NO30G01170, NO30G01170 (gene) Nannochloropsis oceanica

Overview
NameNO30G01170
Unique NameNO30G01170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2510
Alignment locationchr30:426474..428983 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:426474..428983 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO30G01170 vs. NCBI_GenBank
Match: XP_009519289.1 (hypothetical protein PHYSODRAFT_482901 [Phytophthora sojae] >EGZ24001.1 hypothetical protein PHYSODRAFT_482901 [Phytophthora sojae])

HSP 1 Score: 69.3 bits (168), Expect = 3.100e-8
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 0 
Query:   94 VRVHGDARAPTIFNGLPEDGAITAHVYCSLEDFLYIYSGQATIRDAMALGIKGKIKVSNFNLRECGRFAAAFDLRSEKWEAFYHAREGERE 185
            V +  D    T+ N    D   T  V  S++DFL+IYSG+A+  D + L   G++ +S +  R   +FA +FD  SEKW +FY  R+ + E
Sbjct:   36 VEISDDRHVATVKNASAADVRPTCEVTISMDDFLWIYSGKASSSDMVKLFYAGRVAISGYAFRTVSKFAQSFDFSSEKWRSFYAWRKAQDE 126
[Close]
BLAST of NO30G01170 vs. NCBI_GenBank
Match: XP_002901755.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY57145.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 65.9 bits (159), Expect = 3.400e-7
Identity = 33/91 (36.26%), Postives = 48/91 (52.75%), Query Frame = 0 
Query:   94 VRVHGDARAPTIFNGLPEDGAITAHVYCSLEDFLYIYSGQATIRDAMALGIKGKIKVSNFNLRECGRFAAAFDLRSEKWEAFYHAREGERE 185
            V ++   +  T  N    D   T  V  S++DFL+IYSG+AT  D   L   G++ +S +  R   +FA +FD  SEKW +FY  R  + E
Sbjct:   36 VEINDTRQVATRKNASAGDVRPTCEVTISMDDFLWIYSGKATSSDMAKLFYAGRVSISGYAFRTVSKFAQSFDFSSEKWRSFYAWRRAQDE 126
[Close]
BLAST of NO30G01170 vs. NCBI_GenBank
Match: POM58273.1 (hypothetical protein PHPALM_37102 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 65.5 bits (158), Expect = 4.500e-7
Identity = 31/91 (34.07%), Postives = 50/91 (54.95%), Query Frame = 0 
Query:   94 VRVHGDARAPTIFNGLPEDGAITAHVYCSLEDFLYIYSGQATIRDAMALGIKGKIKVSNFNLRECGRFAAAFDLRSEKWEAFYHAREGERE 185
            V +  + +  T  N    D   T  V  +++DFL+IYSG+A+  D + L   G++ +S +  R   +FA +FD  SEKW +FY  R+ + E
Sbjct:   36 VEISDERQVDTRKNASARDVRPTCEVTITMDDFLWIYSGKASSSDMVKLFYAGRVSISGYAFRTVSKFAQSFDFSSEKWRSFYAWRKAQDE 126
[Close]
BLAST of NO30G01170 vs. NCBI_GenBank
Match: POM60755.1 (hypothetical protein PHPALM_30342, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 65.5 bits (158), Expect = 4.500e-7
Identity = 31/91 (34.07%), Postives = 50/91 (54.95%), Query Frame = 0 
Query:   94 VRVHGDARAPTIFNGLPEDGAITAHVYCSLEDFLYIYSGQATIRDAMALGIKGKIKVSNFNLRECGRFAAAFDLRSEKWEAFYHAREGERE 185
            V +  + +  T  N    D   T  V  +++DFL+IYSG+A+  D + L   G++ +S +  R   +FA +FD  SEKW +FY  R+ + E
