GapC1, gene9420 (gene) Nannochloropsis gaditana

Overview
NameGapC1
Unique Namegene9420
Typegene
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:187288..189838 +

Link to JBrowse

Properties
Property NameValue
Locus tagNaga_100081g16
Gene biotypeprotein_coding
GeneGapC1
GbkeyGene
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:187288..189838 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
SRP2295572021-06-30
GO annotation for N. gaditana B312020-04-08
PRJNA1747702019-07-03
PXD0084992019-07-03
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
GO:0006091generation of precursor metabolites and energy
GO:0005975carbohydrate metabolic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoL093ngnoL093Nannochloropsis gaditana (N. gaditana B-31)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO27G00910NO27G00910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
rna9699rna9699-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide
rna9700rna9700-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
rna9699rna9699Nannochloropsis gaditana (N. gaditana B-31)mRNA
rna9700rna9700Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of rna9699

>rna9699-protein ID=rna9699-protein|Name=rna9699|organism=Nannochloropsis gaditana|type=polypeptide|length=377bp
MAPVQSTLIGALALAGSASAFVTPSFKLNAVQHARTNDVHMAVPMGINGF
GRIGRLVARIAVKDPQCNLVAINTGADAEYMAYQFKYDSVHGRFDGKVDV
EGDDIIIDGHRIKTTHTRKPEEIGWGKLGASYLCESTGAFLTKDTCQVHL
DGGAKKVVMSAPAKDDSQVIVMGVNEVDYKGADILSCASCTTNGLAPIVK
VVNDEFGIEEALMTTVHSFTATQMVVDGSSKKDWRGGRAASVNIIPSSTG
AAKAVTKVIPSLKGKLTGMAFRVPTPDVSVVDLTARLSKPTTYEAICAAI
KKASETTHKGVIGYTELPMVSQDFVSDPRSTIFDAGAGIALNPQFVKLVA
WYDNEWGYSCRVVDLIKMVAKQDGVSL
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protein sequence of rna9700

>rna9700-protein ID=rna9700-protein|Name=rna9700|organism=Nannochloropsis gaditana|type=polypeptide|length=405bp
MRILTALLFPLLACSATLTAYFSRSAFKMAPVQSTLIGALALAGSASAFV
TPSFKLNAVQHARTNDVHMAVPMGINGFGRIGRLVARIAVKDPQCNLVAI
NTGADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEE
IGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVM
GVNEVDYKGADILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTAT
QMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFR
VPTPDVSVVDLTARLSKPTTYEAICAAIKKASETTHKGVIGYTELPMVSQ
DFVSDPRSTIFDAGAGIALNPQFVKLVAWYDNEWGYSCRVVDLIKMVAKQ
DGVSL
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Synonyms
Publications