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Properties
| Property Name | Value |
|---|
| Description | Atp-dependent rna helicase a |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr30 | genome | chr30:469263..476731 + |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029060 | PIN_domain-like |
Homology
BLAST of NO30G01290 vs. NCBI_GenBank
Match: EWM20730.1 (atp-dependent rna helicase a [Nannochloropsis gaditana]) HSP 1 Score: 119.0 bits (297), Expect = 9.100e-23 Identity = 67/139 (48.20%), Postives = 88/139 (63.31%), Query Frame = 0
Query: 407 RLLELNVMGKYSMQWLSLKSGERVVYPKSSILRNAAATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMFAVPTEINKYLSKEQRPHYSAARSSLLPFPEPLIAVLVAVFSRNETIRFRRLRPEAQDAIEELLTWKGEE 546
RLLEL+V+GKY+MQW LK RV +PK+SILRNAA + V++AV +I+K+LS+EQ P YSA R++LLPFPE L+AVL+AVFSRNE I FR LR +A++ I E+L + EE
Sbjct: 964 RLLELDVIGKYAMQWKCLKMDVRVGFPKASILRNAAVS-----------CTALSKLPSSSSPAPGPSVLYAVTPQISKFLSREQIPFYSAPRATLLPFPESLLAVLIAVFSRNEVISFRHLRSDAEEVIAEMLEGEAEE 1091
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO30G01290 ID=NO30G01290|Name=NO30G01290|organism=Nannochloropsis oceanica|type=gene|length=7469bp
ACAGATACTTTTGAATCACGTGATAAGTCACCAAGAACAAGTTCCACTAG
CAACCGCAGTAGCAGTAGCGGCAGTAGTAGTAGTAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCGGGGGTAGGGAATAACGCTGCCGCAGCAGC
AGCGGGTGTAGGGGATAGCACCGCAATTGCCATTCCAAACAACCTAGGAA
AGAGGAAGCAAGACGTTGCGTTAAATAGAGTGTAGATAGAGAGGCGCAGG
GAGAAAGAAACAGAGGTCTGAGGGAGGTGGGAAACAAGAAGAGTAGGATA
GCGAAGGAGAGGAGGGAAAGGGAGAGGAAGCGGGAAGTGTGGGTGGGTGG
TTGTTGTGGGTTTCAAGAGACAAAGAACAAGAGGCAGAGCCTAGCAAAGG
CCAAGATAGATAGATAGATAGGTAGATAGATACAGAAAGGTACCCGGCGT
TCTAACGGCTGCGTGAGGAGGAGGGAGAAGAGGGAGAAAAGGGAGAGGGG
GGCTCACACAGGGTGGTGTGAGGAGATTAAAAAGAAGAGCAAGAGGGGTT
GAGATCTGTCAAGAGGATAGAGGAAGAGAGGAGCGGAGATCGAGGAAGAG
TAAGAGGGCAGAGGAGGAGAGGAGCGGAGAGTGAGGAAGAGTAAGAGAAA
AGACAAGAAGACGAAAAGGAGGGAGAGGGAAAGGGAGCAATTCTGAACGG
ATTCGAAGCCAAATAGAAAAGAAGAGAGAGAGGCGGAACACGCTAGGTCT
AGAGCGCACGACGGAGGGGAAGGAGGAAGGAAAAGAAAGGAAGGAGGAAG
GGAAGGAAAGGAAAGAAAATAAGGGAGAAAGGAGAGAGTAGACACAGGAT
CCAAAAATGGGTGTAAAGGGCTTGCTGGCCTTCCTCCAACGCCGCATCCA
ATGGGACGATGAGCGCCGCGCCTCAGTGGGGGAGTACGgtaagtacgacc
tccctccctccctccttcgctccctccctccccatcatctccaccccctc
cagcccgtcattctgactctattctccctatcatcttacctcccttctac
ttccccaccaaaaattatcttttccgatccttcccacccacccctccctt
cctctttccctccctcagAATACGGGTGGGAGCCCCTCGCGGGCAAGTCC
CTTCTTGTGGATGGCAATGCCGTCATCATGTGGCTCGCCGAGCGTGCCTT
TGAGGGGAAGGCGGGACGGAAGAAGGGGGGGAGGAAGGGGGACGGTAACG
GGAAGCGGTGCGCGCTGTGGATGGGTGGGTATGAATGgtaatgatcgagg
gagggagggaaggagggagggagggagggagggagggagggagggaggga
