NO30G01070, NO30G01070 (gene) Nannochloropsis oceanica

Overview
NameNO30G01070
Unique NameNO30G01070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2762
Alignment locationchr30:393740..396501 +

Link to JBrowse

Properties
Property NameValue
DescriptionTransducin family protein/WD-40 repeat family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:393740..396501 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
Homology
BLAST of NO30G01070 vs. NCBI_GenBank
Match: XP_021879677.1 (WD40-repeat-containing domain protein [Lobosporangium transversale] >ORZ11362.1 WD40-repeat-containing domain protein [Lobosporangium transversale])

HSP 1 Score: 205.3 bits (521), Expect = 3.600e-49
Identity = 106/293 (36.18%), Postives = 171/293 (58.36%), Query Frame = 0
Query:   73 HRRKVTCLKFNRSGSLLATGAADGSLRIYATVSTPQGLTALSSSTASTLDLRGHEKGLSSLGWNPASDTQLATCGYDRTVRLWDARHKGHETHKVTTAGSHAVNVNLAWSPNGQNLAVSNVHDQISFFDVRRFSSAEGCKRMSYKYEVHDFSWSPAGNHWVVCGAMRNGTGWLEVYTYPRQDSVFTTEAHTSTCLALSLDPTHQHLALGSADGLVSIWGLEELLPLRTMDRFNTAVSSLDFSYDGRWLAVGSEDSSSIDVTEVASGKQLALLKTEGGVNALAWHPKACLLAWS 366
            H+  V  + +N  G  LA+G+ D + R++A   T        +   S+ +LRGH   +  L W+P     LAT   D+TVR+WDAR      HK+ T G    N+N++WSP+GQ++AV N  D ISF D R F      K + ++ EV++ SW+PAG+ ++    +  G G ++V++YP  + V+  EAHT+ C  L  DP  ++LA GSAD LV++W LE+ + +RT  + +  + ++ FS+DG ++A  SED  +ID++ V +G+ +  +     +N +AWHP   LLA++
Sbjct:   27 HKANVHTVGWNCDGRKLASGSVDKTARVWAPERT--------ADPRSSQELRGHTDSVDQLRWDPTHPDHLATASCDKTVRIWDAR-SAKSIHKIDTTGQ---NINISWSPDGQSIAVGNKEDLISFIDTRTFKVQ---KEVPFRVEVNEISWNPAGDLFL----LTTGQGSIKVFSYPAMEEVYALEAHTANCYCLEFDPRGRYLATGSADALVNLWDLEDYICVRTFGQLHWPIRTISFSFDGEFIASASED-FAIDISHVETGESVHTVTCFAAMNTVAWHPSKYLLAYA 299          
BLAST of NO30G01070 vs. NCBI_GenBank
Match: KFH70471.1 (hypothetical protein MVEG_03321 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 200.7 bits (509), Expect = 8.800e-48
Identity = 109/293 (37.20%), Postives = 165/293 (56.31%), Query Frame = 0
Query:   73 HRRKVTCLKFNRSGSLLATGAADGSLRIYATVSTPQGLTALSSSTASTLDLRGHEKGLSSLGWNPASDTQLATCGYDRTVRLWDARHKGHETHKVTTAGSHAVNVNLAWSPNGQNLAVSNVHDQISFFDVRRFSSAEGCKRMSYKYEVHDFSWSPAGNHWVVCGAMRNGTGWLEVYTYPRQDSVFTTEAHTSTCLALSLDPTHQHLALGSADGLVSIWGLEELLPLRTMDRFNTAVSSLDFSYDGRWLAVGSEDSSSIDVTEVASGKQLALLKTEGGVNALAWHPKACLLAWS 366
