NO03G01190, NO03G01190 (gene) Nannochloropsis oceanica

Overview
NameNO03G01190
Unique NameNO03G01190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1533
Alignment locationchr3:368493..370025 +

Link to JBrowse

Properties
Property NameValue
DescriptionS-adenosylmethionine:trna ribosyltransferase-isomerase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:368493..370025 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0016853isomerase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008616queuosine biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR036100QueA_sf
IPR003699QueA
Homology
BLAST of NO03G01190 vs. NCBI_GenBank
Match: EWM29587.1 (s-adenosylmethionine:trna ribosyltransferase-isomerase [Nannochloropsis gaditana])

HSP 1 Score: 637.1 bits (1642), Expect = 4.700e-179
Identity = 334/520 (64.23%), Postives = 385/520 (74.04%), Query Frame = 0
Query:    4 LSQLKGVVS-APAQDDSPPL--------VELPPASALDYLLPDVRIAKRPAEPRDASLLLVSDA---STDQENDGLWTCDATFRDLPSFLPAKSLLVLNQSRVITARLLMQKKGTGGKAEVLCISPLKPSWDPAVALAAPSGQSVWQCMIGGKNIKAGSRLVLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERVGKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQTGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIEASGSGRPILPVGTTSVRTLESLYWXXXXXXXXXXXXXXXXXXXXXXXQRSVLDLSLGQWDAYQFGGSSTRQRPCTFVPAATALDALAKQAREEGVESVGGETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHALSNG-YRFLSFGDSNLTIPPARTLLPVRPGRGVGAKGGVVDWPRMGRGGGGGREGWTCLSD 511
            ++Q+ G+V+  P Q   PP+         ELPPA+ LDY LP+  IAKRPAEPRDASLLLVSDA   S+  +    W  D  FR+LPSFLPAKSLLVLN+SRVITARLLM+K+GTGGKAEVLCISP+ PSWDPA+AL A S +SVW+CMIGG+NIKAGSRLVL    GL LT  VE+REGK+GLVRFSWT          +FG VLE VGKIPLPPYMNR SD AD+QDYQTVYA A+GSVAAPTAGLHFT SLL+QL+ GP+ I+ C+LTLHVGAGTFQPV+G +V +H MHWER+ VP+  L+ LIEA+GSGRP++PVGTTSVRTLE+LYW                       + SV +LSLGQWDAY +G     Q   + VPA  AL+AL  +A+ EGV+ VGGETQLM+APGYRFALCDGLITNFHQPRSTLLLLVGA +GGLGPVHRIYRHALS G YRFLSFGDSNL IPPAR +LPVRP RG  +    V WPR G   G   E W  L D
Sbjct:   15 MTQVGGMVALRPPQPAFPPVYDEINVCPFELPPANDLDYPLPETCIAKRPAEPRDASLLLVSDASSLSSTADTVDTWVFDGIFRELPSFLPAKSLLVLNRSRVITARLLMRKEGTGGKAEVLCISPVSPSWDPAIALTALSNRSVWRCMIGGRNIKAGSRLVLTTENGLCLTGQVEAREGKDGLVRFSWTHTAHGKESPPTFGDVLEDVGKIPLPPYMNRASDTADLQDYQTVYATARGSVAAPTAGLHFTHSLLQQLRNGPQQIETCYLTLHVGAGTFQPVTGKEVGEHAMHWERIQVPMDALETLIEATGSGRPMVPVGTTSVRTLETLYWWGVRLLSALPSSCSAQRPSTLLSEDSVTNLSLGQWDAYHYGAKWPTQ-ASSLVPAVHALEALRDRAKMEGVDHVGGETQLMIAPGYRFALCDGLITNFHQPRSTLLLLVGAFLGGLGPVHRIYRHALSKGSYRFLSFGDSNLMIPPARVILPVRPKRGNVSGKCAVAWPRKGWAAGVKEERWVKLPD 533          
BLAST of NO03G01190 vs. NCBI_GenBank
Match: XP_005706453.1 (S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Galdieria sulphuraria] >EME29933.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Galdieria sulphuraria])

