NO30G01170.2, NO30G01170.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G01170.2
Unique NameNO30G01170.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2278
Alignment locationchr30:426474..428983 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:426474..428983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G01170.2 vs.
Match: XP_009519289.1 (hypothetical protein PHYSODRAFT_482901 [Phytophthora sojae]; EGZ24001.1 hypothetical protein PHYSODRAFT_482901 [Phytophthora sojae])

HSP 1 Score: 69.3 bits (168), Expect = 3.100e-8
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 0 
Query:   94 VRVHGDARAPTIFNGLPEDGAITAHVYCSLEDFLYIYSGQATIRDAMALGIKGKIKVSNFNLRECGRFAAAFDLRSEKWEAFYHAREGERE 185
            V +  D    T+ N    D   T  V  S++DFL+IYSG+A+  D + L   G++ +S +  R   +FA +FD  SEKW +FY  R+ + E
Sbjct:   36 VEISDDRHVATVKNASAADVRPTCEVTISMDDFLWIYSGKASSSDMVKLFYAGRVAISGYAFRTVSKFAQSFDFSSEKWRSFYAWRKAQDE 126
The following BLAST results are available for this feature:
BLAST of NO30G01170.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009519289.13.100e-836.26hypothetical protein PHYSODRAFT_482901 [Phytophtho... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G01170NO30G01170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G01170.2NO30G01170.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G01170.2.cds1NO30G01170.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G01170.2.cds2NO30G01170.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G01170.2 ID=NO30G01170.2|Name=NO30G01170.2|organism=Nannochloropsis oceanica|type=mRNA|length=2278bp
GCTTACTGGTCGTCGAATGACCTTTTTTTGCCTTTTCGTCGAGTTTCCAC
GTTGCGACCACTCTCACCATGCCCACCGACCCTTGGATGTAATCCTTCTG
CTGCTGGCGGGCCTATGCGTCGGCCGGTCATTTGGCAGCCAGACTTTTGG
CGTCCTACTCGCTTCTTGCGCCGGACACGGCTGCTTTCTTCTGCTTATTT
TTTGCCCTCACACACCACATATTTTACGCTCACACACATTTAACAGGCTC
CACCATCACGGCTGCGCGCAAGTAAGACAACATAACCACCATGGCCCTGC
TCAGTAAGGAGCACACGCAAAAACAAAGGCACGAAGCTCCAGCCGACAGC
TCGAGAAGACCACCACCATTCCAGCAGCAGAAGCAGAAGCAGCAGCAGCA
GCAGCAGAAGCAGCAGCAGCAGCTGCAACAGCCGCCGCAGCGGCAGCAAG
ATGCCGACATCAGCTGTAATAAGAACAGTAGCAGTGGAGGAATGGCAGGA
ATGACGCTGGAAGAGCAGCATGCCGAGAGAATAGAGCGGGTACGTAGGTG
GAAGGACAAAGAACGATTTCGTCATGCGGTGATGATGAGCGCTGAGATGC
CCTCCCTTCTCGCCCCTCTCTCCCCTTTCTCCTCGGCATTTCTACCATTG
TGTGATTTCCGTAAATCATGCAAAGCTTGTTTTACCGAGACACGCAAGCT
