NO30G01000, NO30G01000 (gene) Nannochloropsis oceanica

Overview
NameNO30G01000
Unique NameNO30G01000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2736
Alignment locationchr30:369603..372338 -

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Properties
Property NameValue
DescriptionMetabotropic glutamate receptor-like protein P
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:369603..372338 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004965G protein-coupled GABA receptor activity
GO:0004930G protein-coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G protein-coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR002455GPCR3_GABA-B
IPR017978GPCR_3_C
Homology
BLAST of NO30G01000 vs. NCBI_GenBank
Match: XP_004342413.1 (hypothetical protein CAOG_08244 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 89.7 bits (221), Expect = 3.100e-14
Identity = 71/302 (23.51%), Postives = 137/302 (45.36%), Query Frame = 0
Query:  177 SVAQAVTREVLPPKHFLTIAPAITYAMGAIVALTLAFLLFNVAALLYYRKHKIIRFSQGDILQAMTLSSIVAVGSLPLAAVPS--------------TPSCLLRPWLQIIPLNFLFGLLFGKTWRIHRLLNNKQLKAIKIRQSAVFFVAFLLTLPEIAIHGLYFLLAPPTLSEKTVLNE---FTFVNTCASNPFYKRIFDALHLVYGALILILGCYVAQKSAALTTLFNEGTYILFAIYTCSILAVIIVPATFAVASSPQTAYILRVLGVCLAAAGTIGAINLPKLLLIRSGVEMSLQENKT 462
            +V+  +T  +  P    T++ +   A+  + +L     +     L  +  H  IR S   +LQ M  S+++   ++ L  V S              +  C   PWL  +  + ++G +  K WRIH++ NN+  + I +    +     +  + +I ++ ++  + P  L    + +     T  + C S+ F   I+ A++L +   +L+ G Y+A     +   FNE   + FAIY  + ++ II+P   A+ +S    Y++   G  LA   TI  I +PK++L+ SG + S+Q   +
Sbjct:  641 TVSNGLTYPICVPAELSTVSTSAFIAVQVVTSLCAVGTIVIFVILRRHLSHSSIRASSPVLLQFMLASTVLVYAAIFLMGVDSGSDDNSLVSLSTVASNICRAIPWLLGLGFDLVYGAMLAKAWRIHKIFNNRLRRRIMLTDGNLIKHIVIFAMHDIILNAVWVGVDPLGLEYHVLSSSSSGTTVTSQCRSDNF--GIYLAIYLAFKGAVLLAGIYLAIACRNVADQFNESKQLGFAIYNLTFISCIIIPLVLAIQASATVVYLIAAFGTLLALVMTIAIIFVPKIVLVYSGADTSVQNTSS 940          
BLAST of NO30G01000 vs. NCBI_GenBank
Match: KJE98253.1 (hypothetical protein CAOG_008244 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 89.7 bits (221), Expect = 3.100e-14
Identity = 71/302 (23.51%), Postives = 137/302 (45.36%), Query Frame = 0
Query:  177 SVAQAVTREVLPPKHFLTIAPAITYAMGAIVALTLAFLLFNVAALLYYRKHKIIRFSQGDILQAMTLSSIVAVGSLPLAAVPS--------------TPSCLLRPWLQIIPLNFLFGLLFGKTWRIHRLLNNKQLKAIKIRQSAVFFVAFLLTLPEIAIHGLYFLLAPPTLSEKTVLNE---FTFVNTCASNPFYKRIFDALHLVYGALILILGCYVAQKSAALTTLFNEGTYILFAIYTCSILAVIIVPATFAVASSPQTAYILRVLGVCLAAAGTIGAINLPKLLLIRSGVEMSLQENKT 462
            +V+  +T  +  P    T++ +   A+  + +L     +     L  +  H  IR S   +LQ M  S+++   ++ L  V S              +  C   PWL  +  + ++G +  K WRIH++ NN+  + I +    +     +  + +I ++ ++  + P  L    + +     T  + C S+ F   I+ A++L +   +L+ G Y+A     +   FNE   + FAIY  + ++ II+P   A+ +S    Y++   G  LA   TI  I +PK++L+ SG + S+Q   +
Sbjct:  261 TVSNGLTYPICVPAELSTVSTSAFIAVQVVTSLCAVGTIVIFVILRRHLSHSSIRASSPVLLQFMLASTVLVYAAIFLMGVDSGSDDNSLVSLSTVASNICRAIPWLLGLGFDLVYGAMLAKAWRIHKIFNNRLRRRIMLTDGNLIKHIVIFAMHDIILNAVWVGVDPLGLEYHVLSSSSSGTTVTSQCRSDNF--GIYLAIYLAFKGAVLLAGIYLAIACRNVADQFNESKQLGFAIYNLTFISCIIIPLVLAIQASATVVYLIAAFGTLLALVMTIAIIFVPKIVLVYSGADTSVQNTSS 560          
BLAST of NO30G01000 vs. NCBI_GenBank
Match: KYQ90566.1 (G-protein-coupled receptor family 3 protein 5 [Tieghemostelium lacteum])

