NO30G01300.1, NO30G01300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G01300.1
Unique NameNO30G01300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1410
Alignment locationchr30:477518..479900 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:477518..479900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G01300.1 vs.
Match: EWM29176.1 (hypothetical protein Naga_100007g62 [Nannochloropsis gaditana])

HSP 1 Score: 131.0 bits (328), Expect = 1.000e-26
Identity = 88/248 (35.48%), Postives = 126/248 (50.81%), Query Frame = 0 
Query:   65 SIAILFLAHDGVANPSLWEAWRCA------------------------SDNHDLGLRLPSAWCRSSTVHALMQSLQAVLDQGPESIKTIYVVSGRDVPLQPPSLFFSTHHTNTEGAHYVIPPGRSIICKAQEKWQRTLKKKSLWPDPSPFEAAVRDSIVCHNTFLALSRAHALLLLAFPRAFPSHYKKLLAMGERRDLIPITCPEEWLVGTMLALVVGGRMEEVLREEGREGGREGEVGRRWSGGSAG 289
            S+ ILFLAHDGV NP LWE WR +                        +  +DL LRL + WC SS VHA ++SLQAVL +G  S+  IY+VSG D+P+QPPS  F+T    TEG    + P RS+I     +    LK+ S W         +R S V H  +  L+R HA L++A+P       K+L  +G +  +    CP+EW++GT L L +  R +    +  + G    + G+ +  G+ G
Sbjct:   86 SVGILFLAHDGVTNPLLWEKWRASDKVFASRIRFFVFRNTKISHPSFFTTKYDLKLRLRTKWCSSSIVHATIKSLQAVL-EGDTSVGMIYIVSGYDIPIQPPSALFTTRSVITEGVFKNVVPFRSVIAFTPGE-DMDLKEASGW---GKRNEKLRQSAVSHVQWCGLTRGHARLIVAYP-----DLKQLFKLGNK--ISSACCPDEWVLGTALLLQL--RCQATPTKANKCGTNGHDDGKEYWRGAEG 319
The following BLAST results are available for this feature:
BLAST of NO30G01300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29176.11.000e-2635.48hypothetical protein Naga_100007g62 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G01300NO30G01300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G01300.1NO30G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G01300.1.cds1NO30G01300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01300.1.cds2NO30G01300.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01300.1.cds3NO30G01300.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01300.1.cds4NO30G01300.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01300.1.cds5NO30G01300.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01300.1.cds6NO30G01300.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01300.1.cds7NO30G01300.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01300.1.cds8NO30G01300.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G01300.1 ID=NO30G01300.1|Name=NO30G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp
ATGGGTCTACAACGCCAGGCCGCCGCCGCCTCCTCCTCCTCCTGCAGCAG
CAGCAGCAGCAGTGACAACAGCTGCAGGACCACGGGCAGCGCCAGCTTGC
CGCAACATAGCATGCGTCGACGCAGCGGCAGCCTCTCCCCATCCCTCTCC
TCCCTTGCAGCCTCCCCTGCCTCCTTCCTCCCCTCCTCCTCCAGCATCGC
CATCCTCTTTCTCGCACACGACGGGGTCGCCAATCCGTCCTTGTGGGAAG
CCTGGCGCTGTGCTTCTGATAATCACGACCTGGGCCTGCGCCTGCCTTCT
GCGTGGTGTCGCTCGTCCACCGTCCACGCCCTTATGCAGTCGCTCCAAGC
TGTCTTGGACCAGGGCCCCGAGTCCATCAAGACCATCTATGTCGTTTCTG
GCCGCGATGTGCCCCTGCAGCCGCCCTCCCTCTTTTTCTCCACCCACCAC
ACCAACACCGAGGGGGCACATTACGTCATCCCTCCCGGCCGCTCGATAAT
TTGCAAAGCCCAAGAAAAATGGCAACGCACCCTCAAGAAGAAGTCCCTCT
GGCCTGACCCTTCCCCCTTCGAGGCCGCTGTCCGCGATTCCATCGTCTGC
CACAACACCTTCCTGGCCCTCTCCCGTGCCCATGCCCTCCTCCTCCTCGC
TTTCCCTCGTGCCTTCCCCTCCCACTACAAGAAATTGCTGGCGATGGGTG
AACGGCGGGACCTGATCCCCATCACCTGTCCGGAGGAGTGGCTCGTGGGC
ACCATGCTGGCCCTGGTGGTCGGAGGGAGGATGGAGGAGGTCCTGAGGGA
GGAAGGGAGGGAGGGAGGGAGGGAGGGGGAGGTGGGGAGGAGATGGTCGG
GGGGGAGTGCAGGCTCGGCGTCGTCGGTGGGGACGGACGGGGAGGAGGAG
GAGGAGGAGGAGGAGGAAGAGGTGGAGGGCAGTTACGAGGAGGGTAGTGA
CGAGGAGGAGAAGGAGGATGGGAGGGAGGGAGGGAGAGAGGGAGGGAGAG
AGGGAAGACAGAGTTTGTTTTCGGCAGAGGAGGAGGGAGGAGGAGGAGTG
ATCGACTGGCCCTTGACCGACCAAAGCCGGGAGCGACTGGAAGATCCGTC
CCCACTTACGTGGACGTCCTTCGAGGGCGAGGCCAAAATTGTCTTTTATT
CGAGGCGAGAGACGCGTCTTTGGACCCTCAAGGCCGCCCTGGAGGAGGGA
CGAGCCAATGGCCATCTCTTCTACCGGAAGGTGGGCAGGCTCGAGGGAGG
GAGGGAGGAAGAGGGGGAGTGGGAGGTGAGGAACCTGTCTCTGCGTGGGT
GGGTTATGTCCCTGGATGGGCGTGAAGGAGGGAGGGGGGAGGAAGGGGGG
GAGGAGGACATGTTGGCTCGGGCGAAACGGTTGGAGGCGTTGGCCAAGGG
GCGACGCTGA
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protein sequence of NO30G01300.1

>NO30G01300.1-protein ID=NO30G01300.1-protein|Name=NO30G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=470bp
MGLQRQAAAASSSSCSSSSSSDNSCRTTGSASLPQHSMRRRSGSLSPSLS
SLAASPASFLPSSSSIAILFLAHDGVANPSLWEAWRCASDNHDLGLRLPS
AWCRSSTVHALMQSLQAVLDQGPESIKTIYVVSGRDVPLQPPSLFFSTHH
TNTEGAHYVIPPGRSIICKAQEKWQRTLKKKSLWPDPSPFEAAVRDSIVC
HNTFLALSRAHALLLLAFPRAFPSHYKKLLAMGERRDLIPITCPEEWLVG
TMLALVVGGRMEEVLREEGREGGREGEVGRRWSGGSAGSASSVGTDGEEE
EEEEEEEVEGSYEEGSDEEEKEDGREGGREGGREGRQSLFSAEEEGGGGV
IDWPLTDQSRERLEDPSPLTWTSFEGEAKIVFYSRRETRLWTLKAALEEG
RANGHLFYRKVGRLEGGREEEGEWEVRNLSLRGWVMSLDGREGGRGEEGG
EEDMLARAKRLEALAKGRR*