            H+  V  + +N  G  LA+G+ D + RI+    TP+     +S    + +LRGH   +  L W+P     LAT   DRTVR+WDAR  G   H + T G    N+N++WSP+GQN+AV N  D IS  D R F  A   K+  ++ EV++  W+P GN +     +  G G ++V  YP  + + T EAHTS C  L  DP  ++LA GSAD LV++W +EE   +R+    +  + ++ FS+DG++L   SED  SID++ V +G+ +  +     +N +AWHP   LLA++
Sbjct:   27 HKASVHTVGWNSDGRRLASGSVDKTARIW----TPE----RTSDPRHSQELRGHTDSVDQLRWDPTHPDHLATASCDRTVRIWDAR-SGKSIHTIDTGGQ---NINISWSPDGQNIAVGNKEDVISIIDTRTFQIA---KKTQFRVEVNEIGWNPQGNLFF----LTTGQGHIKVLEYPSMNEIHTMEAHTSNCYCLEFDPRGRYLATGSADALVNLWDMEEFHNVRSFGVLDWPIRTISFSFDGQFLVSASED-LSIDISLVETGESVHKIDCFAAMNTVAWHPSKYLLAYA 299          
BLAST of NO30G01070 vs. NCBI_GenBank
Match: ORX51467.1 (WD40 repeat-like protein [Piromyces finnis])

HSP 1 Score: 197.6 bits (501), Expect = 7.500e-47
Identity = 111/309 (35.92%), Postives = 174/309 (56.31%), Query Frame = 0
Query:   57 KGRLEKAVHGEVGGGGHRRKVTCLKFNRSGSLLATGAADGSLRIYATVSTPQGLTALSSSTASTLDLRGHEKGLSSLGWNPASDTQLATCGYDRTVRLWDARHKGHETHKVTTAGSHAVNVNLAWSPNGQNLAVSNVHDQISFFDVRRFSSAEGCKRMSYKYEVHDFSWSPAGNHWVVCGAMRNGTGWLEVYTYPRQDSVFTTEAHTSTCLALSLDPTHQHLALGSADGLVSIWGLEELLPLRTMDRFNTAVSSLDFSYDGRWLAVGSEDSSSIDVTEVASGKQLALLKTEGGVNALAWHPKACLLAWS 366
            K R +++V  E    GHR+KV  + +NR G  LA+G+ D + R++            SSS    ++L+GH   +  L W+P     LAT   DRTVR+WD+R        ++T+G    N+N+ WSP+G+ +AV N  D ISF D+R +      +    + EV++ SW+  G+ +     + +G G +EV  YP    + + +AHT+ C  L  DP  ++LA GSAD LVS+W +E+L  +RT    N  V ++ FSYDG +LA  SED   ID++ V +G+Q+  ++    +N++AWHP   LLA++
Sbjct:   19 KQRFKQSVSREY--KGHRQKVHTVGWNRDGKKLASGSVDHTARVWN--------IERSSSHRDCIELKGHSGSVDQLCWDPTHSEYLATASADRTVRIWDSR-AAKCIQSISTSGE---NINICWSPDGKQIAVGNKEDTISFIDIRTYKIINTKRN---EIEVNEISWNFGGDKFF----LTSGLGTIEVLDYPSLKEIKSIQAHTANCYCLEFDPKGRYLATGSADTLVSLWDIEDLTCIRTFGNLNWPVRTISFSYDGEYLASASED-LFIDISNVETGEQVHKIECNAAMNSMAWHPSKYLLAYA 305          
BLAST of NO30G01070 vs. NCBI_GenBank
Match: XP_004349281.2 (transducin family protein/WD-40 repeat family protein [Capsaspora owczarzaki ATCC 30864] >KJE91395.1 transducin family protein/WD-40 repeat family protein [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 196.4 bits (498), Expect = 1.700e-46
Identity = 106/295 (35.93%), Postives = 166/295 (56.27%), Query Frame = 0
