jgi.p|Nanoce1779_2|571636, gene_1293 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571636
Unique Namegene_1293
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_1:199394..201269 +

Link to JBrowse

Properties
Property NameValue
TranscriptId571722
ProteinId571636
Product nameS-adenosylmethionine--tRNA ribosyltransferase-isomerase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:199394..201269 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008616queuosine biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016853isomerase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL000ncniL000Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G01190NO03G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571636mRNA_1293-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571636mRNA_1293Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|571636

>mRNA_1293-protein ID=mRNA_1293-protein|Name=jgi.p|Nanoce1779_2|571636|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MQKKGTGGKAEVLCISPSKPSWDPAVALAAPSGQSVWRCMIGGKNIKAGS
RLVLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERV
GKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQ
TGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIE
ASGSGRPILPVGTTSVRTLESLYWWGAQLLSPSSSSSSSSASSSRTKQRS
VLDLSLGQWDAYQFGGSSTRQRPCTFVPAATALDALAKQAREEGVESVGG
ETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHA
LSNGYRFLSFGDSNLTIPPARTLLPVRPGRGVGAKGGVVDWPRMGRGGGG
GREGWTCLSD*
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Synonyms
Publications