jgi.p|Nanoce1779_2|571636, mRNA_1293 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571636
Unique Name	mRNA_1293
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1876
Alignment location	scaffold_1:199394..201269 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	571722
Track	FilteredModels2
ProteinId	571636

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:199394..201269 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571636	gene_1293	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571636	mRNA_1293-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1293	CDS_1293	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:199394..201269+
coding sequence from alignment at scaffold_1:199394..201269+

mRNA sequence

>mRNA_1293 ID=mRNA_1293|Name=jgi.p|Nanoce1779_2|571636|organism=Nannochloropsis oceanica|type=mRNA|length=1876bp
CCCGCCCCTAGTAGAGCTTCCTCCAGCTAGCGCCCTCGATTACCTTCTGC
CCGACGTCCGCGTTGCAAAGCGCCCGGCTGAGCCCCGCGATGCCTCCTTG
CTTCTGGTTTCGGACGCATCCACAGATCAGGAGAACGACGGTCTTTGGAC
GTGCGACGCAACGTTTCGAGACCTACCCTCCTTTCTCCCCGCCAAGTCAC
TGCTGGTTCTCAACCAGTCACGTGTCATAACGGCTCGCCTCCTCATGCAA
AAAAAAGGGACAGGGGGGAAGGCCGAAGTCCTGTGCATCTCCCCATCAAA
GCCATCGTGGGACCCTGCTGTGGCCTTAGCTGCGCCCTCAGGCCAGAGCG
TATGGCGGTGCATGATTGGTGGCAAGAATATCAAGGCGGGGAGCCGCTTG
GTCCTGGAGGCAGGGGAGGGACTCACGCTGACGGCGGACGTGGAAAGCCG
TGAGGGCAAAAATGGCCTCGTTCGCTTTTCCTGGACGAGCATTTTCCAAC
CTACATTGCAGAGCCTGAGCTTTGGTACTGTTCTGGAGCGCGTGGGCAAG
ATTCCACTCCCACCTTACATGAATCGCGTCTCCGACGCCGCCGACGTCCA
AGACTACCAGACCGTTTATGCCATGGCGCAAGGCAGCGTGGCAGCTCCCA
CGGCCGGTCTCCACTTCACGAAATCCCTCCTCGAGCAGCTTCAGACCGGA
CCCAAGGCCATCGACCCGTGCCATCTCACCCTGCACGTGGGTGCCGGGAC
CTTTCAACCTGTGTCGGGGGACGACGTAAGCCAGCATACCATGCACTGGG
AGCGGGTTAGCGTACCCCTGACCACGCTTGACGCCCTCATCGAAGCCAGT
GGGAGTGGGCGACCCATCCTTCCTGTGGGCACCACGTCGGTAAGGACCCT
CGAGAGCCTCTACTGGTGGGGAGCGCAACTCCTGTCCCCCTCCTCCTCTT
CCTCCTCCTCTTCCGCCTCTTCGTCTCGAACCAAACAAAGAAGCGTATTG
GACTTGAGCCTGGGTCAATGGGACGCTTACCAATTCGGCGGCTCCTCGAC
ACGCCAGCGTCCTTGTACGTTTGTACCAGCAGCCACCGCTTTGGACGCCC
TTGCAAAACAAGCGCGGGAGGAAGGAGTGGAGAGCGTCGGCGGGGAAACG
CAATTAATGGTCGCCCCGGGATATCGCTTCGCTCTCTGCGATGGCTTGAT
CACAAATTTTCACCAACCCCGCTCCACGTTGCTATTGTTGGTGGGGGCAT
TGATGGGGGGACTAGGCCCCGTGCACCGTATTTATAGGCATGCTCTCTCG
AATGGCTACCGCTTTTTGAGCTTTGGTGACTCGAATCTAACGATACCGCC
GGCACGGACGCTGTTACCCGTGCGGCCGGGAAGGGGTGTGGGTGCGAAGG
GAGGCGTGGTGGATTGGCCGAGGATGGGCCGAGGTGGAGGAGGGGGAAGG
GAGGGATGGACGTGTTTGAGCGATTGATTGAGGAAGAGGAAGATGAGAGG
GGCATGGGTCATGGCACAGTCGTCGCCTTGACAGGATATTTTGAAATGAG
TAGGGGATGCAAATTAGTGTTAGTGTAGTGTAAGACGGGTTTCCCGTCGG
CCATCTGCCAACCTGAATGATAACAGTAAACATGAATGAAAGCAATGAGC
ATGAAAATGAAATGATGGGAATCAAAAGGCACTGTATTATTACTTCGATA
CATAAAATGACTGACGTCCCTCTTGCCCAGGAATTCCACCTCGCAGACAG
AGTTGGAGCGATGGCGAGAAAAAGCGTTTTTGCGGACGCCATATTGATTA
GCGGCAAGAAGATAGAGCAACAAAGCAATTCCTGACCAACGATTTTTCGG
GTACTGTGGCATCAAAAACTATGTCA