HSP 1 Score: 319.3 bits (817), Expect = 2.100e-83
Identity = 192/446 (43.05%), Postives = 249/446 (55.83%), Query Frame = 0
Query:   29 SALDYLLPDVRIAKRPAEPRDASLLLVSDASTDQENDGLWTCDATFRDLPSFLPAKSLLVLNQSRVITARLLMQKKGTGGKAEVLCISPL-KPSWDPAVALAAPSGQSVWQCMIGGKNIKAGSRLVLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERVGKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQTGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIEASGSGRPILPVGTTSVRTLESLYWXXXXXXXXXXXXXXXXXXXXXXXQRSVLDLSLGQWDAYQFGGS--STRQRPC-TFVPA-ATALDALAKQAREEGVESVGGETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHALSNGYRFLSFGDSNLTIPP 470
            S  DY LP+ RIA  P  PRDAS LLV+   +     G    D+TFR+L  FLP  ++L+ N S+VI ARL M+K  TGG  EVLC+ P+ K + +   A+        W C + GKN+K G++L L+  E   L A+++ +  +  L+RF+W S      +   F  +LE+ G IPLPPYM R     D   YQTVYA  +GSVAAPTAGLHFT  LL +L+   K +    +TLHVGAGTF P+  + VS+H MH ER  V LT L  L E     RP + VGTTSVRTLE+LYW                       Q    DLSL QW  Y+   S   T    C + +P     LDAL     E   +S+ G T+L++ P Y F + D +ITNFHQPRSTLL+LV A +G    +  +YRHAL + YRFLS+GD +L   P
Sbjct:   54 SDYDYQLPEDRIALSPTTPRDASKLLVAVCGS-----GTVIADSTFRNLDKFLPDNAVLISNDSKVIAARLFMRKVETGGLVEVLCLDPITKTTLESLEAV----NSCEWLCFVRGKNVKPGTQLFLDDMES-PLKAEIQEKYEREALIRFTWNS-----GREYKFRDILEKHGIIPLPPYMKRNVTKDDRTSYQTVYATNEGSVAAPTAGLHFTPQLLSKLE--QKNVSLVRVTLHVGAGTFSPIVTESVSKHDMHDERFHVTLTALKQLKENCQQSRPFVAVGTTSVRTLETLYW---------IGYQLITSEDFRSRQCPTEDLSLSQWFPYERESSLMQTNTSACNSHLPTRMEILDALISWLEERACDSIMGRTKLIIVPNYPFFMVDAMITNFHQPRSTLLMLVAAFLGDRSALFHVYRHALEHDYRFLSYGDGSLLASP 473          
BLAST of NO03G01190 vs. NCBI_GenBank
Match: KER08990.1 (hypothetical protein HY22_14415 [Chlorobium sp. GBChlB])

HSP 1 Score: 316.6 bits (810), Expect = 1.400e-82
Identity = 189/444 (42.57%), Postives = 260/444 (58.56%), Query Frame = 0
Query:   29 SALDYLLPDVRIAKRPAEPRDASLLLVSDASTDQENDGLWTCDATFRDLPSFLPAKSLLVLNQSRVITARLLMQKKGTGGKAEVLCISPLKPSWDPAVALAAPSGQSVWQCMIGGKNIKAG---SRLVLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERVGKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQTGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALI----EASGSGRPILPVGTTSVRTLESLYWXXXXXXXXXXXXXXXXXXXXXXXQRSVLDLSLGQWDAYQFGGSSTRQRPCTFVPAATALDALAKQAREEGVESVGGETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHALSNGYRFLSFGDSNL 466
            S  DY LP   IAK P   RD S LLV+DA T +           F +LP  LP+K+LL+ N ++VI+ARL +QK+ +GGK E+LCI   + S D A  L    G +VW+C+IGG+ ++ G   S+  L  G+ + L+A +  +      VRF W+       Q L F  VLE +G++PLPPY+ R +D +D   YQTVYA   GSVAAPTAGLHFT ++ ++L+   K+ID   LTLHVG GTF+P+   DV+ H MH ER++VP  TL+ L+         G  ++ VGTTSVRTLE+LYW                        R+   + L QWD+Y+           T   A+ +L  L + A + G+ ++ GETQL +APGY++ALCDG+ITNFHQP STL+LLV   + G     ++Y  AL NGYRFLS+GD++L
Sbjct:   13 SDYDYDLPAECIAKFPLAERDQSKLLVADALTGRLE------HRRFFELPDLLPSKALLICNNTKVISARLHLQKQ-SGGKVEILCIESAEASPDNAFGLMETDG-AVWKCLIGGR-VREGMELSKAGLFNGKPIFLSAKILPKTNGETQVRFQWSP------QCLPFVAVLETLGQVPLPPYLKRDADESDKVRYQTVYAKQGGSVAAPTAGLHFTDAVFDRLR--EKSIDIAELTLHVGLGTFKPIESADVADHAMHGERIAVPKDTLNKLLAQLERRKDGGGKMIAVGTTSVRTLETLYW------------FGVRLAKKDGDARNSNHIMLSQWDSYRLSDGG------TLPDASESLKTLVEWAEQRGLSTISGETQLFIAPGYQYALCDGIITNFHQPHSTLILLVATFL-GKSLWKKVYDEALQNGYRFLSYGDASL 420          
BLAST of NO03G01190 vs. NCBI_GenBank
Match: PIO48665.1 (S-adenosylmethionine tRNA ribosyltransferase [Chlorobium sp. 445])