Query:   73 HRRKVTCLKFNRSGSLLATGAADGSLRIYATVSTPQGLTALSSSTASTLDLRGHEKGLSSLGWNPASDTQLATCGYDRTVRLWDARHKGHETHKVTTAGSHAVNVNLAWSPNGQNLAVSNVHDQISFFDVRRFSSAEGCKRMSYKYEVHDFSWSPAGNHWVVCGAMRNGTGWLEVYTYPRQDSVFTTEAHTSTCLALSLDPTHQHLALGSADGLVSIWGLEELLPLRTMDRFNTAVSSLDFSYDGRWLAVGSEDSSSIDVTEVASGKQLALLKTEGGVNALAWHPKACLLAWSHE 368
            H  K+T + +N  G  L T + D SLRI+               +   L+L+GH +G+  L W+P S + ++TC +DRTVR+WD R  G   + + T G    N+ LAWSP+GQ +AV N  D ISF DVR+   A+  KR+  + E ++ +W+  G+ + +      G G +++Y +P    + T +AHT  C+ +  DP  +  A GSAD LVSIW   EL+ LRT+ +F+  + ++ FS+D +++A  SED   ID++ V + + +  +     VN LAWHPK  +LA+  E
Sbjct:   20 HTNKITAVGWNTEGRYLGTASLDKSLRIW-------------HFSRQDLELKGHTEGIDKLCWSPTSASTISTCSHDRTVRIWDVR-AGKVANVIQTEG--GANIGLAWSPDGQTIAVGNRDDIISFIDVRQ---AKVLKRLDPEVEANEMAWNAEGDIFYI----STGLGAVQMYQFPSMTRINTVQAHTGNCVCIRFDPKGRFFATGSADSLVSIWDAYELICLRTVQQFDLPIRAIGFSHDSQFIASASED-KFIDISAVDNAESVYQIPVASLVNTLAWHPKEHILAYGGE 290          
BLAST of NO30G01070 vs. NCBI_GenBank
Match: ORY22478.1 (WD40 repeat-like protein [Neocallimastix californiae])

HSP 1 Score: 195.7 bits (496), Expect = 2.800e-46
Identity = 108/296 (36.49%), Postives = 166/296 (56.08%), Query Frame = 0
Query:   72 GHRRKVTCLKFNRSGSLLATGAADGSLRIYATVSTPQGLTALSSSTASTLDLRGHEKGLSSLGWNPASDTQLATCGYDRTVRLWDARHKGHETHKVTTAGSHAVNVNLAWSPNGQNLAVSNVHDQISFFDVRRFSSAEGCKRMSYKYEVHDFSWSPAGNHWVVCGAMRNGTGWLEVYTYPRQDSVFTTEAHTSTCLALSLDPTHQHLALGSADGLVSIWGLEELLPLRTMDRFNTAVSSLDFSYDGRWLAVGSEDSSSIDVTEVASGKQLALLKTEGGVNALAWHPKACLLAWSHE 368
            GHR KV  + +N  G  LA+G+ D + R++            SSS     +L+GH   +  L W+P     LAT   D TVR+WD+R  G  +H + T+G    N+N+ WSP+G+ +AV N  D ISF D R +         S  +EV++ SW+ AG+ +     + +G G +EV  +P    + + +AHT+ C  L  DP  ++LA GSAD LVS+W +E+L  +RT    N  V ++ FSYDG ++A  SED   ID++ V +G+Q+  ++    +N+LAWHP   LLA++ +
Sbjct:   32 GHRDKVHTVGWNCEGKKLASGSVDQTARVWN--------IERSSSHRDCTELKGHSGSVDQLCWDPTHSEYLATASADSTVRIWDSR-AGKCSHVIQTSGE---NINICWSPDGKQIAVGNKEDLISFIDTRTYKIVNS---KSNLFEVNEISWNFAGDKFY----LTSGKGTIEVLDFPSLKEIKSVQAHTANCYCLEFDPKGRYLATGSADTLVSLWEIEDLTCIRTFGNLNWPVRTISFSYDGEYIASSSED-LFIDISNVETGEQVHKIECNAAMNSLAWHPSKYLLAYASD 307          
BLAST of NO30G01070 vs. NCBI_GenBank
Match: XP_003748466.1 (PREDICTED: THO complex subunit 3 [Galendromus occidentalis])