HSP 1 Score: 79.3 bits (194), Expect = 4.200e-11
Identity = 72/264 (27.27%), Postives = 125/264 (47.35%), Query Frame = 0
Query:  198 AITYAMGAIVALTLAFLLFNVAALLYYRKHKIIRFSQGDILQAMTLSSIVAVGSL-PLAAVPSTPSCLLRPWLQIIPLNFLFGLLFGKTWRIHRLLNN-KQLKAIKIRQSAVFFVAFLLTLPEIAIHGLYFLLAPPTLSEKTVLNEFTFVNTCASNP---FYKRIFDALHLVYGALILILGCYVAQKSAALTTLFNEGTYILFAIYTCSILAVIIVPATFAVASSPQTAYILRVLGVCLAAAGTIGAINLPKLLLIRSGVEMSL 457
            A+   +GAI  L + F+LF +  ++ ++  K  R+S       + L +++ + S+  L   P++  CL  PWL  I    LFG LF KTWR  RL +N ++ K I+I    +F V     L E     L+  L  P +S + +         C +N    +Y  +F      Y    +I+G ++A K+  +    NE   I F++Y  + +  I +P  F +   P    +++++ + L    T+G + LPK+  I SG + S+
Sbjct:  422 ALNSILGAIAGLCVLFVLF-IGFIIIFQWRK-FRYSSPLFCVFIILGALLGLASVFTLLPNPNSELCLSFPWLLGIGFVLLFGTLFTKTWRTWRLFHNARKFKIIRISNKMMFLVVGSFVLFEAIFMILWSTLGDPNVSVEPIYKSGQAQLQCTTNSAAWWYVFVF------YKVFYVIVGVFLAFKTRDVVDSLNESKPISFSLYNLTFVMTISIPLGFILTDYPTAVLVIQIVAILLCFTTTVGLLFLPKVWKIVSGQQHSM 677          
BLAST of NO30G01000 vs. NCBI_GenBank
Match: XP_012684149.1 (PREDICTED: gamma-aminobutyric acid type B receptor subunit 2-like [Clupea harengus])

HSP 1 Score: 78.2 bits (191), Expect = 9.300e-11
Identity = 61/257 (23.74%), Postives = 121/257 (47.08%), Query Frame = 0
Query:  207 VALTLAFLLFNVAALLYYRKHKIIRFSQGDILQAMTLSSIVAVGSLPLAAVPST--------PSCLLRPWLQIIPLNFLFGLLFGKTWRIHRLLNNKQLKAIKIRQSAVFFVAFLLTLPEIAIHGLYFLLAPPTLSEKTVLNE----------FTFVNTCASNPFYKRIFDALHLVYGALILILGCYVAQKSAALT-TLFNEGTYILFAIYTCSILAVIIVPATFAVASSPQTAYILRVLGVCLAAAGTIGAINLPK 445
            V +  +FL FN    + +R H++I+ S   I   + L  +++   + L  +  +          C +RPW   I     FG +F KTWR+H +  N QLK   ++   +  V   + L +++I   + ++ P   + +    E           TFV  C S   +   + A+   Y  ++++LGC+++ ++  ++  + N+  YI +++YT  I+++I  PA+F     P   + +  L + +A  GT+  + +PK
Sbjct:  430 VLMASSFLFFN----MKHRHHRVIKMSSPFINNLIILGGMLSYSFIILLGLDGSLISDGSFETLCTIRPWTLTIGYTMAFGAMFAKTWRVHAIFKNVQLKKKVLKDLRLLVVVGGMLLIDVSILTCWHIIDPLRRTVEEYRTEPDSNGNDIALHTFVERCEST--HMSTWLAIVCSYKGVLMVLGCFLSWETQHISIAVLNDSRYIGWSVYTVGIMSLIGAPASFLTRELPNVQFCVVALAIIIATTGTLCLLFMPK 680          
BLAST of NO30G01000 vs. NCBI_GenBank
Match: XP_002112957.1 (hypothetical protein TRIADDRAFT_56610 [Trichoplax adhaerens] >EDV25067.1 hypothetical protein TRIADDRAFT_56610 [Trichoplax adhaerens])