HSP 1 Score: 315.1 bits (806), Expect = 4.000e-82
Identity = 188/436 (43.12%), Postives = 255/436 (58.49%), Query Frame = 0
Query:   33 YLLPDVRIAKRPAEPRDASLLLVSDASTDQENDGLWTCDATFRDLPSFLPAKSLLVLNQSRVITARLLMQKKGTGGKAEVLCISPLKPSWDPAVALAAPSGQSVWQCMIGGKNIKAGSRL---VLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERVGKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQTGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIEASGSGRPILPVGTTSVRTLESLYWXXXXXXXXXXXXXXXXXXXXXXXQRSVLDLSLGQWDAYQFGGSSTRQRPCTFVPAATALDALAKQAREEGVESVGGETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHALSNGYRFLSFGDSNL 466
            Y LP+ +IA  P   RD S LL+  A T +           F DLP  LPA++LLV N S+VI ARL + KK +GGK EVLC+ P +P+ D A+AL A  G   W+C++ G+N+KA   L   V+   + L L A +  + G    + F W    QP  + L F  VLE VGK PLPPY+ R    +D   YQTVYA ++GSVAAPTAGLHFT ++LE+L+   K +    LTLHVG GTF+PV   +V  H MH E++SVP  TL  L      G+P++ VGTTS+R LESLYW                        +S++++   QW+AY      +     T       L+A+ +  ++  ++ + G+TQL++ PGYR+ +CDGLITNFHQPRSTL+LLV A +GG     ++Y  AL NGYRFLS+GDS+L
Sbjct:   20 YDLPEEQIATAPLPERDQSKLLMVQAKTGE------ISHHHFSDLPDLLPAETLLVFNNSKVIAARLAL-KKQSGGKVEVLCVEPSEPNSDIALALLA-KGAVKWKCLLHGRNLKALMTLSTSVMHQAKPLLLKATLVEK-GMESTLCFEW----QP--KELPFLEVLEAVGKAPLPPYLKREPTRSDKLRYQTVYAKSEGSVAAPTAGLHFTPAVLERLR--QKGVSSAELTLHVGMGTFKPVQQSNVQHHVMHAEQISVPKQTLLTLHNHIEKGKPVVAVGTTSMRVLESLYW----------FGVKLLLKDNKVLHKSIMNVE--QWEAYTLASQLS-----TLPATVQGLEAVLECLQKHSLDGLSGKTQLIIVPGYRYMMCDGLITNFHQPRSTLILLVAAFLGG-ELWKKVYNEALQNGYRFLSYGDSSL 420          
BLAST of NO03G01190 vs. NCBI_GenBank
Match: PKV66317.1 (S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Pontibacter ramchanderi])