HSP 1 Score: 194.9 bits (494), Expect = 4.900e-46
Identity = 105/295 (35.59%), Postives = 161/295 (54.58%), Query Frame = 0
Query:   71 GGHRRKVTCLKFNRSGSLLATGAADGSLRIYATVSTPQGLTALSSSTASTLDLRGHEKGLSSLGWNPASDTQLATCGYDRTVRLWDARHKGHETHKVTTAGSHAVNVNLAWSPNGQNLAVSNVHDQISFFDVRRFSSAEGCKRMSYKYEVHDFSWSPAGNHWVVCGAMRNGTGWLEVYTYPRQDSVFTTEAHTSTCLALSLDPTHQHLALGSADGLVSIWGLEELLPLRTMDRFNTAVSSLDFSYDGRWLAVGSEDSSSIDVTEVASGKQLALLKTEGGVNALAWHPKACLLAWS 366
            G H  KV C+ +N+ G  LA+G+ D ++ I+         T      +    LRGH   +  L W+P     LAT   D+TV++WDAR +   TH V T G    N+N+ WSP+GQ +A+ N  D +SF DV  F      K   +K+EV++ SW   G  +     + +G G + +Y+YP    V   +AH S C+ +  DPT ++ A GS+D LVS+W + EL+ LRT +R +  V +L FS+DG+ +A  SED   +D+  V +G  +  +  +    ++AWHPK  LLA++
Sbjct:   27 GVHSLKVHCVSWNQDGRKLASGSLDKTVTIF---------TLDKDRLSKDTTLRGHSDSVDQLCWHPKQVEVLATASVDKTVKMWDAR-QPKATHSVATKGE---NINICWSPDGQTIAIGNKEDLVSFIDVASFKIR---KEQQFKFEVNEMSWDKTGQFFF----LTSGLGCIHIYSYPDMALVQVLQAHPSNCICVQFDPTGKYFATGSSDALVSLWDVNELICLRTFNRLDWPVRTLSFSHDGKLIASASED-LIVDIAHVETGDLIYQIPVKASTFSVAWHPKRYLLAFA 300          
BLAST of NO30G01070 vs. NCBI_GenBank
Match: OAQ24881.1 (transducin family protein [Mortierella elongata AG-77])

HSP 1 Score: 193.0 bits (489), Expect = 1.800e-45
Identity = 103/293 (35.15%), Postives = 164/293 (55.97%), Query Frame = 0
Query:   73 HRRKVTCLKFNRSGSLLATGAADGSLRIYATVSTPQGLTALSSSTASTLDLRGHEKGLSSLGWNPASDTQLATCGYDRTVRLWDARHKGHETHKVTTAGSHAVNVNLAWSPNGQNLAVSNVHDQISFFDVRRFSSAEGCKRMSYKYEVHDFSWSPAGNHWVVCGAMRNGTGWLEVYTYPRQDSVFTTEAHTSTCLALSLDPTHQHLALGSADGLVSIWGLEELLPLRTMDRFNTAVSSLDFSYDGRWLAVGSEDSSSIDVTEVASGKQLALLKTEGGVNALAWHPKACLLAWS 366
            H+  V  + +N  G  LA+G+ D + R++A   T        S   S+++LRGH   +  L W+P     LAT   D+TVR+WDAR  G   HKV T+G    N+N++WSP+GQ +AV N  D +SF D R F           K EV++ SW+ AG+ ++    +  G G +++  YP    +   + HT+ C  L LDP  ++LA GSAD LV++W + +   +RT  + +  + ++ FS+DG ++A  SED  +ID++ V SG+ +  ++    +N +AWHP   LLA++
Sbjct:   27 HKSNVHTVGWNCDGRRLASGSVDKTARVWAPERT--------SDPRSSIELRGHTDSVDQLRWDPTHPDHLATASCDKTVRIWDAR-SGKSIHKVDTSGQ---NINISWSPDGQCIAVGNKEDMVSFIDTRTFKVEH---TYQSKVEVNEISWNHAGDLFL----LTTGQGTVKIMAYPSMKELRVLDGHTANCYCLELDPRGRYLATGSADALVNLWEMNDFSCVRTFGKLDWPIRTISFSFDGEFIASASED-LAIDISSVESGETVHKIECYAAMNTVAWHPSKYLLAYA 299          