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mRNA from alignment at chr30:477518..479900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G01300.1 ID=NO30G01300.1|Name=NO30G01300.1|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp|location=Sequence derived from alignment at chr30:477518..479900- (Nannochloropsis oceanica)
ATGGGTCTACAACGCCAGGCCGCCGCCGCCTCCTCCTCCTCCTGGTAAGT
GGTGCGCTTTTTTACCCCCCCTCCTTTTTTCTCCTTGTCCTCAGTAACCA
TCTTCTCTAATCCGACCCAATCACCCAAGCAGCAGCAGCAGCAGCAGCAG
TGACAACAGCTGCAGGACCACGGGCAGCGCCAGCTTGCCGCAACATAGCA
TGCGTCGACGCAGCGGCAGCCTCTCCCCATCCCTCTCCTCCCTTGCAGCC
TCCCCTGCCTCCTTCCTCCCCTCCTCCTCCAGCATCGCCATCCTCTTTCT
CGCACACGACGGGGTCGCCAATCCGTCCTTGTGGGAAGCCTGGCGCTGTG
CTTCTGGTCAGTCATTCGCATCCCGCATCCACTTCTTCGTCTTCCGCAAC
GAGCGCCTGGCCTTCCCTCCCTGTCCCTTCACAGATAATCACGACCTGGG
CCTGCGCCTGCCTTCTGCGTGGTGTCGCTCGTCCACCGTCCACGCCCTTA
TGCAGTCGCTCCAAGCTGTCTTGGACCAGGGCCCCGAGTCCATCAAGGTA
TGCTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTTCTTC
CCTTACTTCCTCTCTATCTCTTGCCCTCCCTGCCTTGATCCCTCTCCCCC
TTCCTCCTGACCATCCTTCCTTCTCTTGGCTACAAACCAGTTGATGTGTC
TATGTCTGTCTACAGTCTTACCCTTCTTCCCCTCCCTCCCTCTCTTCCTC
TCTCCCTCGCTCCTTCCTTTCAAGACCATCTATGTCGTTTCTGGCCGCGA
TGTGCCCCTGCAGCCGCCCTCCCTCTTTTTCTCCACCCACCACACCAACA
CCGAGGGGGCACATTACGTCATCCCTCCCGGCCGCTCGATAATTTGCAAA
GCCCAAGAAAAATGGCAACGCACCCTCAAGAAGAAGGTACCTCCTGCCTT
CCCACCCTCCCTCTCTCCCTGGCCTATCACAACGCGCACGCTCAGCCCCG
TTTCCTCTCCCTCCCTCCCTCCCTCCCTCAATTCCTCCCTCCCTCCCTCC
CTCCCTCAGTCCCTCTGGCCTGACCCTTCCCCCTTCGAGGCCGCTGTCCG
CGATTCCATCGTCTGCCACAACACCTTCCTGGCCCTCTCCCGTGCCCATG
CCCTCCTCCTCCTCGCTTTCCCTCGTGCCTTCCCCTCCCACTACAAGAAA
TTGCTGGCGATGGGTGAACGGGTACGCACGCAGCCCCTTCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTTCCCTCATCCGCCTCGGGCCCGTCAT
TATGACACTCATATCTCTCATATCTCACGTACTTCCCCTCCGATAAATAT
CTGGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGCGGGACCTGATCCC
CATCACCTGTCCGGAGGAGTGGCTCGTGGGCACCATGCTGGCCCTGGTGG
TCGGAGGGAGGATGGAGGAGGTCCTGAGGGAGGAAGGGAGGGAGGGAGGG
AGGGAGGGGGAGGTGGGGAGGAGATGGTCGGGGGGGAGTGCAGGCTCGGC
GTCGTCGGTGGGGACGGACGGGGAGGAGGAGGAGGAGGAGGAGGAGGAAG
AGGTGGAGGGCAGTTACGAGGAGGGTAGTGACGAGGAGGAGAAGGAGGAT
GGGAGGGAGGGAGGGAGAGAGGGAGGGAGAGAGGGAAGACAGAGTTTGTT
TTCGGCAGAGGAGGAGGGAGGAGGAGGAGTGATCGACTGGCCCTTGACCG
ACCAAAGCCGGGAGCGGTGAGTGTGAGGAGCGGAGGGAGGTAGGGAGGGA
GGGAAAAAGATTGTTAAACGTTCGACAAAATACAAAGATAGATAGACTCG
CGTACTCATTCTTCGCACTTCCTCTTCCTCATCCCTCCGTCGACTCTCCC