Sbjct:   64 VEISDEQQVATRKNASARDVRPTCEVTITMDDFLWIYSGKASSSDMVKLFYAGRVSISGYAFRTVSKFAQSFDFSSEKWRSFYAWRKAQDE 154
[Close]
BLAST of NO30G01170 vs. NCBI_GenBank
Match: ETI50053.1 (hypothetical protein F443_06302 [Phytophthora parasitica P1569] >ETM49689.1 hypothetical protein L914_06112 [Phytophthora parasitica])

HSP 1 Score: 64.7 bits (156), Expect = 7.700e-7
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 0 
Query:   94 VRVHGDARAPTIFNGLPEDGAITAHVYCSLEDFLYIYSGQATIRDAMALGIKGKIKVSNFNLRECGRFAAAFDLRSEKWEAFYHAREGERE 185
            V ++   +  T  N    D   T  V  S++DFL+IYSG+AT  D   L   G++ +S +  R   +FA +FD  SEKW +FY  ++ + E
Sbjct:   74 VEINDTRQVYTRKNASARDKRPTCEVTISMDDFLWIYSGKATSSDLAKLFYAGRVAISGYAFRTVSKFAQSFDFSSEKWRSFYAWQKAQDE 164
[Close]
BLAST of NO30G01170 vs. NCBI_GenBank
Match: ETK89953.1 (hypothetical protein L915_06176 [Phytophthora parasitica] >ETL43351.1 hypothetical protein L916_06114 [Phytophthora parasitica] >ETP19824.1 hypothetical protein F441_06309 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 64.7 bits (156), Expect = 7.700e-7
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 0 
Query:   94 VRVHGDARAPTIFNGLPEDGAITAHVYCSLEDFLYIYSGQATIRDAMALGIKGKIKVSNFNLRECGRFAAAFDLRSEKWEAFYHAREGERE 185
            V ++   +  T  N    D   T  V  S++DFL+IYSG+AT  D   L   G++ +S +  R   +FA +FD  SEKW +FY  ++ + E
Sbjct:   74 VEINDTRQVYTRKNASARDERPTCEVTISMDDFLWIYSGKATSSDLAKLFYAGRVAISGYAFRTVSKFAQSFDFSSEKWRSFYAWQKAQDE 164
[Close]
BLAST of NO30G01170 vs. NCBI_GenBank
Match: XP_008891742.1 (hypothetical protein PPTG_02420 [Phytophthora parasitica INRA-310] >ETL96535.1 hypothetical protein L917_05992 [Phytophthora parasitica] >ETN22495.1 hypothetical protein PPTG_02420 [Phytophthora parasitica INRA-310] >ETO78755.1 hypothetical protein F444_06365 [Phytophthora parasitica P1976] >ETP47736.1 hypothetical protein F442_06345 [Phytophthora parasitica P10297] >KUF80825.1 hypothetical protein AM587_10016077 [Phytophthora nicotianae] >KUF86653.1 hypothetical protein AM588_10001214 [Phytophthora nicotianae])

HSP 1 Score: 64.7 bits (156), Expect = 7.700e-7
Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 0 
Query:   94 VRVHGDARAPTIFNGLPEDGAITAHVYCSLEDFLYIYSGQATIRDAMALGIKGKIKVSNFNLRECGRFAAAFDLRSEKWEAFYHAREGERE 185
            V ++   +  T  N    D   T  V  S++DFL+IYSG+AT  D   L   G++ +S +  R   +FA +FD  SEKW +FY  ++ + E
Sbjct:   74 VEINDTRQVYTRKNASARDERPTCEVTISMDDFLWIYSGKATSSDLAKLFYAGRVAISGYAFRTVSKFAQSFDFSSEKWRSFYAWQKAQDE 164
The following BLAST results are available for this feature:
BLAST of NO30G01170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