BLAST of NO30G01070 vs. NCBI_GenBank
Match: XP_022664790.1 (THO complex subunit 3-like isoform X1 [Varroa destructor])

HSP 1 Score: 192.2 bits (487), Expect = 3.100e-45
Identity = 104/293 (35.49%), Postives = 161/293 (54.95%), Query Frame = 0
Query:   73 HRRKVTCLKFNRSGSLLATGAADGSLRIYATVSTPQGLTALSSSTASTLDLRGHEKGLSSLGWNPASDTQLATCGYDRTVRLWDARHKGHETHKVTTAGSHAVNVNLAWSPNGQNLAVSNVHDQISFFDVRRFSSAEGCKRMSYKYEVHDFSWSPAGNHWVVCGAMRNGTGWLEVYTYPRQDSVFTTEAHTSTCLALSLDPTHQHLALGSADGLVSIWGLEELLPLRTMDRFNTAVSSLDFSYDGRWLAVGSEDSSSIDVTEVASGKQLALLKTEGGVNALAWHPKACLLAWS 366
            H  KV C+ +N+ G  LA+G+ D S+ I+                A    LRGH + +  L W+P +   LAT   DR+V+LWDAR +    H V T G    N+N+ W P+GQ LAV N  D +SF DV  F   +      +K+EV++ SW  +G  +     + +G G + V++YP   S+   +AH S C+ +  DP  ++ A GS+D LVS+W + EL+ +RT +R +  V +L FS+DG+ +A  SED   ID+  V +G+ +  +  +    ++AWHPK  LLA++
Sbjct:   40 HSLKVHCVTWNQDGRRLASGSLDKSVTIF---------NLEKDRLAKDTTLRGHSESVDQLCWHPRNPDVLATASIDRSVKLWDAR-QPKAVHTVATKGE---NINICWHPDGQTLAVGNKEDLVSFVDVSTFKIRQ---EQQFKFEVNEMSWDKSGYFFF----LTSGLGCIHVFSYPEMTSIQVLQAHPSNCICIEFDPRGRYFATGSSDALVSLWDVNELICIRTFNRLDWPVRTLSFSHDGKLIASASED-LVIDIAHVETGEMVHQIPVKASTFSVAWHPKRHLLAFA 311          
BLAST of NO30G01070 vs. NCBI_GenBank
Match: XP_022664791.1 (THO complex subunit 3-like isoform X2 [Varroa destructor] >XP_022664792.1 THO complex subunit 3-like isoform X2 [Varroa destructor] >XP_022664793.1 THO complex subunit 3-like isoform X2 [Varroa destructor] >XP_022686048.1 THO complex subunit 3-like [Varroa jacobsoni] >XP_022686049.1 THO complex subunit 3-like [Varroa jacobsoni])

HSP 1 Score: 192.2 bits (487), Expect = 3.100e-45
Identity = 104/293 (35.49%), Postives = 161/293 (54.95%), Query Frame = 0
Query:   73 HRRKVTCLKFNRSGSLLATGAADGSLRIYATVSTPQGLTALSSSTASTLDLRGHEKGLSSLGWNPASDTQLATCGYDRTVRLWDARHKGHETHKVTTAGSHAVNVNLAWSPNGQNLAVSNVHDQISFFDVRRFSSAEGCKRMSYKYEVHDFSWSPAGNHWVVCGAMRNGTGWLEVYTYPRQDSVFTTEAHTSTCLALSLDPTHQHLALGSADGLVSIWGLEELLPLRTMDRFNTAVSSLDFSYDGRWLAVGSEDSSSIDVTEVASGKQLALLKTEGGVNALAWHPKACLLAWS 366
            H  KV C+ +N+ G  LA+G+ D S+ I+                A    LRGH + +  L W+P +   LAT   DR+V+LWDAR +    H V T G    N+N+ W P+GQ LAV N  D +SF DV  F   +      +K+EV++ SW  +G  +     + +G G + V++YP   S+   +AH S C+ +  DP  ++ A GS+D LVS+W + EL+ +RT +R +  V +L FS+DG+ +A  SED   ID+  V +G+ +  +  +    ++AWHPK  LLA++
