          G ICLDILK+EWSPAW+L+AAC AV++LL+ P ADSPLNCDAGNM+RAGDM A+N++A+MY  EY  ++L
Sbjct:   14 VKRLRKELQELKKNPEEDMVLYPEEDTIMRWKAYIRGPKDTPFEDRCFELAIQTTPLYPMEPPKMKFITKIFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNTMAEMYKKEYGLLEL 163
[Close]
BLAST of NO03G03940 vs. NCBI_GenBank
Match: XP_002904925.1 (ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4] >EEY53307.1 ubiquitin-conjugating enzyme E2, putative [Phytophthora infestans T30-4])

HSP 1 Score: 154.5 bits (389), Expect = 2.400e-34
Identity = 77/150 (51.33%), Postives = 102/150 (68.00%), Query Frame = 0 
Query:    6 LKRLRKELQALERAPDADIDLQPQQNDIRRWQAVIRGPGETPFEGGTFQLLIET--------------------------GEICLDILKKEWSPAWSLQAACRAVMALLAAPDADSPLNCDAGNMVRAGDMRAFNSLAKMYTAEYASVDL 130
            +KRLRKELQ L++ P+ D+ L P+++ I RW+A IRGP +TPFE   F+L I+T                          G ICLDILK+EWSPAW+L+AAC AV++LL+ P ADSPLNCDAGNM+RAGDM A+N++A+MY  EY  ++L
Sbjct:    5 VKRLRKELQELKKNPEEDMVLYPEEDTIMRWKAFIRGPKDTPFEDRCFELAIQTTPLYPMEPPKMKFVTKIFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNTMAEMYKKEYGLLEL 154
[Close]
BLAST of NO03G03940 vs. NCBI_GenBank
Match: GAX93013.1 (ubiquitin-conjugating enzyme E2, putative [Pythium insidiosum])

HSP 1 Score: 152.9 bits (385), Expect = 7.000e-34
Identity = 78/150 (52.00%), Postives = 99/150 (66.00%), Query Frame = 0 
Query:    6 LKRLRKELQALERAPDADIDLQPQQNDIRRWQAVIRGPGETPFEGGTFQLLIET--------------------------GEICLDILKKEWSPAWSLQAACRAVMALLAAPDADSPLNCDAGNMVRAGDMRAFNSLAKMYTAEYASVDL 130
            +KRLRKELQ L +  + D+ L P+++ I RW+A IRGP +TPF G  F+L I+T                          G ICLDILK+EWSPAW+L+AAC AV++LL+ P ADSPLNCDAGNM+RAGDM A+NS+A MYT E+   DL
Sbjct:    5 VKRLRKELQELRKNKEEDMVLFPEEDTIMRWRAFIRGPADTPFAGRCFELAIQTTPLYPMEPPKMKFVTKIFHPNVHFKDGSICLDILKREWSPAWTLRAACLAVISLLSDPAADSPLNCDAGNMIRAGDMLAYNSMASMYTREHGLPDL 154
[Close]
BLAST of NO03G03940 vs. NCBI_GenBank
Match: OEU22382.1 (ubiquitin-conjugating enzyme [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 152.5 bits (384), Expect = 9.100e-34
Identity = 79/147 (53.74%), Postives = 98/147 (66.67%), Query Frame = 0 
Query:    7 KRLRKELQALERA--PDADIDLQPQQNDIRRWQAVIRGPGETPFEGGTFQLLIE--------------------------TGEICLDILKKEWSPAWSLQAACRAVMALLAAPDADSPLNCDAGNMVRAGDMRAFNSLAKMYTAEYA 126
            KRLRKELQ LERA   D DI L P  ++I RW A+++GP +TP+  G FQL I+                          TG++CLDILKKEWSPAW +QAACRA++ALL+ PDADSPLNCDAGNM+R GDM A+N+ A+MY+ E A
Sbjct:    9 KRLRKELQNLERAKEQDPDIFLIPDGDNILRWTALLKGPCDTPYAEGVFQLAIDCGSDYPLSPPKIKFLTKIFHPNVHFRTGDVCLDILKKEWSPAWGVQAACRAILALLSDPDADSPLNCDAGNMIRGGDMLAYNTTARMYSVENA 155
[Close]
BLAST of NO03G03940 vs. NCBI_GenBank
Match: CCA22506.1 (ubiquitinconjugating enzyme E2 putative [Albugo laibachii Nc14])

