NO05G05200, NO05G05200 (gene) Nannochloropsis oceanica
|
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G05200 vs. NCBI_GenBank
Match: EWM27877.1 (ring u-box domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 865.9 bits (2236), Expect = 1.200e-247 Identity = 568/1003 (56.63%), Postives = 637/1003 (63.51%), Query Frame = 0
Query: 3 MDMDCQMG-GPVRTCERGPYANHFDAFTKAPSIHKLDPCVICLEPIEEGADLTSLLGCEDRHHFHANCINSWLERNATCPTCRKGATRFPFLRRMSESPQDPAVQYKGLVAIVKTASVEGPPQYSIQNVTRLGELGACRLVATAMRTFIGDRCIQLLGLEAIEALAAKSEGARAHFEQEAAETLFERIFELYPLDKDLQAAACQALVGLATGHPDWQTRLGCAGLCKCVAEILRRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVPVQVAGAAAMVALYMPLAVGHDLSESRNGNGTTILLNKTAVLLTSPSQVQLKGSHLSATTPADVPTTSSPSTSMQPPHANGTALAAREIETGEAAAGRGKGSFVEGNGYPEAQAFQALVCALAAIPAEPELELSASPALLFLLEAVNDRQPLLDDVTTAARFLAAMRNYKGDEDSQGIYLEVAILITDARPAAREALLQAGIVPHILELMARYLSVAPLQEKCCMILATLTEESPEAAEKVWNEESMFALVEAMKAHPNHSVLQHFALSCLQNLAEEGTAAQRANLLTPPVLSLVAMALAFHPHDEDISNAALGLVVSLAAQDINS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDINGNGTPPSSHSSPSGPAYVHAVLRLLTAVWKHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERVGALGVLRWLTVVARDCAPNEVTLLSGDNTVHAMFEEVAGRLATTHPRPHTHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQGKRLCLDLVASLPQKGQATSWPRACGAVVEGLQEGREGGALALGALAAVVALAEGNKQNKNVLQGLGAAKGLGVVAAKMGGKEGGREGEVVAKAFEALR 1003
M+MDCQMG GPVRTCERGPY HFD+F K PS+ +L+PCVICLEPIEEGADLTSLLGCEDRHHFHANCINSWLERNATCPTCRKGATRFPFLRRM+ESP DP+VQY+GL+AIVKTASVEGPPQYSIQNVTRLGELGACRLV TAM+TF GDRCIQL+GLEAIEALAAKSEGARA+F+QE+AE LF RIFE++ DKDLQAAACQALVGLATGHP+WQ RLG AGLC V E LR+W DV + VAG+AAMVALYMPLA+ L+E TTILLNKTA LLTSPS H P V S +PP RE E G +G+G EAQAFQALV ALA IPAE ELE+SASPALLFLLE VN R PLLDD TA+ F+AAM NY DEDSQ IYLEVAILITDA P ARE LLQ+GI +L+LM RYLSVA LQEKCCM+LATLTEESPE E+VWNE+ M ALV+ +KAHP+ VLQHFALSCLQNLAE+G+ QR++L+TP VLSLVA++LA HP DEDI +AALGL+VSLAAQ+++S XXXXXXXXXXXXXXXX S+ PSGP+YV AVL +L AVWK I R+ ALG+L+WLT+VARDCAP+EV +LS D +VH MFEEVAG LA +HPR H+H XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KRLCLDLVASLPQ+ TSWPRACGAVV GLQEG+ GA+ L ALA VVALAEGN+QNK+VLQGLGA KGL VAA + RE E++ KA EALR
Sbjct: 1 MEMDCQMGEGPVRTCERGPYVYHFDSFFKGPSVPRLNPCVICLEPIEEGADLTSLLGCEDRHHFHANCINSWLERNATCPTCRKGATRFPFLRRMAESPLDPSVQYQGLLAIVKTASVEGPPQYSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYSLSSRGAVERSCLGQLDCCRVLLAVMAAHPDARDLQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQRLAE----KATTILLNKTAFLLTSPS-----AQHKFHHHPPSVLANGS-----EPPPFQQAVGWNRENPAKERPTDL-NGPTRDGDGMAEAQAFQALVRALATIPAESELEISASPALLFLLEVVNGRHPLLDDQPTASNFVAAMENYARDEDSQDIYLEVAILITDASPTAREMLLQSGITRCVLDLMKRYLSVASLQEKCCMVLATLTEESPETVERVWNEQMMAALVDVVKAHPSQPVLQHFALSCLQNLAEDGSPLQRSSLITPSVLSLVALSLALHPTDEDIGSAALGLIVSLAAQEMDSPGQIRTCQHASNLHTNXXXXXXXXXXXXXXXXXXXXXXXIAASTLPVPSGPSYVRAVLSILRAVWKQI-------HSSSSVASSHSSYSSNVLDEKEITRLSALGILKWLTLVARDCAPDEVAILSDDASVHTMFEEVAGGLAISHPRSHSH----------APSTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLIDTAEMHAKRLCLDLVASLPQRDLETSWPRACGAVVGGLQEGKGRGAVTLSALAGVVALAEGNEQNKSVLQGLGAGKGLSAVAAVV----ETRERELLTKAQEALR 967
BLAST of NO05G05200 vs. NCBI_GenBank