Sbjct:   29 HSLKVHCVTWNQDGRRLASGSLDKSVTIF---------NLEKDRLAKDTTLRGHSESVDQLCWHPRNPDVLATASIDRSVKLWDAR-QPKAVHTVATKGE---NINICWHPDGQTLAVGNKEDLVSFVDVSTFKIRQ---EQQFKFEVNEMSWDKSGYFFF----LTSGLGCIHVFSYPEMTSIQVLQAHPSNCICIEFDPRGRYFATGSSDALVSLWDVNELICIRTFNRLDWPVRTLSFSHDGKLIASASED-LVIDIAHVETGEMVHQIPVKASTFSVAWHPKRHLLAFA 300          
BLAST of NO30G01070 vs. NCBI_GenBank
Match: ORX75402.1 (WD40 repeat-like protein [Anaeromyces robustus])

HSP 1 Score: 191.4 bits (485), Expect = 5.400e-45
Identity = 107/294 (36.39%), Postives = 165/294 (56.12%), Query Frame = 0
Query:   72 GHRRKVTCLKFNRSGSLLATGAADGSLRIYATVSTPQGLTALSSSTASTLDLRGHEKGLSSLGWNPASDTQLATCGYDRTVRLWDARHKGHETHKVTTAGSHAVNVNLAWSPNGQNLAVSNVHDQISFFDVRRFSSAEGCKRMSYKYEVHDFSWSPAGNHWVVCGAMRNGTGWLEVYTYPRQDSVFTTEAHTSTCLALSLDPTHQHLALGSADGLVSIWGLEELLPLRTMDRFNTAVSSLDFSYDGRWLAVGSEDSSSIDVTEVASGKQLALLKTEGGVNALAWHPKACLLAWS 366
            GHR+KV  + +N  G  LA+G+ D + R++            SSS    ++L+GH   +  L W+P     LAT   D+TVR+WD+R  G   H + T+G    N+N+ WSP+G+ +AV N  D ISF D R   + +         EV++ SW+  G+ +     + +G G +EV  YP    + + +AHT+ C  L  DP  ++LA GSAD LVS+W +E+L  +RT    N  V ++ FS+DG +LA  SED   ID++ V +G+Q+  ++    +N+LAWHP   LLA++
Sbjct:   32 GHRQKVHTVGWNIEGKKLASGSVDQTARVWN--------IERSSSHRDCIELKGHTGSVDQLCWDPTHSEYLATASADKTVRIWDSR-AGKCIHVIPTSGE---NINICWSPDGKQIAVGNKEDLISFIDTR---THKVVNTKQNDIEVNEISWNYGGDKFF----LTSGQGTIEVLEYPSLKELKSIQAHTANCYCLEFDPNGRYLATGSADTLVSLWEVEDLTCIRTFGNLNWPVRTISFSHDGEYLASASED-LFIDISNVETGEQVHKIECNAAMNSLAWHPSKYLLAYA 305          
The following BLAST results are available for this feature:
BLAST of NO30G01070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_021879677.13.600e-4936.18WD40-repeat-containing domain protein [Lobosporang... [more]
KFH70471.18.800e-4837.20hypothetical protein MVEG_03321 [Mortierella verti... [more]
ORX51467.17.500e-4735.92WD40 repeat-like protein [Piromyces finnis][more]
XP_004349281.21.700e-4635.93transducin family protein/WD-40 repeat family prot... [more]
ORY22478.12.800e-4636.49WD40 repeat-like protein [Neocallimastix californi... [more]
XP_003748466.14.900e-4635.59PREDICTED: THO complex subunit 3 [Galendromus occi... [more]