HSP 1 Score: 151.0 bits (380), Expect = 2.700e-33
Identity = 77/145 (53.10%), Postives = 95/145 (65.52%), Query Frame = 0 
Query:    6 LKRLRKELQALERAPDADIDLQPQQNDIRRWQAVIRGPGETPFEGGTFQLLIET--------------------------GEICLDILKKEWSPAWSLQAACRAVMALLAAPDADSPLNCDAGNMVRAGDMRAFNSLAKMYTAEY 125
            +KRLRKELQ L R P++D+ L PQ++ I  W+A I+GP +TPFE   F+L I+T                          G ICLDILKKEWSPAW+L+AAC AV +LL+ P ADSPLNCDAGNM+RA DM A+NS+A MY  EY
Sbjct:    5 VKRLRKELQELRRNPESDMVLYPQEDTIINWKAFIKGPQDTPFEDAVFELAIQTTSLYPMEPPKMKFITKIFHPNVHFKDGSICLDILKKEWSPAWTLRAACLAVTSLLSDPAADSPLNCDAGNMIRADDMMAYNSMAGMYAKEY 149
The following BLAST results are available for this feature:
BLAST of NO03G03940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29846.17.900e-4662.67ubiquitin-conjugating enzyme [Nannochloropsis gadi... [more]
CBJ32389.11.500e-3653.55conserved unknown protein [Ectocarpus siliculosus][more]
XP_009520964.18.200e-3552.00hypothetical protein PHYSODRAFT_540360 [Phytophtho... [more]
XP_024574843.18.200e-3552.00ubiquitin-conjugating enzyme [Plasmopara halstedii... [more]
XP_008912392.12.400e-3451.33hypothetical protein PPTG_16576 [Phytophthora para... [more]
ETK77079.12.400e-3451.33hypothetical protein L915_16604 [Phytophthora para... [more]
XP_002904925.12.400e-3451.33ubiquitin-conjugating enzyme E2, putative [Phytoph... [more]
GAX93013.17.000e-3452.00ubiquitin-conjugating enzyme E2, putative [Pythium... [more]
OEU22382.19.100e-3453.74ubiquitin-conjugating enzyme [Fragilariopsis cylin... [more]
CCA22506.12.700e-3353.10ubiquitinconjugating enzyme E2 putative [Albugo la... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL068nonsL068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR052ngnoR052Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005503NSK005503Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G03940.1NO03G03940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572811gene_1590Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100017g34gene807Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G03940.1NO03G03940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G03940 ID=NO03G03940|Name=NO03G03940|organism=Nannochloropsis oceanica|type=gene|length=553bp
ATGGCCATGGGACCGCTCAAACGACTGCGCAAGgtaaagttttccaccct
tcacaaagcaaagcagcccttcatctctctgcaccgatcactcttccaca
acacagGAGCTGCAAGCCTTGGAACGAGCCCCGGACGCCGACATCGACCT
CCAGCCGCAGCAAAACGACATACGGAGGTGGCAGGCCGTAATTCGTGGCC
CAGGCGAGACCCCCTTTGAGGGAGGGACATTTCAGCTCCTCATCGAGgta
ggaccagaataccccctccgccctccgctcatccatttcatcacacgggt
cttccaccccaacattcattttgagACGGGTGAGATTTGTTTGGACATTT
TGAAGAAGGAGTGGTCGCCCGCATGGAGTCTGCAGGCGGCCTGTCGGGCC
GTTATGGCCTTGTTGGCCGCGCCGGATGCGGACAGCCCTTTGAACTGTGA
CGCGGGTAACATGGTCAGGGCGGGGGACATGCGGGCGTTTAACTCGTTGG
CAAAGATGTACACTGCGGAGTATGCCTCAGTGGATTTGTCGTTATCGTCG
TAG
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protein sequence of NO03G03940.1

>NO03G03940.1-protein ID=NO03G03940.1-protein|Name=NO03G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MAMGPLKRLRKELQALERAPDADIDLQPQQNDIRRWQAVIRGPGETPFEG
GTFQLLIETGEICLDILKKEWSPAWSLQAACRAVMALLAAPDADSPLNCD
AGNMVRAGDMRAFNSLAKMYTAEYASVDLSLSS*
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Synonyms
Publications