ACTTGTTAATCCATCCTCCCTGTCTTTCCTCCCCCATCCTCCCTCCCCCT
CTCCTTCCCCTTCTCCCTCCCTGCTCCCAGATCTACGAAGTCATGGACTT
CTTCCTGTTTAGTATCCGCCCCGACAACACCTACAAGGGTACCCTCTCCT
TCCATTTCCACACTCCTTCTTCCCTTCCCTCTTCGTCGTCGTCCTCCTCC
TTGGACGAGAAGCAGCAGCAGCAACAGCAGCAGCGGCATTACTACCATCA
TCACCACCCTGAGGAGGAGCACCAGCAGCCTGCCAGCATATATAGCACCC
CACCACGCCGAGGACGAAGGCGGGAGGAAGGAGGAAAGGGAGGGCGGGAG
GGAGGACCGCTGGTCCTGACGGTGCGGGTGCATGGAGATGCTCGCGCTCC
CACCATCTTTAACGGCTTGCCCGAAGACGGTGCGATAACCGCGCATGTGT
ATTGCAGCCTGGAAGATTTTCTCTATATTTATTCAGGCCAGGCCACCATC
CGAGACGCGATGGCCCTAGGCATAAAAGGTAAAATTAAAGTCAGCAATTT
TAATCTGAGGGAATGCGGTCGTTTCGCTGCTGCTTTTGACCTCCGGAGCG
AGAAATGGGAAGCCTTCTATCACGCAAGGGAGGGAGAAAGGGAGGGAGGG
AGGGAAGGGACGATAGAATGTAGGGGGAGAGAAGACTTGGGGGGTATGCT
GAAGCGGCATCTGAGCTCGTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCC
CCGCCACCCTCTCCTCCTCCTCGTCCTCCCTGCCTCCCTCCCTTTCTTCC
TCCAATTTTCTCACCGGGGAATGGGCCGGTCTCTCTGCACTCGACTCCCG
GCACTCCCTCCTCCTCCATGCCCCTTCCACACCCTCCACCTTCCCGCCCT
CCCTCCCTTCCTCCCTCCTAACCGTCCTTCACCAAACATCCCACGAGCGT
GTGCTCCTCATGCAAAAAGGGAAAAACCAAGACCTACACAACTATCTCCC
ATGGAGAGAGGGAGAAAGGCGGGAGGGACAAACACACAGCCACAAAAGTA
CCTTCCTTGGAGGAAGGGAAGGAGGGGGGGAGGAGGTTGCATCTGCTATA
GCAGCGTCTTTGAGGAGGACCCTAGTAAAGAGGAAGGAGATGTGGTGGGA
AGGGAGGAGGAGGGAGGGAGGGAGGGAGGGGTGGGTATGTGAGATGGACT
TCAGTGATTGGTGGAACCATTCGGCGTCGATGGGGGGCGTGAGAGAGGGA
GGGAAGGAGCGATTGAGGGAGGGAATGAGTGAGGGCCGGTCACGGGGGAT
CACGCCGGGGGGAAGTAGGCGGTGAGGGGGGAAAAGAAAAAGCACGACGT
AACAGAAAACAGTTTTGAAAGGATGCATGTGCGTGATTCGATGAGTAAGA
AAGGAAGGTAGGGAGAGTGAGGGGAAATGAGGGGGCAAAGGCGGAGTTTT
GAGTGTAGAGGGGATGAAGAAGAGGGAAGAGAAGACTCGTATGAATAAAG
ACTTTGTAGAGGCAATTGACATAGAATGGGATAGGAAAAATAGACTGATA
AAGGAAATACCGAGGGGACACAACAACT
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protein sequence of NO30G01170.2

>NO30G01170.2-protein ID=NO30G01170.2-protein|Name=NO30G01170.2|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MDFFLFSIRPDNTYKGTLSFHFHTPSSLPSSSSSSSLDEKQQQQQQQRHY
YHHHHPEEEHQQPASIYSTPPRRGRRREEGGKGGREGGPLVLTVRVHGDA
RAPTIFNGLPEDGAITAHVYCSLEDFLYIYSGQATIRDAMALGIKGKIKV
SNFNLRECGRFAAAFDLRSEKWEAFYHAREGEREGGREGTIECRGREDLG
GMLKRHLSSSSLPSSLPPSPATLSSSSSSLPPSLSSSNFLTGEWAGLSAL
DSRHSLLLHAPSTPSTFPPSLPSSLLTVLHQTSHERVLLMQKGKNQDLHN
YLPWREGERREGQTHSHKSTFLGGREGGGEEVASAIAASLRRTLVKRKEM
WWEGRRREGGREGWVCEMDFSDWWNHSASMGGVREGGKERLREGMSEGRS
RGITPGGSRR*