Match: XP_005852751.1 (Aardvark [Nannochloropsis gaditana CCMP526] >EKU23081.1 Aardvark [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 480.3 bits (1235), Expect = 1.400e-131 Identity = 404/897 (45.04%), Postives = 459/897 (51.17%), Query Frame = 0
Query: 146 MRTFIGDRCIQLLGLEAIEALAAKSEGARAHFEQEAAETLFERIFELYPLDKDLQAAACQALVGLATGHPDWQTRLGCAGLCKCVAEILRRW----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVPVQVAGAAAMVALYMPLAVGHDLSESR----------------------NGNGTTILLNKTAVLLTSPSQVQLKGSHLSATTPADVPTTSSPSTSMQPPHANGTALAAREIETGEAAAGRGKGSFVEGNGYPEAQAFQALVCALAAIPAEPELELSASPALLFLLEAVNDRQPLLDDVTTAARFLAAMRNYKGDEDSQGIYLEVAILITDARPAAREALLQAGIVPHILELMARYLSVAPLQEKCCMILATLTEESPEAAEKVWNEESMFALVEAMKAHPNHSVLQHFALSCLQNLAEEGTAAQRANLLTPPVLSLVAMALAFHPHDEDISNAALGLVVSLAAQDINS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDINGNGTPPSSHSSPSGPAYVHAVLRLLTAVWKHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERVGALGVLRWLTVVARDCAPNEVTLLSGDNTVHAMFEEVAGRLATTHPRPHTHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQGKRLCLDLVASLPQKGQATSWPRACGAVVEGLQEGREGGALALGALAAVVALAEGNKQNKNVLQGLGAAKGLGVVAAKMGGKEGGREGEVVAKAFEALR 1003
M+TF GDRCIQL+GLEAIEALAAKSEGARA+F+QE+AE LF RIFE++ DKDLQAAACQALVGLATGHP+WQ RLG AGLC V E LR+W DV + VAG+AAMVALYMPLA+ L+E + TTILLNKTA L TSP SA +PP RE E G +G+G EAQAFQALV ALA IPAE ELE+SASPALLFLLE VN R PLLDD TA+ F+AAM NY DEDSQ IYLEVAILITDA P ARE LLQ M ALV+ +KAHP+ VLQHFALSCLQNLAE+G+ QR++L+TP VLSLVA++LA HP DEDI +AALGL+VSLAAQ+++S XXXXXXXXXXXXXXXX S+ PSGP+YV AVL +L AVWK I R+ ALG+L+WLT+VARDCAP+EV +LS D +VH MFEEVAG LA +HPR H+H XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KRLCLDLVASLPQ+ TSWPRACGAVV GLQEG+ GA+ L ALA VVALAEGN+QNK+VLQGLGA KGL VAA + RE E++ KA EALR
Sbjct: 1 MQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSDHWVLLALPHSSLFLPSLLPSLPASLAAPFPPSSTGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYRAGFPSSLDVLPPRMYQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQRLAEKAWNTVTSPHHLPPLLSSLHSTLLSPTATTILLNKTAFLXTSP----------SAQHKFXXXXXXXXXNGSEPPPFQQAVGWNRENPAKERPTDL-NGPTRDGDGMAEAQAFQALVRALATIPAESELEISASPALLFLLEVVNGRHPLLDDQPTASNFVAAMENYARDEDSQDIYLEVAILITDASPTAREMLLQ----------------------------------------------MMAALVDVVKAHPSQPVLQHFALSCLQNLAEDGSPLQRSSLITPSVLSLVALSLALHPTDEDIGSAALGLIVSLAAQEMDSPGQIRTCQHASNLHTNXXXXXXXXXXXXXXXXXXXXXXXIAASTLPVPSGPSYVRAVLSILRAVWKQI-------HSSSSVASSHSSYSSNVLDEKEITRLSALGILKWLTLVARDCAPDEVAILSDDASVHTMFEEVAGGLAISHPRSHSH----------APSTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLIDTAEMHAKRLCLDLVASLPQRDLETSWPRACGAVVGGLQEGKGRGAVTLSALAGVVALAEGNEQNKSVLQGLGAGKGLSAVAAVV----ETRERELLTKAQEALR 819
BLAST of NO05G05200 vs. NCBI_GenBank
Match: XP_005856144.1 (Aardvark [Nannochloropsis gaditana CCMP526] >EKU20212.1 Aardvark [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 455.3 bits (1170), Expect = 4.900e-124 Identity = 405/950 (42.63%), Postives = 457/950 (48.11%), Query Frame = 0