agggatggtgctctctgcattgtgctcgccgtatcgcccgaacgcacccg
ccctccctccctccctcccgtagGTACTACTCGGAAGCCACGGCCTTCTT
GCGGGCCTTTCAGATGCAAGACGTGAAGCTCACCTTCATTTTTGACAACC
GCTTGGGGgtagggagggagggagggaggggtgtagtgattgtgggaaag
gagggatgaggggaaggacaacagagcactcattgtttctattcgtaccg
cacagACATTACTGGAGGAGGGGAGAGAGGAAGGGGGGGAAGGAGACGTG
AAGGAGGGCGCCGATTTGGACCGTCTCTTGAGGgtaggagggagggaggg
agggagggagggagggagggagggagggagggagtataataatgagagga
ggatcacactgatttgagccaccgtcacattcatccctccctttctccct
cccttcctccctccctccctccctccctcagCGGCGCGACAATGTGGTGG
GGGTGCAAGAGAAGCTGCTTGGGCACCCTCGAGCGGGAGGGAGCGTCTTC
CTTCACTCCCTCCCTCGGCCCCTCCTTCTCTCGGCGCAGTTCAAGCGGGC
GCTGAGGGATGTGGGAGGCATGGAGACGGTGAAGATCTATGgtgagggag
ggagggagggagggagggagggagggaggggggcggattctggggaaagt
ggaagggagctgagatatgggcgtgtcagatagatgggcttgaggaggcg
gacatgtgatgaggagggagggagggagggcgggaggggtattccgttct
tactcgttgcttgttattgttgatgtacagGCGAGGCCGACAGCGTGCTG
GCATGGGGGGTAGCGGCGCCTGACTCGGAGgtacctccctccctccctcc
ctccctccctccctccctccctcctttctttccttcctttctttcgcgtc
tcattctccctccttccctccctccctccctccctcccttcctcagTACT
ACGCCGTGTTGTCGGGGGATAGTGACTTCCTCGTTTACTCCAACTGCCGA
CTCATTCCCTTGGAGACGTTGAGGCTCGATGTCATGAAGgtgagggagtg
agggagggagggagggagggagggtaggggtagacgtatctccacacaca
aggatcaaagccatcagtttctcaccatcccctccctcccctcctctctc
ctcccctccctctccagGCGCGCGTCTTGACCCCTGCCGAGGTGGCTCGT
CTCTTGTCCCTCCCCCCTGAGAGGCAGGGGAGGCGAGACACCTCGACCGC
ACCTTCCTTCCATCCCTCTCTCCTGCCTGCCTTTGCCATGGTGGTGGGGA
ATGATCACACCCTACAGCATCCTTTGCGTCCCCTCCTCCTCCGGCACCTC
GGGCTGTTTGACAGgcacgccctcccttcctccctccctccctccctccc
tccctccctccctcccttattttctttcccacctttcctccctttctgcc
ttcaattgccctttctttcttttcttcctcctcccctcctttctttctta
ctccccccccccctctactctttcctccctcttcgccccccccccccctc
gtgcttctttcccactttcgatttggaagcattagacgcgcttaacaggc
agcggaaaaggaagaagggagggagggaaggggggcgggagggaggaagg
ggagacatgcagtttttacatccacctcgcctcttccacttacttgcctc
ctctctccctccctttcttcctccctccagCCCTCACATCACCGACATCC
TCCCCCTCTTCCTCTCGTCCGCCCCACCCCCCTATTCCTCCCTCCCTCCC
TCGCCCTCCCCCTCACCCTCCCCCGCGGCCAAAACTTTGGACATCATCGA
AAGCTTCCTCCGGCGTCATCCCGCCTTTGCCCGTGTCTGGAGGCAGACGA
TGgtacgccctccctccctccctccctcgtcctgctgtttctcgtaccca
atgcccgcgcctgagtttatcctcccttcctccctccttctttccctccc
tccctccttccctctctccctccagGCCTCCTACAACCGCGAAGACAAAA
TCCTCCCTTCCTCCCTCCCTCCCTCGGCCTCGTCCTCCTTCCGCGCCACG
GTCGCAAAGAGCCAGGAGCAAGCCCGAGGCGTGCTGGAAGAGAAAGgtca
gccgagggagggagggaaggatggagggagcgaggaagggtgggaagaag
ggagggaggggctatctcagttggctggttgtcagtgactcactttgact
ctttccccccctcccttcatcgatgccgatcttgtcggctgggttgtcta
cgtctctgacactcaccatacctccnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnngagggagggagggaggggcagcggc
ggtaggaatgggcagtcgaagacgaacgtagCCGAAAAGACGCGTCTGCT