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mRNA from alignment at chr30:426474..428983+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G01170.2 ID=NO30G01170.2|Name=NO30G01170.2|organism=Nannochloropsis oceanica|type=mRNA|length=2510bp|location=Sequence derived from alignment at chr30:426474..428983+ (Nannochloropsis oceanica)
GCTTACTGGTCGTCGAATGACCTTTTTTTGCCTTTTCGTCGAGTTTCCAC
GTTGCGACCACTCTCACCATGCCCACCGACCCTTGGATGTAATCCTTCTG
CTGCTGGCGGGCCTATGCGTCGGCCGGTCATTTGGCAGCCAGACTTTTGG
CGTCCTACTCGCTTCTTGCGCCGGACACGGCTGCTTTCTTCTGCTTATTT
TTTGCCCTCACACACCACATATTTTACGCTCACACACATTTAACAGGCTC
CACCATCACGGCTGCGCGCAAGTAAGACAACATAACCACCATGGCCCTGC
TCAGTAAGGAGCACACGCAAAAACAAAGGCACGAAGCTCCAGCCGACAGC
TCGAGAAGACCACCACCATTCCAGCAGCAGAAGCAGAAGCAGCAGCAGCA
GCAGCAGAAGCAGCAGCAGCAGCTGCAACAGCCGCCGCAGCGGCAGCAAG
ATGCCGACATCAGCTGTAATAAGAACAGTAGCAGTGGAGGAATGGCAGGA
ATGACGCTGGAAGAGCAGCATGCCGAGAGAATAGAGCGGGTACGTAGGTG
GAAGGACAAAGAACGATTTCGTCATGCGGTGATGATGAGCGCTGAGATGC
CCTCCCTTCTCGCCCCTCTCTCCCCTTTCTCCTCGGCATTTCTACCATTG
TGTGATTTCCGTAAATCATGCAAAGCTTGTTTTACCGAGACACGCAAGCT
ACTTGTTAATCCATCCTCCCTGTCTTTCCTCCCCCATCCTCCCTCCCCCT
CTCCTTCCCCTTCTCCCTCCCTGCTCCCAGATCTACGAAGTCATGGACTT
CTTCCTGTTTAGTATCCGCCCCGACAACACCTACAAGGGTACCCTCTCCT
TCCATTTCCACACTCCTTCTTCCCTTCCCTCTTCGTCGTCGTCCTCCTCC
TTGGACGAGAAGCAGCAGCAGCAACAGCAGCAGCGGCATTACTACCATCA
TCACCACCCTGAGGAGGAGCACCAGCAGCCTGCCAGCATATATAGCACCC
CACCACGCCGAGGACGAAGGCGGGAGGAAGGAGGAAAGGGAGGGCGGGAG
GGAGGACCGCTGGTCCTGACGGTGCGGGTGCATGGAGATGCTCGCGCTCC
CACCATCTTTAACGGCTTGCCCGAAGACGGTGCGATAACCGCGCATGTGT
ATTGCAGCCTGGAAGATTTTCTCTATATTTATTCAGGTAAGCTGATTGTT
TCATATTTATATATAGAGATAGTTGATTTGTATACGTACGTATAGATATT
GTATATATATATAACATAATTTTGTAATTAAGTACAGTAAAGTCAAAAAT
ACTATTCCCCCCCCCCAACCACTGATTCATCATCTCAAATAATTTTATAT
ATAACTGCAATAATACTAAATCAAAGTCAAAAACACTATTTCCCCACCCG
CCCACCACTTATTCACAGGCCAGGCCACCATCCGAGACGCGATGGCCCTA
GGCATAAAAGGTAAAATTAAAGTCAGCAATTTTAATCTGAGGGAATGCGG
TCGTTTCGCTGCTGCTTTTGACCTCCGGAGCGAGAAATGGGAAGCCTTCT
ATCACGCAAGGGAGGGAGAAAGGGAGGGAGGGAGGGAAGGGACGATAGAA
TGTAGGGGGAGAGAAGACTTGGGGGGTATGCTGAAGCGGCATCTGAGCTC
GTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCCCGCCACCCTCTCCTCCT
CCTCGTCCTCCCTGCCTCCCTCCCTTTCTTCCTCCAATTTTCTCACCGGG
GAATGGGCCGGTCTCTCTGCACTCGACTCCCGGCACTCCCTCCTCCTCCA
TGCCCCTTCCACACCCTCCACCTTCCCGCCCTCCCTCCCTTCCTCCCTCC
TAACCGTCCTTCACCAAACATCCCACGAGCGTGTGCTCCTCATGCAAAAA