HSP 1 Score: 312.4 bits (799), Expect = 2.600e-81
Identity = 187/438 (42.69%), Postives = 248/438 (56.62%), Query Frame = 0
Query:   33 YLLPDVRIAKRPAEPRDASLLLVSDASTDQENDGLWTCDATFRDLPSFLPAKSLLVLNQSRVITARLLMQKKGTGGKAEVLCISPLKPSWDPAVALAAPSGQSVWQCMIGGKNIKAGSRLVLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERVGKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQTGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIEASGSGRPILPVGTTSVRTLESLYWXXXXXXXXXXXXXXXXXXXXXXXQRSVLDLSLGQWDAYQFGGSSTRQRPCTFVPAAT--ALDALAKQAREEGVESVGGETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHALSNGYRFLSFGDSNLTIP 469
            Y LPD RIAK P   RD S LL     T          D TF +LP  LP  SLLV N ++V+ ARL+  K  TGG  E+ C+ P+ P  +  +A+   +G   W+C++G         L L   EG T+TA+ E+++  + L+RF+WT         L+F  VLER G++PLPPY+NR     D   YQT+YA  +G+VAAPTAGLHFT +++  LQ   K ID  +LTLHVGAGTF+PV  D +  H MH E++ V    +D L+  S  GRP++PVGTTS+R+LESLYW                       +    +L + QW  Y+           T  P AT  AL AL         E +   TQ+++APGY F +C+GL+TNFHQP STLLLLV AL+G      ++YRHAL NGYRFLS+GDS+L +P
Sbjct:   33 YELPDERIAKFPLPERDQSKLLYYQHHT--------ISDHTFTELPELLPTGSLLVFNNTKVVQARLIFHKP-TGGAVEIFCLEPVAPHREVQLAM-QQTGSCTWKCLVGNNKRWKEGPLSLHF-EGGTVTAERETQQDGHFLIRFAWTP------AQLTFAEVLERCGRLPLPPYLNRELTPEDRTRYQTIYARNEGAVAAPTAGLHFTDNVMADLQA--KGIDSTYLTLHVGAGTFKPVKADTMEAHEMHAEQLMVSRHVVDQLL--SHLGRPLIPVGTTSMRSLESLYW--------------LGTLLLQQPELKPEELHVTQWLPYE-----------TSTPPATKDALHALLDYMARHQTEHLHASTQIIIAPGYSFKVCNGLVTNFHQPESTLLLLVAALIG--EDWKQVYRHALDNGYRFLSYGDSSLLLP 422          
BLAST of NO03G01190 vs. NCBI_GenBank
Match: WP_101443714.1 (S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Pontibacter ramchanderi])

HSP 1 Score: 312.4 bits (799), Expect = 2.600e-81
Identity = 187/438 (42.69%), Postives = 248/438 (56.62%), Query Frame = 0
Query:   33 YLLPDVRIAKRPAEPRDASLLLVSDASTDQENDGLWTCDATFRDLPSFLPAKSLLVLNQSRVITARLLMQKKGTGGKAEVLCISPLKPSWDPAVALAAPSGQSVWQCMIGGKNIKAGSRLVLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERVGKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQTGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIEASGSGRPILPVGTTSVRTLESLYWXXXXXXXXXXXXXXXXXXXXXXXQRSVLDLSLGQWDAYQFGGSSTRQRPCTFVPAAT--ALDALAKQAREEGVESVGGETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHALSNGYRFLSFGDSNLTIP 469
            Y LPD RIAK P   RD S LL     T          D TF +LP  LP  SLLV N ++V+ ARL+  K  TGG  E+ C+ P+ P  +  +A+   +G   W+C++G         L L   EG T+TA+ E+++  + L+RF+WT         L+F  VLER G++PLPPY+NR     D   YQT+YA  +G+VAAPTAGLHFT +++  LQ   K ID  +LTLHVGAGTF+PV  D +  H MH E++ V    +D L+  S  GRP++PVGTTS+R+LESLYW                       +    +L + QW  Y+           T  P AT  AL AL         E +   TQ+++APGY F +C+GL+TNFHQP STLLLLV AL+G      ++YRHAL NGYRFLS+GDS+L +P
Sbjct:   15 YELPDERIAKFPLPERDQSKLLYYQHHT--------ISDHTFTELPELLPTGSLLVFNNTKVVQARLIFHKP-TGGAVEIFCLEPVAPHREVQLAM-QQTGSCTWKCLVGNNKRWKEGPLSLHF-EGGTVTAERETQQDGHFLIRFAWTP------AQLTFAEVLERCGRLPLPPYLNRELTPEDRTRYQTIYARNEGAVAAPTAGLHFTDNVMADLQA--KGIDSTYLTLHVGAGTFKPVKADTMEAHEMHAEQLMVSRHVVDQLL--SHLGRPLIPVGTTSMRSLESLYW--------------LGTLLLQQPELKPEELHVTQWLPYE-----------TSTPPATKDALHALLDYMARHQTEHLHASTQIIIAPGYSFKVCNGLVTNFHQPESTLLLLVAALIG--EDWKQVYRHALDNGYRFLSYGDSSLLLP 404          
BLAST of NO03G01190 vs. NCBI_GenBank
Match: WP_025603991.1 (S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Pontibacter actiniarum] >ARS34161.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Pontibacter actiniarum])