protein sequence of jgi.p|Nanoce1779_2|571636

>mRNA_1293-protein ID=mRNA_1293-protein|Name=jgi.p|Nanoce1779_2|571636|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MQKKGTGGKAEVLCISPSKPSWDPAVALAAPSGQSVWRCMIGGKNIKAGS
RLVLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERV
GKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQ
TGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIE
ASGSGRPILPVGTTSVRTLESLYWWGAQLLSPSSSSSSSSASSSRTKQRS
VLDLSLGQWDAYQFGGSSTRQRPCTFVPAATALDALAKQAREEGVESVGG
ETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHA
LSNGYRFLSFGDSNLTIPPARTLLPVRPGRGVGAKGGVVDWPRMGRGGGG
GREGWTCLSD*

mRNA from alignment at scaffold_1:199394..201269+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1293 ID=mRNA_1293|Name=jgi.p|Nanoce1779_2|571636|organism=Nannochloropsis oceanica|type=mRNA|length=1876bp|location=Sequence derived from alignment at scaffold_1:199394..201269+ (Nannochloropsis oceanica)
CCCGCCCCTAGTAGAGCTTCCTCCAGCTAGCGCCCTCGATTACCTTCTGC
CCGACGTCCGCGTTGCAAAGCGCCCGGCTGAGCCCCGCGATGCCTCCTTG
CTTCTGGTTTCGGACGCATCCACAGATCAGGAGAACGACGGTCTTTGGAC
GTGCGACGCAACGTTTCGAGACCTACCCTCCTTTCTCCCCGCCAAGTCAC
TGCTGGTTCTCAACCAGTCACGTGTCATAACGGCTCGCCTCCTCATGCAA
AAAAAAGGGACAGGGGGGAAGGCCGAAGTCCTGTGCATCTCCCCATCAAA
GCCATCGTGGGACCCTGCTGTGGCCTTAGCTGCGCCCTCAGGCCAGAGCG
TATGGCGGTGCATGATTGGTGGCAAGAATATCAAGGCGGGGAGCCGCTTG
GTCCTGGAGGCAGGGGAGGGACTCACGCTGACGGCGGACGTGGAAAGCCG
TGAGGGCAAAAATGGCCTCGTTCGCTTTTCCTGGACGAGCATTTTCCAAC
CTACATTGCAGAGCCTGAGCTTTGGTACTGTTCTGGAGCGCGTGGGCAAG
ATTCCACTCCCACCTTACATGAATCGCGTCTCCGACGCCGCCGACGTCCA
AGACTACCAGACCGTTTATGCCATGGCGCAAGGCAGCGTGGCAGCTCCCA
CGGCCGGTCTCCACTTCACGAAATCCCTCCTCGAGCAGCTTCAGACCGGA
CCCAAGGCCATCGACCCGTGCCATCTCACCCTGCACGTGGGTGCCGGGAC
CTTTCAACCTGTGTCGGGGGACGACGTAAGCCAGCATACCATGCACTGGG
AGCGGGTTAGCGTACCCCTGACCACGCTTGACGCCCTCATCGAAGCCAGT
GGGAGTGGGCGACCCATCCTTCCTGTGGGCACCACGTCGGTAAGGACCCT
CGAGAGCCTCTACTGGTGGGGAGCGCAACTCCTGTCCCCCTCCTCCTCTT
CCTCCTCCTCTTCCGCCTCTTCGTCTCGAACCAAACAAAGAAGCGTATTG
GACTTGAGCCTGGGTCAATGGGACGCTTACCAATTCGGCGGCTCCTCGAC
ACGCCAGCGTCCTTGTACGTTTGTACCAGCAGCCACCGCTTTGGACGCCC
TTGCAAAACAAGCGCGGGAGGAAGGAGTGGAGAGCGTCGGCGGGGAAACG
CAATTAATGGTCGCCCCGGGATATCGCTTCGCTCTCTGCGATGGCTTGAT
CACAAATTTTCACCAACCCCGCTCCACGTTGCTATTGTTGGTGGGGGCAT
TGATGGGGGGACTAGGCCCCGTGCACCGTATTTATAGGCATGCTCTCTCG
AATGGCTACCGCTTTTTGAGCTTTGGTGACTCGAATCTAACGATACCGCC
GGCACGGACGCTGTTACCCGTGCGGCCGGGAAGGGGTGTGGGTGCGAAGG
GAGGCGTGGTGGATTGGCCGAGGATGGGCCGAGGTGGAGGAGGGGGAAGG
GAGGGATGGACGTGTTTGAGCGATTGATTGAGGAAGAGGAAGATGAGAGG
GGCATGGGTCATGGCACAGTCGTCGCCTTGACAGGATATTTTGAAATGAG
TAGGGGATGCAAATTAGTGTTAGTGTAGTGTAAGACGGGTTTCCCGTCGG
CCATCTGCCAACCTGAATGATAACAGTAAACATGAATGAAAGCAATGAGC
ATGAAAATGAAATGATGGGAATCAAAAGGCACTGTATTATTACTTCGATA
CATAAAATGACTGACGTCCCTCTTGCCCAGGAATTCCACCTCGCAGACAG
AGTTGGAGCGATGGCGAGAAAAAGCGTTTTTGCGGACGCCATATTGATTA
GCGGCAAGAAGATAGAGCAACAAAGCAATTCCTGACCAACGATTTTTCGG
GTACTGTGGCATCAAAAACTATGTCA

