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Properties
| Property Name | Value |
|---|
| Product | glyceraldehyde-3-phosphate dehydrogenase |
| Orig transcript id | gnl|cribi|Naga_100081g16.755.mrna |
| Orig protein id | gnl|cribi|Naga_100081g16.755 |
| Gene | GapC1 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037255.1 | supercontig | KK037255.1:187666..189838 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9700 ID=rna9700|Name=rna9700|organism=Nannochloropsis gaditana|type=mRNA|length=2203bp
CCCTGATGTTGCTTTGCGTCTGACCAGACGGAGATCTTTGCTTTATCATA
TCTGAGCTGGTCTTGCATTTAATAGCAAAGTGGCGATGCGCATCACTTCT
TCATTGTTTCTCTCCCACGACCTTCTCTGGAAGTTCATCTTGTTCTTGCA
CAAGATCCTCCGTCTCCAAAAAGCGTTGTTCGGCTTGCGTGTCGGAAGCT
GCGCTTACAAGACCCAATCTTCTTGTTGTTAGAAGTATACTTTTCGAAAT
AATTCGCGGTGTATGGACGCACTCCCTGCATCTGAAAAGCTTGTTTGAAG
CCCGTCAACCTTCATGGTATCTTTTCACCCTTACGTTACCTGCCGAGCGC
AACGTTCACACGACGGCTTTGTGTGCTTACTTTTCACGCTCAGCATTTAA
GATGGCCCCCGTGCAATCCACCCTCATCGGTGCCCTGGCCCTGGCCGGCT
CCGCCTCCGCCTTCGTGACTCCCTCCTTCAAGCTCAACGCGGTGCAGCAC
GCACGCACCAACGACGTGCACATGGCGGTCCCCATGGGCATCAACGGCTT
CGGACGCATTGGTCGCTTGGTGGCTCGCATTGCCGTCAAGGACCCGCAGT
GCAACCTTGTCGCCATCAACACGGGCGCCGACGCCGAGTACATGGCATAC
CAGTTCAAGTACGACTCCGTGCACGGGCGCTTCGACGGGAAGGTGGACGT
GGAGGGCGACGACATCATCATCGACGGCCACCGCATCAAGACCACCCACA
CTCGCAAGCCCGAGGAGATCGGCTGGGGCAAGCTGGGCGCCAGCTACCTG
TGCGAGTCCACGGGGGCCTTTTTGACTAAGGACACGTGCCAGGTGCATCT
GGATGGCGGCGCCAAGAAGGTGGTCATGTCCGCGCCGGCCAAGGACGACT
CCCAGGTCATTGTCATGGGCGTGAACGAGGTCGACTACAAGGGTGCGGAT
ATCCTGTCCTGCGCCTCCTGCACGACCAACGGCCTTGCTCCCATCGTCAA
GGTTGTCAACGACGAGTTCGGCATCGAGGAGGCACTCATGACCACCGTGC
ACTCCTTCACGGCCACCCAGATGGTTGTGGACGGCTCCTCCAAGAAGGAC
TGGCGCGGCGGACGTGCGGCCTCGGTCAACATCATTCCCTCCTCCACCGG
CGCCGCCAAGGCCGTGACCAAGGTCATCCCCTCCCTTAAGGGCAAGCTCA
CCGGCATGGCCTTTCGCGTGCCCACGCCCGACGTGTCCGTGGTTGACCTC
ACGGCCCGTCTCTCCAAGCCCACAACCTACGAGGCCATCTGCGCGGCCAT
CAAGAAGGCCTCCGAGACCACCCACAAGGGCGTGATCGGCTACACGGAAC
TCCCCATGGTCTCCCAGGACTTTGTGTCCGACCCGCGCTCCACCATCTTC
GACGCAGGCGCCGGCATTGCTCTCAACCCGCAGTTTGTGAAGCTTGTGGC
CTGGTACGACAACGAGTGGGGGTACTCTTGCCGCGTCGTCGACCTGATCA
AGATGGTCGCCAAGCAAGACGGCGTCTCGCTCTAAGCTACTAAGCGCACG
CTGCCCGCCTGGCATTAGGATTGGGCAGCAGCATTTCAGCTCGGGCAATA
TGCTATCCTTATATATGTGCGGTGTAGCTGGTGTGTCAAGAGGATTCTAA
GCTTCAAGCCTTGAGGCCTCGGACGCGCACTGCGGCCCGCCCTTGTATTT
GTCCTGCTCAATAGTTCGCTTGGTCGTTTTATGCTGTCTGTCCCCGGCCT
GACAGTTCGTGATGTTGTCGTGAAAGAGCGTTTCTCTGTGTGGTTCCCGG
TGACGTGCGATTTTGTGGAAGGATGAGAAAACGTCTGATATCGAAGAGCA
GACGCACGAAGAAAATGAAAGATTTCTGATGGACAGCCAGGGGAGAGAAA