XP_009519289.13.100e-836.26hypothetical protein PHYSODRAFT_482901 [Phytophtho... [more]
XP_002901755.13.400e-736.26conserved hypothetical protein [Phytophthora infes... [more]
POM58273.14.500e-734.07hypothetical protein PHPALM_37102 [Phytophthora pa... [more]
POM60755.14.500e-734.07hypothetical protein PHPALM_30342, partial [Phytop... [more]
ETI50053.17.700e-735.16hypothetical protein F443_06302 [Phytophthora para... [more]
ETK89953.17.700e-735.16hypothetical protein L915_06176 [Phytophthora para... [more]
XP_008891742.17.700e-735.16hypothetical protein PPTG_02420 [Phytophthora para... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR073ncniR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR098ngnoR098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G01170.1NO30G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO30G01170.2NO30G01170.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|342551gene_10233Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G01170.1NO30G01170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO30G01170.2NO30G01170.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G01170 ID=NO30G01170|Name=NO30G01170|organism=Nannochloropsis oceanica|type=gene|length=2510bp
GCTTACTGGTCGTCGAATGACCTTTTTTTGCCTTTTCGTCGAGTTTCCAC
GTTGCGACCACTCTCACCATGCCCACCGACCCTTGGATGTAATCCTTCTG
CTGCTGGCGGGCCTATGCGTCGGCCGGTCATTTGGCAGCCAGACTTTTGG
CGTCCTACTCGCTTCTTGCGCCGGACACGGCTGCTTTCTTCTGCTTATTT
TTTGCCCTCACACACCACATATTTTACGCTCACACACATTTAACAGGCTC
CACCATCACGGCTGCGCGCAAGTAAGACAACATAACCACCATGGCCCTGC
TCAGTAAGGAGCACACGCAAAAACAAAGGCACGAAGCTCCAGCCGACAGC
TCGAGAAGACCACCACCATTCCAGCAGCAGAAGCAGAAGCAGCAGCAGCA
GCAGCAGAAGCAGCAGCAGCAGCTGCAACAGCCGCCGCAGCGGCAGCAAG
ATGCCGACATCAGCTGTAATAAGAACAGTAGCAGTGGAGGAATGGCAGGA
ATGACGCTGGAAGAGCAGCATGCCGAGAGAATAGAGCGGGTACGTAGGTG
GAAGGACAAAGAACGATTTCGTCATGCGGTGATGATGAGCGCTGAGATGC
CCTCCCTTCTCGCCCCTCTCTCCCCTTTCTCCTCGGCATTTCTACCATTG
TGTGATTTCCGTAAATCATGCAAAGCTTGTTTTACCGAGACACGCAAGCT
ACTTGTTAATCCATCCTCCCTGTCTTTCCTCCCCCATCCTCCCTCCCCCT
CTCCTTCCCCTTCTCCCTCCCTGCTCCCAGATCTACGAAGTCATGGACTT
CTTCCTGTTTAGTATCCGCCCCGACAACACCTACAAGGGTACCCTCTCCT
TCCATTTCCACACTCCTTCTTCCCTTCCCTCTTCGTCGTCGTCCTCCTCC
TTGGACGAGAAGCAGCAGCAGCAACAGCAGCAGCGGCATTACTACCATCA
TCACCACCCTGAGGAGGAGCACCAGCAGCCTGCCAGCATATATAGCACCC
CACCACGCCGAGGACGAAGGCGGGAGGAAGGAGGAAAGGGAGGGCGGGAG
GGAGGACCGCTGGTCCTGACGGTGCGGGTGCATGGAGATGCTCGCGCTCC
CACCATCTTTAACGGCTTGCCCGAAGACGGTGCGATAACCGCGCATGTGT
ATTGCAGCCTGGAAGATTTTCTCTATATTTATTCAGgtaagctgattgtt
tcatatttatatatagagatagttgatttgtatacgtacgtatagatatt
gtatatatatataacataattttgtaattaagtacagtaaagtcaaaaat
actattccccccccccaaccactgattcatcatctcaaataattttatat