GGGAAAAACCAAGACCTACACAACTATCTCCCATGGAGAGAGGGAGAAAG
GCGGGAGGGACAAACACACAGCCACAAAAGTACCTTCCTTGGAGGAAGGG
AAGGAGGGGGGGAGGAGGTTGCATCTGCTATAGCAGCGTCTTTGAGGAGG
ACCCTAGTAAAGAGGAAGGAGATGTGGTGGGAAGGGAGGAGGAGGGAGGG
AGGGAGGGAGGGGTGGGTATGTGAGATGGACTTCAGTGATTGGTGGAACC
ATTCGGCGTCGATGGGGGGCGTGAGAGAGGGAGGGAAGGAGCGATTGAGG
GAGGGAATGAGTGAGGGCCGGTCACGGGGGATCACGCCGGGGGGAAGTAG
GCGGTGAGGGGGGAAAAGAAAAAGCACGACGTAACAGAAAACAGTTTTGA
AAGGATGCATGTGCGTGATTCGATGAGTAAGAAAGGAAGGTAGGGAGAGT
GAGGGGAAATGAGGGGGCAAAGGCGGAGTTTTGAGTGTAGAGGGGATGAA
GAAGAGGGAAGAGAAGACTCGTATGAATAAAGACTTTGTAGAGGCAATTG
ACATAGAATGGGATAGGAAAAATAGACTGATAAAGGAAATACCGAGGGGA
CACAACAACT
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Coding sequence (CDS) from alignment at chr30:426474..428983+

>NO30G01170.2 ID=NO30G01170.2|Name=NO30G01170.2|organism=Nannochloropsis oceanica|type=CDS|length=1233bp|location=Sequence derived from alignment at chr30:426474..428983+ (Nannochloropsis oceanica)
ATGGACTTCTTCCTGTTTAGTATCCGCCCCGACAACACCTACAAGGGTAC
CCTCTCCTTCCATTTCCACACTCCTTCTTCCCTTCCCTCTTCGTCGTCGT
CCTCCTCCTTGGACGAGAAGCAGCAGCAGCAACAGCAGCAGCGGCATTAC
TACCATCATCACCACCCTGAGGAGGAGCACCAGCAGCCTGCCAGCATATA
TAGCACCCCACCACGCCGAGGACGAAGGCGGGAGGAAGGAGGAAAGGGAG
GGCGGGAGGGAGGACCGCTGGTCCTGACGGTGCGGGTGCATGGAGATGCT
CGCGCTCCCACCATCTTTAACGGCTTGCCCGAAGACGGTGCGATAACCGC
GCATGTGTATTGCAGCCTGGAAGATTTTCTCTATATTTATTCAGGCCAGG
CCACCATCCGAGACGCGATGGCCCTAGGCATAAAAGGTAAAATTAAAGTC
AGCAATTTTAATCTGAGGGAATGCGGTCGTTTCGCTGCTGCTTTTGACCT
CCGGAGCGAGAAATGGGAAGCCTTCTATCACGCAAGGGAGGGAGAAAGGG
AGGGAGGGAGGGAAGGGACGATAGAATGTAGGGGGAGAGAAGACTTGGGG
GGTATGCTGAAGCGGCATCTGAGCTCGTCCTCCCTCCCTTCCTCCCTCCC
TCCCTCCCCCGCCACCCTCTCCTCCTCCTCGTCCTCCCTGCCTCCCTCCC
TTTCTTCCTCCAATTTTCTCACCGGGGAATGGGCCGGTCTCTCTGCACTC
GACTCCCGGCACTCCCTCCTCCTCCATGCCCCTTCCACACCCTCCACCTT
CCCGCCCTCCCTCCCTTCCTCCCTCCTAACCGTCCTTCACCAAACATCCC
ACGAGCGTGTGCTCCTCATGCAAAAAGGGAAAAACCAAGACCTACACAAC
TATCTCCCATGGAGAGAGGGAGAAAGGCGGGAGGGACAAACACACAGCCA
CAAAAGTACCTTCCTTGGAGGAAGGGAAGGAGGGGGGGAGGAGGTTGCAT
CTGCTATAGCAGCGTCTTTGAGGAGGACCCTAGTAAAGAGGAAGGAGATG
TGGTGGGAAGGGAGGAGGAGGGAGGGAGGGAGGGAGGGGTGGGTATGTGA
GATGGACTTCAGTGATTGGTGGAACCATTCGGCGTCGATGGGGGGCGTGA
GAGAGGGAGGGAAGGAGCGATTGAGGGAGGGAATGAGTGAGGGCCGGTCA
CGGGGGATCACGCCGGGGGGAAGTAGGCGGTGA
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Synonyms
Publications