GCCATCGCCAAGGGCGTGGCGCTCGTCTTCCCCAAAGCTACTCCTGCGGC
TTCGTGATGTGTCCCGTAACGTGATATCTTCTTTTTTCAATCTCCGTTCT
GTGCAATTCATGCTCCTGACCTCAGGCATGGGATGCAAAAATCATCATAT
CCGTATCCGTTCACTGGCAAAACTTCCGACCGCAATACCTCGCAATTCAT
CTAACCGTCCTTCCCCGCAATATATGTATGGAAAAAATTTGAACTCTTCC
TTCACTGCGTGCATCATAGTGCTTGTAAAAGCCACCTCCGGACGAGACAA
GTC back to topprotein sequence of rna9700 >rna9700-protein ID=rna9700-protein|Name=rna9700|organism=Nannochloropsis gaditana|type=polypeptide|length=405bp
MRILTALLFPLLACSATLTAYFSRSAFKMAPVQSTLIGALALAGSASAFV
TPSFKLNAVQHARTNDVHMAVPMGINGFGRIGRLVARIAVKDPQCNLVAI
NTGADAEYMAYQFKYDSVHGRFDGKVDVEGDDIIIDGHRIKTTHTRKPEE
IGWGKLGASYLCESTGAFLTKDTCQVHLDGGAKKVVMSAPAKDDSQVIVM
GVNEVDYKGADILSCASCTTNGLAPIVKVVNDEFGIEEALMTTVHSFTAT
QMVVDGSSKKDWRGGRAASVNIIPSSTGAAKAVTKVIPSLKGKLTGMAFR
VPTPDVSVVDLTARLSKPTTYEAICAAIKKASETTHKGVIGYTELPMVSQ
DFVSDPRSTIFDAGAGIALNPQFVKLVAWYDNEWGYSCRVVDLIKMVAKQ
DGVSL back to topmRNA from alignment at KK037255.1:187666..189838+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9700 ID=rna9700|Name=rna9700|organism=Nannochloropsis gaditana|type=mRNA|length=2173bp|location=Sequence derived from alignment at KK037255.1:187666..189838+ (Nannochloropsis gaditana)
AGTGGCTGCTGCAACGCGACAGTAATGTCCAGATCTTTTATTCTTATTTT
ACCTTCCCCTCTTGCGTAAGAACGGGCTTGGCCCCTGTGTGCACAATACA
ACCTCTTCTCTGAGAAGCATTGTTTGTGTCAGATGAATTGGAAAAATGCA
TGCCGATCTTTGGCGGTCGATGCATTGGGCACagatgcaggaggaaagat
tgCTCTTGATGAAAGGAGATTGGGATTTGACACGGGCCAGACATTCTGAC
CCGACACGGTTACTCCTTGACTTGCACGCGCATTGCGATGCGTATTTTAA
CGGCACTGCtatttcctctccttgcctgctcTGCCACGTTGACAGCTTAC
TTTTCACGCTCAGCATTTAAGATGGCCCCCGTGCAATCCACCCTCATCGG
Tgccctggccctggccggctccgcctccgccttcgtgactccctccttca
agctcAACGCGGTGCAGCACGCACGCACCAACGACGTGCACATGGCGGTC
CCCATGGGCATCAACGGCTTCGGACGCATTGGTCGCTTGGTGGCTCGCAT
TGCCGTCAAGGACCCGCAGTGCAACCTTGTCGCCATCAACACGGGCGCCG
ACGCCGAGTACATGGCATACCAGTTCAAGTACGACTCCGTGCACGGGCGC
TTCGACGGgaaggtggacgtggagggcgacgacaTCATCATCGACGGCCA
CCGCATCAAGACCACCCACACTCGCAAGCCCGAGGAGATCGGCTGGGGCA
AGCTGGGCGCCAGCTACCTGTGCGAGTCCACGGGGGCCTTTTTGACTAAG
GACACGTGCCAGGTGCATCTGGATGGCGGCGCCAAGAAGGTGGTCATGTC
CGCGCCGGCCAAGGACGACTCCCAGGTCATTGTCATGGGCGTGAACGAGG
TCGACTACAAGGGTGCGGATATCCTgtcctgcgcctcctgcaCGACCAAC
GGCCTTGCTCCCATCGTCAAGGTTGTCAACGACGAGTTCGGCATCGAGGA
GGCACTCATGACCACCGTGCACTCCTTCACGGCCACCCAGATGGTTGTGG
ACGGCTCCTCCAAGAAGGACTGGCGCGGCGGACGTGCGGCCTCGGTCAAc
atcattccctcctccaccggcgccgccaaggccgtgACCAAggtcatccc
ctcccttaAGGGCAAGCTCACCGGCATGGCCTTTCGCGTGCCCACGCCCG
ACGTGTCCGTGGTTGACCTCACGGCCCGTCTCTCCAAGCCCACAACCTAC
GAGGCCATCTGCGCGGCCATCAAGAAGGCCTCCGAGACCACCCACAAGGG