HSP 1 Score: 77.4 bits (189), Expect = 1.600e-10
Identity = 77/308 (25.00%), Postives = 141/308 (45.78%), Query Frame = 0
Query:  157 YTIIAHIWLETRKNNDVIKWSVAQAV--TREVLPPKHFLTIAPAITYAMGAIVALT------LAFLLFNVAALLYYRKHKIIRFSQGDILQAMTLSSIVAVGSLPLAAVPSTPSCLLRPWLQIIPLNFLFGLLFGKTWRIHRLLNNKQLKAIKIRQSAVFFVAFLLTLPEIAIHGLYFLLAPPTLSEKTVLNEFTFVNT----------CASNPFYKRIFDALHLVYGALILILGCYVAQKSAALT-TLFNEGTYILFAIYTCSILAVIIVPATFAVASSPQTAYILRVLGVCLAAAGTIGAINLPKL 446
            YT+   I+   ++  D I+W   Q V    + +P  H       I+ ++ A++A T      + F +  +A  L YR   II F              +  G +PL  VP+   C ++ WL  I   F FG LF KTWRIH++   K  +++ I+   +    F L + ++ I   + ++ P  L   T+  +     +          C+ N     ++ A+   Y  L+L++G ++A ++  +T    N+  +I F+IY  ++LA +    +F V +SP T Y+L  + + + +  T+  I +PK+
Sbjct:  236 YTVQVGIY---QRKLDTIEWDPNQRVQWLGDRVPVSHVSIETETISISIPALIAFTILSGIGILFCIGLIAFTLNYRHDSIIVFG-------------IDSGVVPLITVPA--FCTVKIWLLCIGFTFAFGALFAKTWRIHKIFTCKTRQSVVIKDWHLLTTVFQLLIIDVIILLCWTIIDPMQLKHLTITTQINQDESSTISRQLQYYCSCNQIV--VWMAIVFGYKFLLLLIGSFLAYETRNVTIPALNDTKFIGFSIYNVTLLAAVGSIISFVVRASPTTLYVLHAILIFICSTTTLMFIFIPKI 523          
BLAST of NO30G01000 vs. NCBI_GenBank
Match: XP_020435211.1 (G-protein-coupled receptor family 3 protein 5 [Heterostelium album PN500] >EFA83094.1 G-protein-coupled receptor family 3 protein 5 [Heterostelium album PN500])