HSP 1 Score: 307.0 bits (785), Expect = 1.100e-79
Identity = 188/438 (42.92%), Postives = 251/438 (57.31%), Query Frame = 0
Query:   33 YLLPDVRIAKRPAEPRDASLLLVSDASTDQENDGLWTCDATFRDLPSFLPAKSLLVLNQSRVITARLLMQKKGTGGKAEVLCISPLKPSWDPAVALAAPSGQSVWQCMIG-GKNIKAGSRLVLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERVGKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQTGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIEASGSGRPILPVGTTSVRTLESLYWXXXXXXXXXXXXXXXXXXXXXXXQRSVLDLSLGQWDAYQFGGSSTRQRPCTFVPAAT-ALDALAKQAREEGVESVGGETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHALSNGYRFLSFGDSNLTIP 469
            Y LPD RIAK P   RD S LL           G    D TF DLP  LP  +LLV N ++V+ ARLLMQK+ TGG  E+ C+ P+ P  +  +A+   +G S W+C++G  K  K+G   V    EG  L A  E+++  + L+RF+W          L+F  VLER G++PLPPY+NR     D   YQT+YA  QG+VAAPTAGLHFT  ++ QLQ     +D  +LTLHVGAGTF+PV  + + +H MH E++ +  T L  L+    +  P++PVGTTS+R+LESLYW                       +  +  L + QW AY+           T  PAAT AL AL      +G + +   TQ+++APGY F +C GL+TNFHQP STLLLLV AL+G       +Y+HAL NGYRFLS+GDS+L +P
Sbjct:   14 YELPDKRIAKFPLPERDQSKLL-------HYRQG-QIVDRTFTDLPQLLPPHTLLVFNDTKVVQARLLMQKE-TGGLVEIFCLEPVAPHREVQLAM-QQTGSSTWKCLVGNNKRWKSGP--VKLHFEGGILEAAREAQQEGHFLIRFTWDP------AELTFAEVLERCGRLPLPPYLNRDLTPDDHTRYQTIYANQQGAVAAPTAGLHFTARVMHQLQAA--GMDTAYLTLHVGAGTFKPVKAEVMEEHEMHAEQLYITRTFLQRLLRQLDN--PVIPVGTTSMRSLESLYW--------------LGAKVLEQPELPMQQLHVTQWQAYE----------STNPPAATNALQALLAYMDRQGTDYLHASTQIIIAPGYTFRICRGLVTNFHQPESTLLLLVSALIG--ENWRTVYKHALDNGYRFLSYGDSSLLLP 403          
BLAST of NO03G01190 vs. NCBI_GenBank
Match: WP_076670036.1 (S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Pontibacter indicus] >SIT92696.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Pontibacter indicus])

HSP 1 Score: 307.0 bits (785), Expect = 1.100e-79
Identity = 188/437 (43.02%), Postives = 247/437 (56.52%), Query Frame = 0
Query:   33 YLLPDVRIAKRPAEPRDASLLLVSDASTDQENDGLWTCDATFRDLPSFLPAKSLLVLNQSRVITARLLMQKKGTGGKAEVLCISPLKPSWDPAVALAAPSGQSVWQCMIG-GKNIKAGSRLVLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERVGKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQTGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIEASGSGRPILPVGTTSVRTLESLYWXXXXXXXXXXXXXXXXXXXXXXXQRSVLDLSLGQWDAYQFGGSSTRQRPCTFVPAATALDALAKQAREEGVESVGGETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHALSNGYRFLSFGDSNLTIP 469
            Y LP+ RIAK P   RD S LL        +  G+   D TF DLP  LPA SLLV N ++V+ ARL+  +K TGG  EV C+ P+KP  +  +A+   +    W+C++G  K  K G   +    EG  +TA+ E+++  + L+RF+WT         L+F  VLER GK+PLPPY+NR     D   YQT+YA  +G+VAAPTAGLHFT  ++ QLQ   K ID  +LTLHVGAGTF+PV  D +  H MH E++ V    +  L+E    GRP++PVGTTS+R+LESLYW                            DL + QW  Y+           T   AA AL  L         + +   TQ+++APGY F LC GL+TNFHQP STLLLLV AL+G      ++YRHAL N YRFLS+GDS+L +P
Sbjct:   15 YELPEERIAKFPLPERDQSKLLY------YKQQGI--ADHTFTDLPELLPAGSLLVFNNTKVVQARLIF-RKPTGGAVEVFCLEPVKPHREVQLAM-QQTRSCTWKCLVGNNKRWKEGPLKIF--FEGGVVTAEREAQQEGHFLIRFTWTP------AELTFAEVLERCGKLPLPPYLNRELIPEDRSRYQTIYARNEGAVAAPTAGLHFTDKVMAQLQA--KGIDSTYLTLHVGAGTFKPVKADTMETHEMHAEQLMVSREVVAQLLE--HLGRPLIPVGTTSMRSLESLYWLGTLLWRQPDLRPE--------------DLHVTQWLPYEAE---------TPPAAAEALQTLLNYMDRHQTQYLHASTQIIIAPGYTFRLCKGLVTNFHQPESTLLLLVAALIG--EDWKQVYRHALDNDYRFLSYGDSSLLLP 404          
BLAST of NO03G01190 vs. NCBI_GenBank
Match: WP_054411582.1 (S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Hymenobacter sp. DG25A] >ALD20312.1 S-adenosylmethionine tRNA ribosyltransferase [Hymenobacter sp. DG25A])