OAQ24881.11.800e-4535.15transducin family protein [Mortierella elongata AG... [more]
XP_022664790.13.100e-4535.49THO complex subunit 3-like isoform X1 [Varroa dest... [more]
XP_022664791.13.100e-4535.49THO complex subunit 3-like isoform X2 [Varroa dest... [more]
ORX75402.15.400e-4536.39WD40 repeat-like protein [Anaeromyces robustus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR073ncniR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR098ngnoR098Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR097ngnoR097Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G01070.1NO30G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633981gene_10221Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101353g1gene9709Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G01070.1NO30G01070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G01070 ID=NO30G01070|Name=NO30G01070|organism=Nannochloropsis oceanica|type=gene|length=2762bp
ATGAAAGACAGCACACACACAGTATGCTCATCTCCTTCTTCCCCTGCACG
CCCGCTCCCTAATCGACAGCTACCTGCAGCTGCATTCTGGCTCCTACCCG
CCTTCATCATCAGCACCAGCACGTCACAGCAGGGGGGAGGAGAAAATATG
GCTTCGGCATGGGAGCTGAAGGGGCGGCTGGAGAAAGCCGTGCACGGGGA
AGTAGGAGGAGGAGGGCACAGACGAAAGgtatgtgggagggttggggtgg
gtgccatggaggaaagaggggtggacgacaggagggagtatgcgtagaac
aatgcggctagcttgggggggccaaaagccaaaaacccggacaccttggg
aggtagaggacgaatacgaagacatctcattcatgtctcataaatgcacc
tatgtgtacgacgactttgccttatctcttcttcgcttcacctccaccct
cttcctccttcccctccttccctcccctccttccccttcattcctccccc
gtcaaatgaagGTGACATGCCTGAAATTCAATCGGTCGGGGAGTTTATTG
GCCACGGGGGCCGCGGATGGCAGCTTGCGGATCTACGCTACAGTCAGgta
agggaaggagggagggaaggagggagggaaggaagaagggagggaaggag
ggagggcatggtgaccgatggtgaccgcattgaatttatcgtctctcctg
ccaccctcaaaatcgtccaaatccatcagTACACCGCAGGGGCTGACGGC
CCTCTCCTCCTCCACGGCCTCTACGCTCGACTTAAGGGGACACGAGAAAG
GCCTCTCGTCCCTGGGATGGAACCCAGCGAGTGACACACAGCTGGCGACT
TGTGGCTATGACCGAACCGTGCGGTTGTGGGATGCCCGGCACAAGgtaag
aaggaaggatgggagggaaggaaggaaggagggagggagggaggggcctt
gagtggagccagattcagacaaactctccctcgctccctccctcccttcc
tccctcttcatcatattcctcattctgacaatcaccatctcctaatatct
ttctccctccgtctttccctgcctccctccccacctttctagGGCCATGA
AACGCACAAAGTAACGACGGCCGGTTCCCACGCCGTGAACGTTAATCTTG
CCTGGTCTCCAAACGGCCAAAATCTTGCCGTGTCCAACGTGCATGATCAG
gtatgaaggtcatcagtccctcccctcttccgtctctcccttactccctc
