NO30G01300, NO30G01300 (gene) Nannochloropsis oceanica

Overview
NameNO30G01300
Unique NameNO30G01300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2383
Alignment locationchr30:477518..479900 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:477518..479900 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO30G01300 vs. NCBI_GenBank
Match: EWM29176.1 (hypothetical protein Naga_100007g62 [Nannochloropsis gaditana])

HSP 1 Score: 135.2 bits (339), Expect = 5.300e-28
Identity = 83/215 (38.60%), Postives = 113/215 (52.56%), Query Frame = 0 
Query:   65 SIAILFLAHDGVANPSLWEAWRCA------------------------SDNHDLGLRLPSAWCRSSTVHALMQSLQAVLDQGPESIKTIYVVSGRDVPLQPPSLFFSTHHTNTEGAHYVIPPGRSIICKAQEKWQRTLKKKSLWPDPSPFEAAVRDSIVCHNTFLALSRAHALLLLAFPRAFPSHYKKLLAMGERRDLIPITCPEEWLVGTMLAL 256
            S+ ILFLAHDGV NP LWE WR +                        +  +DL LRL + WC SS VHA ++SLQAVL +G  S+  IY+VSG D+P+QPPS  F+T    TEG    + P RS+I     +    LK+ S W         +R S V H  +  L+R HA L++A+P       K+L  +G +  +    CP+EW++GT L L
Sbjct:   86 SVGILFLAHDGVTNPLLWEKWRASDKVFASRIRFFVFRNTKISHPSFFTTKYDLKLRLRTKWCSSSIVHATIKSLQAVL-EGDTSVGMIYIVSGYDIPIQPPSALFTTRSVITEGVFKNVVPFRSVIAFTPGE-DMDLKEASGW---GKRNEKLRQSAVSHVQWCGLTRGHARLIVAYP-----DLKQLFKLGNK--ISSACCPDEWVLGTALLL 288
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BLAST of NO30G01300 vs. NCBI_GenBank
Match: EWM20732.1 (hypothetical protein Naga_100261g6 [Nannochloropsis gaditana])