TCCCTCCGCCCCTCCCTCCCCTCTCTCCTCCAGACTGGAAGATCCGTCCC
CACTTACGTGGACGTCCTTCGAGGGCGAGGCCAAAATTGTCTTTTATTCG
AGGCGAGAGACGCGTCTTTGGACCCTCAAGGCCGCCCTGGAGGAGGGACG
AGCCAATGGCCATCTCTTCTACCGGAAGGTGGGCAGGCTCGAGGGAGGGA
GGGAGGAAGAGGGGGAGTGGGAGGTGAGGAACCTGTGTGAGTTCTTGTTT
GGCTCTCAGGCAGGGAGAAAGTGGAATGAGGGAGGGAGGAAGGGGGAAAG
GGAGGGAGGAATGGAGGGAGGGAAGAAGAGGCGGAGGTACCATTTGAGGG
TGCCGACGAAGCTCTGCGTGGGTGGGTTATGTCCCTGGATGGGCGTGAAG
GAGGGAGGGGGGAGGAAGGGGGGGAGGAGGACATGTTGGCTCGGGCGAAA
CGGTTGGAGGCGTTGGCCAAGGGGCGACGCTGA
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Coding sequence (CDS) from alignment at chr30:477518..479900-

>NO30G01300.1 ID=NO30G01300.1|Name=NO30G01300.1|organism=Nannochloropsis oceanica|type=CDS|length=1410bp|location=Sequence derived from alignment at chr30:477518..479900- (Nannochloropsis oceanica)
ATGGGTCTACAACGCCAGGCCGCCGCCGCCTCCTCCTCCTCCTGCAGCAG
CAGCAGCAGCAGTGACAACAGCTGCAGGACCACGGGCAGCGCCAGCTTGC
CGCAACATAGCATGCGTCGACGCAGCGGCAGCCTCTCCCCATCCCTCTCC
TCCCTTGCAGCCTCCCCTGCCTCCTTCCTCCCCTCCTCCTCCAGCATCGC
CATCCTCTTTCTCGCACACGACGGGGTCGCCAATCCGTCCTTGTGGGAAG
CCTGGCGCTGTGCTTCTGATAATCACGACCTGGGCCTGCGCCTGCCTTCT
GCGTGGTGTCGCTCGTCCACCGTCCACGCCCTTATGCAGTCGCTCCAAGC
TGTCTTGGACCAGGGCCCCGAGTCCATCAAGACCATCTATGTCGTTTCTG
GCCGCGATGTGCCCCTGCAGCCGCCCTCCCTCTTTTTCTCCACCCACCAC
ACCAACACCGAGGGGGCACATTACGTCATCCCTCCCGGCCGCTCGATAAT
TTGCAAAGCCCAAGAAAAATGGCAACGCACCCTCAAGAAGAAGTCCCTCT
GGCCTGACCCTTCCCCCTTCGAGGCCGCTGTCCGCGATTCCATCGTCTGC
CACAACACCTTCCTGGCCCTCTCCCGTGCCCATGCCCTCCTCCTCCTCGC
TTTCCCTCGTGCCTTCCCCTCCCACTACAAGAAATTGCTGGCGATGGGTG
AACGGCGGGACCTGATCCCCATCACCTGTCCGGAGGAGTGGCTCGTGGGC
ACCATGCTGGCCCTGGTGGTCGGAGGGAGGATGGAGGAGGTCCTGAGGGA
GGAAGGGAGGGAGGGAGGGAGGGAGGGGGAGGTGGGGAGGAGATGGTCGG
GGGGGAGTGCAGGCTCGGCGTCGTCGGTGGGGACGGACGGGGAGGAGGAG
GAGGAGGAGGAGGAGGAAGAGGTGGAGGGCAGTTACGAGGAGGGTAGTGA
CGAGGAGGAGAAGGAGGATGGGAGGGAGGGAGGGAGAGAGGGAGGGAGAG
AGGGAAGACAGAGTTTGTTTTCGGCAGAGGAGGAGGGAGGAGGAGGAGTG
ATCGACTGGCCCTTGACCGACCAAAGCCGGGAGCGACTGGAAGATCCGTC
CCCACTTACGTGGACGTCCTTCGAGGGCGAGGCCAAAATTGTCTTTTATT
CGAGGCGAGAGACGCGTCTTTGGACCCTCAAGGCCGCCCTGGAGGAGGGA
CGAGCCAATGGCCATCTCTTCTACCGGAAGGTGGGCAGGCTCGAGGGAGG
GAGGGAGGAAGAGGGGGAGTGGGAGGTGAGGAACCTGTCTCTGCGTGGGT
GGGTTATGTCCCTGGATGGGCGTGAAGGAGGGAGGGGGGAGGAAGGGGGG
GAGGAGGACATGTTGGCTCGGGCGAAACGGTTGGAGGCGTTGGCCAAGGG
GCGACGCTGA
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Synonyms
Publications