cctcccttcctcacctccctctttctcctcttcctcgttctcacctcctt
tcccttcttctcttttactcccccctccttccctccctccctccctccct
ccctccctccttccctcagATAAGCTTCTTTGACGTCCGAAGATTTTCCT
CTGCGGAAGGGTGCAAGCGTATGTCCTACAAATACGAGgtatctcccccc
tcctcccctccctccctccttccctccctttgtttctgcttccatcccca
tcacatgtctgcctcctcaagcattttattccatcacccataccttccac
acacttctctcttgtcccaaaaatcacccctcttccttcctccctcccgc
cctcccgccctccccccctccctccctcagGTCCACGACTTCTCCTGGTC
TCCGGCCGGTAATCACTGGGTGGTCTGTGGAGCTATGAGAAACGGCACTG
GCTGGCTCGAAGTATACACGTACCCACGCCAGgtaaagccctccctgctt
tctttttcctctctccctccctccctccctccctccgagcagtgccccac
aagagcggacgtggacgcgcacctccagacctcactctcacccccctttt
ccccctccttccctcgttccctccttccctccctccttccctccctcctt
ccctccctccttccctccctccttccctcccttcagGACTCGGTGTTTAC
CACAGAGGCCCATACTTCCACCTGCCTTGCCCTCTCCCTCGACCCTACCC
ACCAGCACCTGGCCTTGGGCAGCGCTGATGGCCTCGTCTCCATATGGGGC
TTGGAAGAACTGCTGCCGTTACGGACGATGGACCGTTTCAACACGGCCGT
TTCTTCCCTCGACTTTTCCTACGACGGCCGATGGCTCGCAGgtaggcatg
agggtgtgtgggcttgtgcctgtcccttgccctccctccttcccgccctc
cctccctgttcgttgagtattgggaagtgagatgactcattactctctct
caacgccaatcgtaatttctcactaatgatttgaatttcgatatcataaa
ttcaaatcccaacctcattatcattatcattatatcaatatcaatgtcta
aatatcttcatctcaatttctcaatcttcaatcttaatatgttaatcata
ataaactgcaatcttaatatgttaatcataataaactgcaatcttaatat
gttaatcataatatcggaatcttaatcttaattttcccatctcaatcctt
cttgccagTCGGTTCGGAGGATAGCAGCAGCATCGACGTCACGGAAGTCG
CCTCGGGAAAACAACTCGCTTTGCTCAAGACAGAGGGAGGTGTTAATGCT
CTCGCCTGGCACCCGAAGGCATGTCTGCTGGCTTGGTCTCATGAAATGGG
AGGAGGAGGAGGAGGAGGGACGGGGGTGGGAAGTTTGGGAGGGAGTAGTG
GCAGTGGAGGGGGGAGGAAGGAGGAGGGGGTAAGATTCGTGAGCGTGAGC
GATCGAGTATAA
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protein sequence of NO30G01070.1

>NO30G01070.1-protein ID=NO30G01070.1-protein|Name=NO30G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MKDSTHTVCSSPSSPARPLPNRQLPAAAFWLLPAFIISTSTSQQGGGENM
ASAWELKGRLEKAVHGEVGGGGHRRKVTCLKFNRSGSLLATGAADGSLRI
YATVSTPQGLTALSSSTASTLDLRGHEKGLSSLGWNPASDTQLATCGYDR
TVRLWDARHKGHETHKVTTAGSHAVNVNLAWSPNGQNLAVSNVHDQISFF
DVRRFSSAEGCKRMSYKYEVHDFSWSPAGNHWVVCGAMRNGTGWLEVYTY
PRQDSVFTTEAHTSTCLALSLDPTHQHLALGSADGLVSIWGLEELLPLRT
MDRFNTAVSSLDFSYDGRWLAVGSEDSSSIDVTEVASGKQLALLKTEGGV
NALAWHPKACLLAWSHEMGGGGGGGTGVGSLGGSSGSGGGRKEEGVRFVS
VSDRV*
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Synonyms
Publications