GGAGCTGAACGTGATGGgtagggaagggagggagggagggacttaaggca
accacacatccggttggttccttttccatccacccccttcctcctttccc
ccccctcctcccccctcccttccctatccagGCAAATACTCGATGCAGTG
GCTTTCCCTCAAGAGCGGCGAGAGAGTCGTCTATCCCAAGTCCTCCATCT
TACGGAACGCAGgtagggagggagggagggagggagggaaggttgtaggt
gctgcgaaggaattcatgcgtgcggaaggaaggggaggggagggggaggc
agggaaggagggagggatcacgcacacaagcgattgttctgaccgtcccc
gacctcttgacaccccaacagCTGCTACCACCACGGGTGCTTCTTCAACC
TCTGGCTCGTTTTCCCCCTCTTCTCCCTCCTTCCCTCCCTCCCTCCCTCC
CTCCCCCCCGTCCTCGGTCATGTTTGCCGTCCCGACCGAAATCAACAAGT
ATCTGTCCAAGGgtaagtccctccctccctccctccctccctcccttccg
tcgccatgttcatctttccttcttccttccacactcctcccttccttctt
ccctccctccctccctccctccctccctccctccctccctccctatttcc
cgccctagAACAACGCCCTCATTACTCGGCTGCACGCTCCTCCCTCCTCC
CCTTTCCCGAGCCTCTCATCGCCGTCCTGGTCGCTGTTTTCTCTCGgtac
gcacccaccctccctccctccctccctccctccctcttcatcacatccat
ctcctcacgccctccgtcattccgacacccacctctcccatcctcctacc
tactttcacaaactccctccctccctccctccctcccttcctcccccccc
tctctccccctccctcagCAACGAAACGATTCGCTTCCGGCGCCTGCGAC
CGGAGGCCCAGGACGCGATCGAGGAGCTCCTTACGTGGAAAGGCGAAGAG
gtagggagggagggaggaagggagggagagaaggggatgggaaatagatg
aaggaaaggagggaaggagggagggaggaggtgggaacgggacgatcaag
acgtaggctcattcactcttttccacacggaaatgaggagacctccactt
accctctctccctccctccctccctccctccctccctccctccctccctc
cctccctccctcacttctttccttccttcttcccttccttctttccttcc
ttcctccagGCCCTGACGGAGGAAGAGGCTAGGCAGCTGCGGGATGCGCT
TCCTTCCTCTGACGAGTATTTTTCCCTGACTGTGGGAGGAGGGGCGGGCG
CTGGATGGCTCTCTACCCCCTGCAAATTCACCAAGCACATAGTCAAGTCC
ATCAATGACATCCGCCGgtacgtccctccctccctccctccctctcttcc
tccctccctccctctcttcctccctccctccctctctgtcttcccgctcg
tggacgcggaaaggggagagcaaaaacttacgtaagcaggcaagagggaa
aacaccgccggcgttctctccacatcatccctccctccctccctccctcc
ctccttcccttcaatcctctttcctccttgtgtgtccttctacctcttct
aagaaatgatcttttctccattttctcatcccctctctccctcccttcct
ccctcccttcctctctccctccctccctccccccacagTGGGATCTCACT
GGCCGTCGCCGGCCAGAGCGGCACCAGTCGAGGTGCCAAGGGCGAGCAGT
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCACCACGCGCGCCGG
AAGACGGTCGGTCGTGCTCCCCCCACTCTATTGAAAGTGTCCCGCGCCGC
CATCAAGgtaggcttgagccctccctctcccccgcccgactccctccctt
cgtcctcccctccatcttttcctctcccttcgaatcccactcccgtgcaa
cttttcttactctgacagcaaggcttcctccctccctccctccctccctc
tctccctccctccctccctccctccctccctccctcgtccagGGTCTATT
TTCGCTTCAACGCACCTCCGCCTTGTCCTCCTCCCTTCCCTCTACCTCCT
CCTCCTCCTTCTTCTGCCCTTGGGACGTCCTCCGGGAGCTTCCCACgtgc
gaagacgtcttcggagaggagggggaggaaggggggaggagggccagcgc
atgagaggtgagcaccggaagcaaaggccggggggcgaattgtctcatta
gactcacacaccctccctccctccctccctccctccctccctccctccca
ctctttcttgccacacttcagGCGATGTTCTCCCCCCCCTCCTCGTCATC
CGTCCCTCCTCCCCCCCCGCCCTCCCTCCCTTCCTCCCTCTGGCGCGGCT
