jgi.p|Nanoce1779_2|611415, gene_10585 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611415
Unique Namegene_10585
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_56:39271..44788 +

Link to JBrowse

Properties
Property NameValue
TranscriptId611501
ProteinId611415
Product nameArmadillo-type fold
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:39271..44788 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005515protein binding
GO:0008270zinc ion binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL078ncniL078Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G05200NO05G05200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611415mRNA_10585-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611415mRNA_10585Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|611415

>mRNA_10585-protein ID=mRNA_10585-protein|Name=jgi.p|Nanoce1779_2|611415|organism=Nannochloropsis oceanica|type=polypeptide|length=787bp
MPIILTVRGKEAERGGGGGEKPSSFVKEEGKSVCRGIGETYVIAFVGVAR
ALPLPCLLLYPLLLPLCEKGVGSLFALPLSPHPPTDPPSLPLTAFTKAPS
IHKLDPCVICLEPIEEGADLTSLLGCEDRHHFHANCINSWLERNATCPTC
RKGATRFPFLRRMSESPQDPAVQYKGLVAIVKTASVEGPPQYSIQNVTRL
GELGACRLVATAMRTFIGDRCIQLLGLEAIEALAAKSEGARAHFEQEAAE
TLFERIFELYPLDKDLHAAACQALVGLATGHPDWQTRLGCAGLCKCVAEI
LRRWPDDYGIQLSGLYALNALLSRHEANAQRVFDAGAGALLVHMMKAFWR
DLDVLDGAVTAVYSLSARGPKERGALGQVDAGRVLLAVMAAHPDARDIQV
KCCFTLAKLAWQHPENRQRLVALKAALVVTQALKKHPVDVPVQVAGAAAM
VALYMPLAVGHDLSESRNGNGTTILLNKTAVLLTSPSQVQLKGSHLSATT
PADVPTTSSPSTSMQPPHANCTALAAREIETGEAAAGRGKGSFVEGNGYP
EAQAFQALVCALAAIPAEPELELSASPALLFLLEAVNDRQPLLDDVTTAA
RFLAAMRNYKGDEDSQGIYLEVAILITDARPAAREALLQAGIVPHILELM
ARYLSVAPLQEKCCMILATLTEESPEAAEKVWNEESMFALVEAMKAHPNH
SVLQHFALSCLQNLAEEGTAAQRANLLTPPVLSLVAMALAFHPHDEDISN
AALGLVVSLAAQAREGGGREREEGREGESKFADIEA*
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Synonyms
Publications