CGTGATCGGCTACACGGAACTCCCCATGGTCTCCCAGGACTTTGTGTCCG
ACCCGCGCTCCACCATCTTCGACGCAGGCGCCGGCATTGCTCTCAACCCG
CAGTTTGTGAAGCTTGTGGCCTGGTACGACAACGAGTGGGGGTACTCTTG
CCGCGTCGTCGACCTGATCAAGATGGTCGCCAAGCAAGACGGCGTCTCGC
TCTAAGCTACTAAGCGCACGCTGCCCGCCTGGCATTAGGATTGGGCAGCA
GCATTTCAGCTCGGGCAATATGCTATCCTTATATATGTGCGGTGTAGCTG
GTGTGTCAAGAGGATTCTAAGCTTCAAGCCTTGAGGCCTCGGACGCGCAC
TGCGGCCCGCCCTTGTATTTGTCCTGCTCAATAGTTCGCTTGGTCGTTTT
ATGCTGTCTGTCCCCGGCCTGACAGTTCGTGATGTTGTCGTGAAAGAGCG
TTTCTCTGTGTGGTTCCCGGTGACGTGCGATTTTGTGGAAGGATGAGAAA
ACGTCTGATATCGAAGAGCAGACGCAcgaagaaaatgaaagatTTCTGAT
GGACAgccaggggagagaaagccaTCGCCAAGGGCGTGGCGCTCGTCTTC
CCCAAAGCTACTCCTGCGGCTTCGTGATGTGTCCCGTAACGTGATATCTT
CTTTTTTCAATCTCCGTTCTGTGCAATTCATGCTCCTGACCTCAGGCATG
GGATGCAAAAATCATCATATCCGTATCCGTTCACTGGCAAAACTTCCGAC
CGCAATACCTCGCAATTCATCTAaccgtccttccccgcaATATATGTATG
GAAAAAATTTGAACTCTTCCTTCACTGCGTGCATCATAGTGCTTGTAAAA
GCCACCTCCGGACGAGACAAGTC back to topCoding sequence (CDS) from alignment at KK037255.1:187666..189838+ >rna9700 ID=rna9700|Name=rna9700|organism=Nannochloropsis gaditana|type=CDS|length=1218bp|location=Sequence derived from alignment at KK037255.1:187666..189838+ (Nannochloropsis gaditana)
ATGCGTATTTTAACGGCACTGCtatttcctctccttgcctgctcTGCCAC
GTTGACAGCTTACTTTTCACGCTCAGCATTTAAGATGGCCCCCGTGCAAT
CCACCCTCATCGGTgccctggccctggccggctccgcctccgccttcgtg
actccctccttcaagctcAACGCGGTGCAGCACGCACGCACCAACGACGT
GCACATGGCGGTCCCCATGGGCATCAACGGCTTCGGACGCATTGGTCGCT
TGGTGGCTCGCATTGCCGTCAAGGACCCGCAGTGCAACCTTGTCGCCATC
AACACGGGCGCCGACGCCGAGTACATGGCATACCAGTTCAAGTACGACTC
CGTGCACGGGCGCTTCGACGGgaaggtggacgtggagggcgacgacaTCA
TCATCGACGGCCACCGCATCAAGACCACCCACACTCGCAAGCCCGAGGAG
ATCGGCTGGGGCAAGCTGGGCGCCAGCTACCTGTGCGAGTCCACGGGGGC
CTTTTTGACTAAGGACACGTGCCAGGTGCATCTGGATGGCGGCGCCAAGA
AGGTGGTCATGTCCGCGCCGGCCAAGGACGACTCCCAGGTCATTGTCATG
GGCGTGAACGAGGTCGACTACAAGGGTGCGGATATCCTgtcctgcgcctc
ctgcaCGACCAACGGCCTTGCTCCCATCGTCAAGGTTGTCAACGACGAGT
TCGGCATCGAGGAGGCACTCATGACCACCGTGCACTCCTTCACGGCCACC
CAGATGGTTGTGGACGGCTCCTCCAAGAAGGACTGGCGCGGCGGACGTGC
GGCCTCGGTCAAcatcattccctcctccaccggcgccgccaaggccgtgA
CCAAggtcatcccctcccttaAGGGCAAGCTCACCGGCATGGCCTTTCGC
GTGCCCACGCCCGACGTGTCCGTGGTTGACCTCACGGCCCGTCTCTCCAA
GCCCACAACCTACGAGGCCATCTGCGCGGCCATCAAGAAGGCCTCCGAGA
CCACCCACAAGGGCGTGATCGGCTACACGGAACTCCCCATGGTCTCCCAG
GACTTTGTGTCCGACCCGCGCTCCACCATCTTCGACGCAGGCGCCGGCAT
TGCTCTCAACCCGCAGTTTGTGAAGCTTGTGGCCTGGTACGACAACGAGT
GGGGGTACTCTTGCCGCGTCGTCGACCTGATCAAGATGGTCGCCAAGCAA
GACGGCGTCTCGCTCTAA back to top
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