CCCCCTCCTCCTGCGCTCGTGCCCTGGGAGAGGGAAGGGCGGAAGAAACG
GTTGGCGAGGGAGAAGGAGGCCCGGAGGCTGCTGAAGGGAAAAGGGAAGG
AGAACACAGAGAACGAGGAAGAGGAAAGGGAGGAGGAGCAGAGGAGGAGG
AGGAGGAGGAAGGAGAAGGAGGAAAGGAGCAAGGCCTGGCAGCTGTCCAT
GGAGGAGCCCTACGAATCGGAGGTAGACGAGAACGACGGGGAAGAAGAGG
TGGAAGACGCAGAGACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGGAGCAGTACGACAAACATCTCTCTCATCATCATCATCATCATTAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGTCACCGAGGTCGAAGGAG
AGGAGGGGGACGAGGAGGAGGAGGAGGAAGAGCTTATCATCGTCGAGCGA
ACCCCATTCCTCCCCCTTCCTCCCTCCTCCTCCTCCCCCCTCCCCCTCCT
CCTCGCCGCCTTTGTCGCGCATCAGCCCCTCGGCCTGAGCACACGAGAGA
CTCTCGCGGGCCACGTTGCCTCCCTCGGCTACCCCCCTCCCCCCCTGTCG
GACCACCAGCTCTGGCACGAGATCACCCACACACCCCTCCTCTTCACAAA
CCCGCCCTCCCTTCCAACCTCCCAGGGCGTAGGGGGGCAAAGCGGAGGCG
AGGAGGGAGGGGAAGAAGGCGCGGAAGGCGCGGGCTGGCACTACTACACC
CTCAGCCCCTCCCTCCTGACCTTGCTTCAAGGTGCATCTGTCGCGACACT
GCCCCCGGGGGCGAGGGCGCTGATGCACGTACTCGATTTCGTGTACAAGA
GTGCGCCCCTTCCTCTGTCCCTACCTCGCCTCGTGTCCCTCCTTGCTTTG
GTGCTGCAACGGGAAACTGTTGAGGCGGCCTTGGGGGAGGGAGGGAGGGA
GGAAGGAAGGGAGGAGTGGGTACAGCGGGCGGCGATGGCCATGCCGTTGA
TGAGAGTTATGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAAGGGAGGGAG
GAGGGGAGGGCGGGAGGGAGGAGGAAAAAGGTGTGGATGGTGTCTTTGGC
CGGCGATGGAGGTGGGTGA back to topprotein sequence of NO30G01290.1 >NO30G01290.1-protein ID=NO30G01290.1-protein|Name=NO30G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1088bp
MGVKGLLAFLQRRIQWDDERRASVGEYEYGWEPLAGKSLLVDGNAVIMWL
AERAFEGKAGRKKGGRKGDGNGKRCALWMGGYEWYYSEATAFLRAFQMQD
VKLTFIFDNRLGTLLEEGREEGGEGDVKEGADLDRLLRRRDNVVGVQEKL
LGHPRAGGSVFLHSLPRPLLLSAQFKRALRDVGGMETVKIYGEADSVLAW
GVAAPDSEYYAVLSGDSDFLVYSNCRLIPLETLRLDVMKARVLTPAEVAR
LLSLPPERQGRRDTSTAPSFHPSLLPAFAMVVGNDHTLQHPLRPLLLRHL
GLFDSPHITDILPLFLSSAPPPYSSLPPSPSPSPSPAAKTLDIIESFLRR
HPAFARVWRQTMASYNREDKILPSSLPPSASSSFRATVAKSQEQARGVLE
EKAEKTRLLELNVMGKYSMQWLSLKSGERVVYPKSSILRNAAATTTGASS
TSGSFSPSSPSFPPSLPPSPPSSVMFAVPTEINKYLSKEQRPHYSAARSS
LLPFPEPLIAVLVAVFSRNETIRFRRLRPEAQDAIEELLTWKGEEALTEE
EARQLRDALPSSDEYFSLTVGGGAGAGWLSTPCKFTKHIVKSINDIRRGI
SLAVAGQSGTSRGAKGEQSSLPPSLPPSLPHHARRKTVGRAPPTLLKVSR
AAIKGLFSLQRTSALSSSLPSTSSSSFFCPWDVLRELPTRCSPPPPRHPS
LLPPRPPSLPPSGAAPPPPALVPWEREGRKKRLAREKEARRLLKGKGKEN
TENEEEEREEEQRRRRRRKEKEERSKAWQLSMEEPYESEVDENDGEEEVE
DAETSAAAAAAAAAAAGAVRQTSLSSSSSSLAAAAAAAAAAAVTEVEGEE
GDEEEEEEELIIVERTPFLPLPPSSSSPLPLLLAAFVAHQPLGLSTRETL
AGHVASLGYPPPPLSDHQLWHEITHTPLLFTNPPSLPTSQGVGGQSGGEE
GGEEGAEGAGWHYYTLSPSLLTLLQGASVATLPPGARALMHVLDFVYKSA
PLPLSLPRLVSLLALVLQRETVEAALGEGGREEGREEWVQRAAMAMPLMR
VMEEEEEEEEGEGREEGRAGGRRKKVWMVSLAGDGGG* back to top
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