HSP 1 Score: 306.2 bits (783), Expect = 1.900e-79
Identity = 189/441 (42.86%), Postives = 253/441 (57.37%), Query Frame = 0
Query:   33 YLLPDVRIAKRPAEPRDASLLLVSDASTDQENDGLWTCDATFRDLPSFLPAKSLLVLNQSRVITARLLMQKKGTGGKAEVLCISPLKP--SWDPAVALAAPSGQSVWQCMIG-GKNIKAGSRLV--LEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERVGKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQTGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIEASGSGRPILPVGTTSVRTLESLYWXXXXXXXXXXXXXXXXXXXXXXXQRSVLDLSLGQWDAYQFGGSSTRQRPCTFVPAATALDALAKQAREEGVESVGGETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHALSNGYRFLSFGDSNLTIP 469
            Y LP  RIA  P   RD S LLV          G  T D  F +LP+ LPA SLLV N ++V+ ARL   K  TGG  E+ C+ P+ P  + +PA+     +G  VW+C++G GK  K+G  L+  +  G+  TLTA+ +       +++FSW    QP    L F  VL   G +PLPPY+NR     D   YQTVYA  +G+VAAPTAGLHF++++L++LQ   + I+  H+TLHVGAGTFQPV  D +++H MH E +SV  T L  L+  + +  P+L VGTTS+RTLESLYW                         + + L + QW  Y+         P + +PAA AL AL     + G + +   TQL++APGYRF +  GLITNFHQP STLLLLV AL+G      ++Y HALS  YRFLS+GDS+L +P
Sbjct:   15 YQLPPERIAPEPLPQRDQSRLLV-------YRQGQLT-DRRFYELPTELPADSLLVFNDTKVVRARLFAHKP-TGGIIELFCLEPVAPHRAIEPAM---QQTGSCVWKCLVGNGKRWKSGPVLLEFMAQGQPATLTAERQEVADGYSIIQFSW----QPA--ELPFAEVLRGAGHLPLPPYLNRPDTDVDAVRYQTVYAAQEGAVAAPTAGLHFSEAVLQELQA--RGIETAHVTLHVGAGTFQPVKADRMAEHPMHAEPISVTPTLLRQLL--AHTQGPVLAVGTTSLRTLESLYW--------------LGVQLLLEPASANMSLHVSQWQPYE---------PGSEIPAAEALQALLHYLEQTGADVLHATTQLLIAPGYRFRIAQGLITNFHQPESTLLLLVAALVG--PQWRQLYEHALSKDYRFLSYGDSSLLLP 408          
BLAST of NO03G01190 vs. NCBI_GenBank
Match: WP_089321217.1 (S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Pontibacter ummariensis] >SNT13453.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Pontibacter ummariensis] >PRY06744.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Pontibacter ummariensis])