ataactgcaataatactaaatcaaagtcaaaaacactatttccccacccg
cccaccacttattcacagGCCAGGCCACCATCCGAGACGCGATGGCCCTA
GGCATAAAAGGTAAAATTAAAGTCAGCAATTTTAATCTGAGGGAATGCGG
TCGTTTCGCTGCTGCTTTTGACCTCCGGAGCGAGAAATGGGAAGCCTTCT
ATCACGCAAGGGAGGGAGAAAGGGAGGGAGGGAGGGAAGGGACGATAGAA
TGTAGGGGGAGAGAAGACTTGGGGGGTATGCTGAAGCGGCATCTGAGCTC
GTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCCCGCCACCCTCTCCTCCT
CCTCGTCCTCCCTGCCTCCCTCCCTTTCTTCCTCCAATTTTCTCACCGGG
GAATGGGCCGGTCTCTCTGCACTCGACTCCCGGCACTCCCTCCTCCTCCA
TGCCCCTTCCACACCCTCCACCTTCCCGCCCTCCCTCCCTTCCTCCCTCC
TAACCGTCCTTCACCAAACATCCCACGAGCGTGTGCTCCTCATGCAAAAA
GGGAAAAACCAAGACCTACACAACTATCTCCCATGGAGAGAGGGAGAAAG
GCGGGAGGGACAAACACACAGCCACAAAAGTACCTTCCTTGGAGGAAGGG
AAGGAGGGGGGGAGGAGGTTGCATCTGCTATAGCAGCGTCTTTGAGGAGG
ACCCTAGTAAAGAGGAAGGAGATGTGGTGGGAAGGGAGGAGGAGGGAGGG
AGGGAGGGAGGGGTGGGTATGTGAGATGGACTTCAGTGATTGGTGGAACC
ATTCGGCGTCGATGGGGGGCGTGAGAGAGGGAGGGAAGGAGCGATTGAGG
GAGGGAATGAGTGAGGGCCGGTCACGGGGGATCACGCCGGGGGGAAGTAG
GCGGTGAGGGGGGAAAAGAAAAAGCACGACGTAACAGAAAACAGTTTTGA
AAGGATGCATGTGCGTGATTCGATGAGTAAGAAAGGAAGGTAGGGAGAGT
GAGGGGAAATGAGGGGGCAAAGGCGGAGTTTTGAGTGTAGAGGGGATGAA
GAAGAGGGAAGAGAAGACTCGTATGAATAAAGACTTTGTAGAGGCAATTG
ACATAGAATGGGATAGGAAAAATAGACTGATAAAGGAAATACCGAGGGGA
CACAACAACT
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protein sequence of NO30G01170.1

>NO30G01170.1-protein ID=NO30G01170.1-protein|Name=NO30G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp
MALLSKEHTQKQRHEAPADSSRRPPPFQQQKQKQQQQQQKQQQQLQQPPQ
RQQDADISCNKNSSSGGMAGMTLEEQHAERIERIYEVMDFFLFSIRPDNT
YKGTLSFHFHTPSSLPSSSSSSSLDEKQQQQQQQRHYYHHHHPEEEHQQP
ASIYSTPPRRGRRREEGGKGGREGGPLVLTVRVHGDARAPTIFNGLPEDG
AITAHVYCSLEDFLYIYSGQATIRDAMALGIKGKIKVSNFNLRECGRFAA
AFDLRSEKWEAFYHAREGEREGGREGTIECRGREDLGGMLKRHLSSSSLP
SSLPPSPATLSSSSSSLPPSLSSSNFLTGEWAGLSALDSRHSLLLHAPST
PSTFPPSLPSSLLTVLHQTSHERVLLMQKGKNQDLHNYLPWREGERREGQ
THSHKSTFLGGREGGGEEVASAIAASLRRTLVKRKEMWWEGRRREGGREG
WVCEMDFSDWWNHSASMGGVREGGKERLREGMSEGRSRGITPGGSRR*
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protein sequence of NO30G01170.2

>NO30G01170.2-protein ID=NO30G01170.2-protein|Name=NO30G01170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MDFFLFSIRPDNTYKGTLSFHFHTPSSLPSSSSSSSLDEKQQQQQQQRHY
YHHHHPEEEHQQPASIYSTPPRRGRRREEGGKGGREGGPLVLTVRVHGDA
RAPTIFNGLPEDGAITAHVYCSLEDFLYIYSGQATIRDAMALGIKGKIKV
SNFNLRECGRFAAAFDLRSEKWEAFYHAREGEREGGREGTIECRGREDLG
GMLKRHLSSSSLPSSLPPSPATLSSSSSSLPPSLSSSNFLTGEWAGLSAL
DSRHSLLLHAPSTPSTFPPSLPSSLLTVLHQTSHERVLLMQKGKNQDLHN
YLPWREGERREGQTHSHKSTFLGGREGGGEEVASAIAASLRRTLVKRKEM
WWEGRRREGGREGWVCEMDFSDWWNHSASMGGVREGGKERLREGMSEGRS
RGITPGGSRR*
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Synonyms
Publications