Query: 125 YSIQNVTRLGELGACRLVATAMRTFIGDRCIQLLGLEAIEALAAKSEGARAHFEQEAAETLFERIFELYPLDKDLQAAAC--------------------------------QALVGLATGHPDWQTRLGCAGLCKCVAEILRRW----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVPVQVAGAAAMVALYMPLAVGHDLSESR----------------------NGNGTTILLNKTAVLLTSPSQVQLKGSHLSATTPADVPTTSSPSTSMQPPHANGTALAAREIETGEAAAGRGKGSFVEGNGYPEAQAFQALVCALAAIPAEPELELSASPALLFLLEAVNDRQPLLDDVTTAARFLAAMRNYKGDEDSQGIYLEVAILITDARPAAREALLQAGIVPHILELMARYLSVAPLQEKCCMILATLTEESPEAAEKVWNEESMFALVEAMKAHPNHSVLQHFALSCLQNLAEEGTAAQRANLLTPPVLSLVAMALAFHPHDEDISNAALGLVVSLAAQDINS--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDINGNGTPPSSHSSPSGPAYVHAVLRLLTAVWKHIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERVGALGVLRWLTVVARDCAPNEVTLLSGDNTVHAMFEEVAGRLATTHPRPHTHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQGKRLCLDLVASLPQKGQATSWPRACGAVVEGLQEGREGGALALGALAAVVALAEGNKQNKNVLQGLGAAKGLGVVAAKMGGKEGGREGEVVAKAFEALR 1003
YSIQNVTRLGELGACRLV TAM+TF GDRCIQL+GLEAIEALAAKSEGARA+F+QE+AE LF RIFE++ DKDLQAAAC QALVGLATGHP+WQ RLG AGLC V E LR+W DV + VAG+AAMVALYMPLA+ L+E + TTILLNKTA L TSP SA +PP RE E G +G+G EAQAFQALV ALA IPAE ELE+SASPALLFLLE VN R PLLDD TA+ F+AAM NY DEDSQ IYLEVAILITDA P ARE L LQNLAE+G+ QR++L+TP VLSLVA++LA HP DEDI +AALGL+VSLAAQ+++S XXXXXXXXXXXXXXXX S+ PSGP+YV AVL +L AVWK I R+ ALG+L+WLT+VARDCAP+EV +LS D +VH MFEEVAG LA +HPR H+H XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KRLCLDLVASLPQ+ TSWPRACGAVV GLQEG+ GA+ L ALA VVALAEGN+QNK+VLQGLGA KGL VAA + RE E++ KA EALR
Sbjct: 44 YSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQDYRRRNRVQRPGSRFSNAFIPPRPPAFFLVLQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSDHWVLLALPHSSLFLPSLLPSLPASLAAPFPPSSTGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYRAGFPSSLDVLPPRMYQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQRLAEKAWNTVTSPHHLPPLLSSLHSTLLSPTATTILLNKTAFLXTSP----------SAQHKFXXXXXXXXXNGSEPPPFQQAVGWNRENPAKERPTDL-NGPTRDGDGMAEAQAFQALVRALATIPAESELEISASPALLFLLEVVNGRHPLLDDQPTASNFVAAMENYARDEDSQDIYLEVAILITDASPTAREML-------------------------------------------------------------------------LQNLAEDGSPLQRSSLITPSVLSLVALSLALHPTDEDIGSAALGLIVSLAAQEMDSPGQIRTCQHASNLHTNXXXXXXXXXXXXXXXXXXXXXXXIAASTLPVPSGPSYVRAVLSILRAVWKQI-------HSSSSVASSHSSYSSNVLDEKEITRLSALGILKWLTLVARDCAPDEVAILSDDASVHTMFEEVAGGLAISHPRSHSH----------APSTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLIDTAEMHAKRLCLDLVASLPQRDLETSWPRACGAVVGGLQEGKGRGAVTLSALAGVVALAEGNEQNKSVLQGLGAGKGLSAVAAVV----ETRERELLTKAQEALR 888
BLAST of NO05G05200 vs. NCBI_GenBank
Match: XP_010095015.1 (RING-H2 finger protein ATL52 [Morus notabilis] >EXB58121.1 RING-H2 finger protein ATL52 [Morus notabilis]) HSP 1 Score: 66.2 bits (160), Expect = 6.400e-7 Identity = 29/65 (44.62%), Postives = 39/65 (60.00%), Query Frame = 0
Query: 40 CVICLEPIEEGADLTSLLGCEDRHHFHANCINSWLERNATCPTCRKGATRFPFLRRMSESPQDPA 105
C +CL EEG ++ +L GC H FHA CI+ WL + TCP CR AT P + R E+P++ A
Sbjct: 90 CAVCLSEFEEGEEMRALPGC--AHAFHAPCIDIWLFSHLTCPICRADATASPVMLRSPETPEEVA 152 The following BLAST results are available for this feature:
BLAST of NO05G05200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G05200 ID=NO05G05200|Name=NO05G05200|organism=Nannochloropsis oceanica|type=gene|length=7547bpback to top protein sequence of NO05G05200.1 >NO05G05200.1-protein ID=NO05G05200.1-protein|Name=NO05G05200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1003bpback to top Synonyms
Publications
|