HSP 1 Score: 306.2 bits (783), Expect = 1.900e-79
Identity = 184/437 (42.11%), Postives = 254/437 (58.12%), Query Frame = 0
Query:   33 YLLPDVRIAKRPAEPRDASLLLVSDASTDQENDGLWTCDATFRDLPSFLPAKSLLVLNQSRVITARLLMQKKGTGGKAEVLCISPLKPSWDPAVALAAPSGQSVWQCMIG-GKNIKAGSRLVLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERVGKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQTGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIEASGSGRPILPVGTTSVRTLESLYWXXXXXXXXXXXXXXXXXXXXXXXQRSVLDLSLGQWDAYQFGGSSTRQRPCTFVPAATALDALAKQAREEGVESVGGETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHALSNGYRFLSFGDSNLTIP 469
            Y LP+ RIAK P   RD S LL+               D TF DLP  LP +SLLV N ++V+ ARLL QK+ TGG  E+ C+ P+ P  +  +A+   +G  VW+C++G  K  K+GS  V    +G  LTA+ ++++  + L+RF+W    +P    L+F  VLER GK+PLPPY+NR     D   YQT+YA  QG+VAAPTAGLHFT+ ++E+L+   + I   +LTLHVGAGTF+PV  + + +H MH E++ +    L  L+      +PI+PVGTTS+R+LESLYW                       +  + DLS+ QW AY+     T         A  AL AL      +    +   TQ+++APGY F +C GL+TNFHQP STLLLLV AL+G      ++Y+HAL N YRFLS+GDS+L +P
Sbjct:   14 YELPEERIAKFPLPERDQSKLLLYRQGQ--------MADHTFTDLPQLLPPRSLLVFNDTKVVQARLLFQKE-TGGTVEIFCLEPVAPYQEVQLAM-QQTGNCVWKCLVGNNKRWKSGS--VKLRFDGGMLTAERKAQQEGHFLIRFTW----EPA--ELTFAEVLERCGKLPLPPYLNRDLTPDDHTRYQTIYANQQGAVAAPTAGLHFTERVMEKLR--EQQIATAYLTLHVGAGTFKPVKAEVMEEHEMHAEQLYITKPLLQRLL--LQEEKPIIPVGTTSMRSLESLYW--------------LGAKVLEQPELPLKDLSVSQWQAYETVAPPT---------ATDALSALLAYMERQHANYLHASTQIIIAPGYTFRICKGLVTNFHQPESTLLLLVSALIG--EDWRKVYQHALENDYRFLSYGDSSLLLP 403          
The following BLAST results are available for this feature:
BLAST of NO03G01190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29587.14.700e-17964.23s-adenosylmethionine:trna ribosyltransferase-isome... [more]
XP_005706453.12.100e-8343.05S-adenosylmethionine:tRNA ribosyltransferase-isome... [more]
KER08990.11.400e-8242.57hypothetical protein HY22_14415 [Chlorobium sp. GB... [more]
PIO48665.14.000e-8243.12S-adenosylmethionine tRNA ribosyltransferase [Chlo... [more]
PKV66317.12.600e-8142.69S-adenosylmethionine:tRNA ribosyltransferase-isome... [more]
WP_101443714.12.600e-8142.69S-adenosylmethionine:tRNA ribosyltransferase-isome... [more]
WP_025603991.11.100e-7942.92S-adenosylmethionine:tRNA ribosyltransferase-isome... [more]
WP_076670036.11.100e-7943.02S-adenosylmethionine:tRNA ribosyltransferase-isome... [more]
WP_054411582.11.900e-7942.86S-adenosylmethionine:tRNA ribosyltransferase-isome... [more]
WP_089321217.11.900e-7942.11S-adenosylmethionine:tRNA ribosyltransferase-isome... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL070nonsL070Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR053ngnoR053Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005795NSK005795Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G01190.1NO03G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571636gene_1293Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100006g53gene1073Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G01190.1NO03G01190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G01190 ID=NO03G01190|Name=NO03G01190|organism=Nannochloropsis oceanica|type=gene|length=1533bp
ATGGAGCCACTATCACAATTGAAAGGTGTAGTCTCAGCCCCAGCCCAAGA
CGACAGCCCGCCCCTAGTAGAGCTTCCTCCAGCTAGCGCCCTCGATTACC
TTCTGCCCGACGTCCGCATTGCAAAGCGCCCGGCTGAGCCCCGCGATGCC
TCCTTGCTTCTGGTTTCGGACGCATCCACAGATCAGGAGAACGACGGTCT
TTGGACGTGCGACGCAACGTTTCGAGACCTACCCTCCTTTCTCCCCGCCA
AGTCACTGCTGGTTCTCAACCAGTCACGTGTCATAACGGCTCGCCTCCTC
ATGCAAAAAAAAGGGACAGGGGGGAAGGCCGAAGTCCTGTGCATCTCCCC
ATTAAAGCCATCGTGGGACCCTGCTGTGGCCTTAGCTGCGCCCTCAGGCC
AGAGCGTATGGCAGTGCATGATTGGTGGCAAGAATATCAAGGCGGGGAGC
CGCTTGGTCCTGGAGGCAGGGGAGGGACTCACGCTGACGGCGGACGTGGA
AAGCCGTGAGGGCAAAAATGGCCTCGTTCGCTTTTCCTGGACGAGCATTT
TCCAACCTACATTGCAGAGCCTGAGCTTTGGTACTGTTCTGGAGCGCGTG
GGCAAGATTCCACTCCCACCTTACATGAATCGCGTCTCCGACGCCGCCGA
CGTCCAAGACTACCAGACCGTTTATGCCATGGCGCAAGGCAGCGTGGCAG
CTCCCACGGCCGGTCTCCACTTCACGAAATCCCTCCTCGAGCAGCTTCAG
ACCGGACCCAAGGCCATCGACCCGTGCCATCTCACCCTGCACGTGGGTGC
CGGGACCTTTCAACCTGTGTCGGGGGACGACGTAAGCCAGCATACCATGC
ACTGGGAGCGGGTTAGCGTACCCCTGACCACGCTTGACGCCCTCATCGAA
GCCAGTGGGAGTGGGCGACCCATCCTTCCTGTGGGCACCACGTCGGTAAG
GACCCTCGAGAGCCTCTACTGGTGGGGAGCGCAACTCCTGTCCCCCTCCT
CCTCTTCCTCCTCCTCTTCCGCCTCTTCGTCTCGAACCAAACAAAGAAGC
GTATTGGACTTGAGCCTGGGTCAATGGGACGCTTACCAATTCGGCGGCTC
CTCGACACGCCAGCGTCCTTGTACGTTTGTACCAGCAGCCACCGCTTTGG
ACGCCCTTGCAAAACAAGCGCGGGAGGAAGGAGTGGAGAGCGTCGGCGGG
GAAACGCAATTAATGGTCGCCCCGGGATATCGCTTCGCTCTCTGCGATGG
CTTGATCACAAATTTTCACCAACCCCGCTCCACGTTGCTATTGTTGGTGG
GGGCATTGATGGGGGGACTAGGCCCCGTGCACCGTATTTATAGGCATGCT
CTCTCGAATGGCTACCGCTTTTTGAGCTTTGGTGACTCGAATCTAACGAT
ACCGCCGGCACGGACGCTGTTACCCGTGCGGCCGGGAAGGGGTGTGGGTG
CGAAGGGAGGCGTGGTGGATTGGCCGAGGATGGGCCGAGGTGGAGGAGGG
GGAAGGGAGGGATGGACGTGTTTGAGCGATTGA
back to top