Coding sequence (CDS) from alignment at scaffold_1:199394..201269+

>mRNA_1293 ID=mRNA_1293|Name=jgi.p|Nanoce1779_2|571636|organism=Nannochloropsis oceanica|type=CDS|length=1233bp|location=Sequence derived from alignment at scaffold_1:199394..201269+ (Nannochloropsis oceanica)
ATGCAAAAAAAAGGGACAGGGGGGAAGGCCGAAGTCCTGTGCATCTCCCC
ATCAAAGCCATCGTGGGACCCTGCTGTGGCCTTAGCTGCGCCCTCAGGCC
AGAGCGTATGGCGGTGCATGATTGGTGGCAAGAATATCAAGGCGGGGAGC
CGCTTGGTCCTGGAGGCAGGGGAGGGACTCACGCTGACGGCGGACGTGGA
AAGCCGTGAGGGCAAAAATGGCCTCGTTCGCTTTTCCTGGACGAGCATTT
TCCAACCTACATTGCAGAGCCTGAGCTTTGGTACTGTTCTGGAGCGCGTG
GGCAAGATTCCACTCCCACCTTACATGAATCGCGTCTCCGACGCCGCCGA
CGTCCAAGACTACCAGACCGTTTATGCCATGGCGCAAGGCAGCGTGGCAG
CTCCCACGGCCGGTCTCCACTTCACGAAATCCCTCCTCGAGCAGCTTCAG
ACCGGACCCAAGGCCATCGACCCGTGCCATCTCACCCTGCACGTGGGTGC
CGGGACCTTTCAACCTGTGTCGGGGGACGACGTAAGCCAGCATACCATGC
ACTGGGAGCGGGTTAGCGTACCCCTGACCACGCTTGACGCCCTCATCGAA
GCCAGTGGGAGTGGGCGACCCATCCTTCCTGTGGGCACCACGTCGGTAAG
GACCCTCGAGAGCCTCTACTGGTGGGGAGCGCAACTCCTGTCCCCCTCCT
CCTCTTCCTCCTCCTCTTCCGCCTCTTCGTCTCGAACCAAACAAAGAAGC
GTATTGGACTTGAGCCTGGGTCAATGGGACGCTTACCAATTCGGCGGCTC
CTCGACACGCCAGCGTCCTTGTACGTTTGTACCAGCAGCCACCGCTTTGG
ACGCCCTTGCAAAACAAGCGCGGGAGGAAGGAGTGGAGAGCGTCGGCGGG
GAAACGCAATTAATGGTCGCCCCGGGATATCGCTTCGCTCTCTGCGATGG
CTTGATCACAAATTTTCACCAACCCCGCTCCACGTTGCTATTGTTGGTGG
GGGCATTGATGGGGGGACTAGGCCCCGTGCACCGTATTTATAGGCATGCT
CTCTCGAATGGCTACCGCTTTTTGAGCTTTGGTGACTCGAATCTAACGAT
ACCGCCGGCACGGACGCTGTTACCCGTGCGGCCGGGAAGGGGTGTGGGTG
CGAAGGGAGGCGTGGTGGATTGGCCGAGGATGGGCCGAGGTGGAGGAGGG
GGAAGGGAGGGATGGACGTGTTTGAGCGATTGA

Synonyms

Publications