HSP 1 Score: 109.4 bits (272), Expect = 3.100e-20
Identity = 47/70 (67.14%), Postives = 61/70 (87.14%), Query Frame = 0 
Query:  112 MQSLQAVLDQGPESIKTIYVVSGRDVPLQPPSLFFSTHHTNTEGAHYVIPPGRSIICKAQEKWQRTLKKK 182
            M+SL+AVL+QGP+S++ +YVVSGRDVPLQPP++ FSTH T+TEG  Y+I PGRSI+CKA+ +WQR LK K
Sbjct:    1 MESLRAVLEQGPQSLQMVYVVSGRDVPLQPPAVLFSTHRTHTEGRPYLIHPGRSILCKAERRWQRALKSK 70
The following BLAST results are available for this feature:
BLAST of NO30G01300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29176.15.300e-2838.60hypothetical protein Naga_100007g62 [Nannochlorops... [more]
EWM20732.13.100e-2067.14hypothetical protein Naga_100261g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL072nonsL072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR098ngnoR098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009870NSK009870Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G01300.1NO30G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100261g6gene9674Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G01300.1NO30G01300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G01300 ID=NO30G01300|Name=NO30G01300|organism=Nannochloropsis oceanica|type=gene|length=2383bp
ATGGGTCTACAACGCCAGGCCGCCGCCGCCTCCTCCTCCTCCTGgtaagt
ggtgcgcttttttaccccccctccttttttctccttgtcctcagtaacca
tcttctctaatccgacccaatcacccaagcagCAGCAGCAGCAGCAGCAG
TGACAACAGCTGCAGGACCACGGGCAGCGCCAGCTTGCCGCAACATAGCA
TGCGTCGACGCAGCGGCAGCCTCTCCCCATCCCTCTCCTCCCTTGCAGCC
TCCCCTGCCTCCTTCCTCCCCTCCTCCTCCAGCATCGCCATCCTCTTTCT
CGCACACGACGGGGTCGCCAATCCGTCCTTGTGGGAAGCCTGGCGCTGTG
CTTCTGgtcagtcattcgcatcccgcatccacttcttcgtcttccgcaac
gagcgcctggccttccctccctgtcccttcacagATAATCACGACCTGGG
CCTGCGCCTGCCTTCTGCGTGGTGTCGCTCGTCCACCGTCCACGCCCTTA
TGCAGTCGCTCCAAGCTGTCTTGGACCAGGGCCCCGAGTCCATCAAGgta
tgctgccctccctccctccctccctccctccctccctctctcccttcttc
ccttacttcctctctatctcttgccctccctgccttgatccctctccccc
ttcctcctgaccatccttccttctcttggctacaaaccagttgatgtgtc
tatgtctgtctacagtcttacccttcttcccctccctccctctcttcctc
tctccctcgctccttcctttcaagACCATCTATGTCGTTTCTGGCCGCGA
TGTGCCCCTGCAGCCGCCCTCCCTCTTTTTCTCCACCCACCACACCAACA
CCGAGGGGGCACATTACGTCATCCCTCCCGGCCGCTCGATAATTTGCAAA
GCCCAAGAAAAATGGCAACGCACCCTCAAGAAGAAGgtacctcctgcctt
cccaccctccctctctccctggcctatcacaacgcgcacgctcagccccg
tttcctctccctccctccctccctccctcaattcctccctccctccctcc
ctccctcagTCCCTCTGGCCTGACCCTTCCCCCTTCGAGGCCGCTGTCCG
CGATTCCATCGTCTGCCACAACACCTTCCTGGCCCTCTCCCGTGCCCATG
CCCTCCTCCTCCTCGCTTTCCCTCGTGCCTTCCCCTCCCACTACAAGAAA
TTGCTGGCGATGGGTGAACGGgtacgcacgcagccccttcctccctccct
ccctccctccctccctccctcccttccctcatccgcctcgggcccgtcat
tatgacactcatatctctcatatctcacgtacttcccctccgataaatat
ctggtcctccctccctccctccctccctccctccagCGGGACCTGATCCC
CATCACCTGTCCGGAGGAGTGGCTCGTGGGCACCATGCTGGCCCTGGTGG
TCGGAGGGAGGATGGAGGAGGTCCTGAGGGAGGAAGGGAGGGAGGGAGGG
AGGGAGGGGGAGGTGGGGAGGAGATGGTCGGGGGGGAGTGCAGGCTCGGC
GTCGTCGGTGGGGACGGACGGGGAGGAGGAGGAGGAGGAGGAGGAGGAAG
AGGTGGAGGGCAGTTACGAGGAGGGTAGTGACGAGGAGGAGAAGGAGGAT
GGGAGGGAGGGAGGGAGAGAGGGAGGGAGAGAGGGAAGACAGAGTTTGTT
TTCGGCAGAGGAGGAGGGAGGAGGAGGAGTGATCGACTGGCCCTTGACCG
ACCAAAGCCGGGAGCGgtgagtgtgaggagcggagggaggtagggaggga
gggaaaaagattgttaaacgttcgacaaaatacaaagatagatagactcg
cgtactcattcttcgcacttcctcttcctcatccctccgtcgactctccc
tccctccgcccctccctcccctctctcctccagACTGGAAGATCCGTCCC
CACTTACGTGGACGTCCTTCGAGGGCGAGGCCAAAATTGTCTTTTATTCG
AGGCGAGAGACGCGTCTTTGGACCCTCAAGGCCGCCCTGGAGGAGGGACG
AGCCAATGGCCATCTCTTCTACCGGAAGGTGGGCAGGCTCGAGGGAGGGA
GGGAGGAAGAGGGGGAGTGGGAGGTGAGGAACCTGTgtgagttcttgttt
ggctctcaggcagggagaaagtggaatgagggagggaggaagggggaaag
ggagggaggaatggagggagggaagaagaggcggaggtaccatttgaggg
tgccgacgaagCTCTGCGTGGGTGGGTTATGTCCCTGGATGGGCGTGAAG
GAGGGAGGGGGGAGGAAGGGGGGGAGGAGGACATGTTGGCTCGGGCGAAA
CGGTTGGAGGCGTTGGCCAAGGGGCGACGCTGA
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protein sequence of NO30G01300.1

>NO30G01300.1-protein ID=NO30G01300.1-protein|Name=NO30G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=470bp
MGLQRQAAAASSSSCSSSSSSDNSCRTTGSASLPQHSMRRRSGSLSPSLS
SLAASPASFLPSSSSIAILFLAHDGVANPSLWEAWRCASDNHDLGLRLPS
AWCRSSTVHALMQSLQAVLDQGPESIKTIYVVSGRDVPLQPPSLFFSTHH
TNTEGAHYVIPPGRSIICKAQEKWQRTLKKKSLWPDPSPFEAAVRDSIVC
HNTFLALSRAHALLLLAFPRAFPSHYKKLLAMGERRDLIPITCPEEWLVG
TMLALVVGGRMEEVLREEGREGGREGEVGRRWSGGSAGSASSVGTDGEEE
EEEEEEEVEGSYEEGSDEEEKEDGREGGREGGREGRQSLFSAEEEGGGGV
IDWPLTDQSRERLEDPSPLTWTSFEGEAKIVFYSRRETRLWTLKAALEEG
RANGHLFYRKVGRLEGGREEEGEWEVRNLSLRGWVMSLDGREGGRGEEGG
EEDMLARAKRLEALAKGRR*
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Synonyms
Publications