protein sequence of NO03G01190.1

>NO03G01190.1-protein ID=NO03G01190.1-protein|Name=NO03G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=511bp
MEPLSQLKGVVSAPAQDDSPPLVELPPASALDYLLPDVRIAKRPAEPRDA
SLLLVSDASTDQENDGLWTCDATFRDLPSFLPAKSLLVLNQSRVITARLL
MQKKGTGGKAEVLCISPLKPSWDPAVALAAPSGQSVWQCMIGGKNIKAGS
RLVLEAGEGLTLTADVESREGKNGLVRFSWTSIFQPTLQSLSFGTVLERV
GKIPLPPYMNRVSDAADVQDYQTVYAMAQGSVAAPTAGLHFTKSLLEQLQ
TGPKAIDPCHLTLHVGAGTFQPVSGDDVSQHTMHWERVSVPLTTLDALIE
ASGSGRPILPVGTTSVRTLESLYWWGAQLLSPSSSSSSSSASSSRTKQRS
VLDLSLGQWDAYQFGGSSTRQRPCTFVPAATALDALAKQAREEGVESVGG
ETQLMVAPGYRFALCDGLITNFHQPRSTLLLLVGALMGGLGPVHRIYRHA
LSNGYRFLSFGDSNLTIPPARTLLPVRPGRGVGAKGGVVDWPRMGRGGGG
GREGWTCLSD*
back to top
Synonyms
Publications