HSP 1 Score: 76.6 bits (187), Expect = 2.700e-10
Identity = 69/265 (26.04%), Postives = 121/265 (45.66%), Query Frame = 0
Query:  202 AMGAIVALTLAFLLF-NVAALLYYRKHKIIRFSQGDILQAMTLSSIVA-VGSLPLAAVPSTPSCLLRPWLQIIPLNFLFGLLFGKTWRIHRLL-NNKQLKAIKIRQSAVFFVAFLLTLPEIAIHGLYFLLAPPTLSEKTVLNEFTFVNTCASNPFYKRIFDALHLVYGALILILGCYVAQKSAALTTLFNEGTYILFAIYTCSILAVIIVPATFAVASSPQTAYILRVLGVCLAAAGTIGAINLPKLLLIRSGVEMSLQENKTTA 464
            A+GA+  + +  +LF  +  ++ +RK    R+S       + L S+   +  L L   P+   C   PWL       +FG LF KTWR  RL  N ++ K IKI    +F V     L E A   ++ ++  P +S + +       N C ++         L  V+    +I+G ++A K+  +    NE   I  A+Y    + ++ +P  F +   P    ++ V+ + LA   T+G + LPK+ LI SG + S+    +++
Sbjct:  468 ALGAVTGVCIILVLFIGITIVIQWRK---FRYSSPLFCCLIILGSLFGFISILTLLPEPNDALCTSFPWLLGYGYVIMFGTLFTKTWRTWRLFANARKFKIIKISNKMIFSVVGAFLLIESAFLVIWTIVDRPKVSAEPIYRNGEAQNQCVTDSLAWWYVFCLSKVF---YVIVGVFLAYKTRDVVDSLNESKPISMALYNMVFVMLVAIPIGFLLTDYPTAVIVIEVVAILLAFTATVGLLFLPKVWLIVSGQQKSIDTRDSSS 726          
BLAST of NO30G01000 vs. NCBI_GenBank
Match: XP_004346763.2 (hypothetical protein CAOG_05078 [Capsaspora owczarzaki ATCC 30864] >KJE94435.1 hypothetical protein CAOG_005078 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 75.9 bits (185), Expect = 4.600e-10
Identity = 75/270 (27.78%), Postives = 126/270 (46.67%), Query Frame = 0
Query:  207 VALTLAFLLFNVAALLYYRKH---KIIRFSQGDILQAMTLSSIVAVGSLPLAA-VPSTPSCLLRPWLQIIPLNFLFGLLFGKTWRIHRLLNNKQLKAIKIRQSAVFFVAFLLTLPEIAIHGLYFLLAPPTLSEKTV------LNEFTFVN-----TCASNPFYKRIFDALHLVYGALILILGCYVAQKSAALTTLFNEGTYILFAIYTCSILAVIIVPATFAVASSPQTAYILRVLGVCLAAAGTIGAINLPKLLLIRSGVEMSLQENKT 462
            V L   F+L     LL+  ++   +II  S    L  +   ++++   + LAA  P+   C   PW++ +   F+FG LF KT+RI R+ NN  +K I+++ + +F   F + L       ++  ++ P +SE  V       N+  FV       C+SN      FD+  L+   + LI G Y+A K     T FNE  YI+ A+Y    +AV++             AY+L  + V    +  +  I +PK+ L+R+G     +E+ T
Sbjct: 1233 VVLAAIFILIAFGFLLFLMRNWSSRIIVASSPTFLALILFGALLSYVWIFLAAPTPTDALCAAMPWVRHLGFCFVFGALFLKTYRIDRIFNNDAIKRIRMKDTVLFHYMFRIVLMFALYLAIWTGISRP-ISEVRVDITSDQTNQGVFVTQQLVPRCSSN-----WFDSAILIVELMFLIWGLYLAIKVRHTPTAFNESKYIVVAVYNFVFVAVVLQIILQTAIKDRDIAYVLESIYVIFTVSAVVLLIFVPKVSLVRNGGIAETRESYT 1496          
BLAST of NO30G01000 vs. NCBI_GenBank
Match: AIT71769.1 (gamma aminobutyric acid type b receptor subunit 2 [Anisakis simplex])

HSP 1 Score: 75.9 bits (185), Expect = 4.600e-10
Identity = 78/306 (25.49%), Postives = 140/306 (45.75%), Query Frame = 0
Query:  186 VLPPKHFLTIAPAITYAMGAIVALTLAFLLFNVAALLYYRKHKIIRFSQGDILQAMTLSSIVAVGSLPLAAVPS--------TPSCLLRPWLQIIPLNFLFGLLFGKTWRIHRLLNNKQLKAIKIRQSAVFFVAFLLTLPEIAIHGLYFLLAPPTLS----------EKTVLNEFTFVNTCASNPFYKRIFDALHLVYGALILILGCYVAQKSAAL-TTLFNEGTYILFAIYTCSILAVIIVPATFAVASSPQTAYILRVLGVCLAAAGTIGAINLPKL-LLIR--SGVEMSLQEN--KTTAGGKT 468
            VL  + ++  A  I  ++ A V +TLAF+   +   + YR H+ I+ S  +I   +   SI    S+ L  + +           C  + W+  +   F FG +F KTWR+H +  N ++    I+   +F    L+ L ++A   L+ L+AP +LS           K +  E   +  C S+     +F+A+      L++ILGC++A ++  +     N+  YI  ++Y   ++  + +   F +      AY L    +      T+  + +PK+ +LIR  SGVE S Q+   K+  G +T
Sbjct:  444 VLHQRLYIANALVILMSLLAAVGVTLAFIFLTLN--IQYRNHRFIKMSSPNINNLIIAGSICTYISVILLGLDTRIVSPRGFVALCYAKTWILCLGFTFAFGSMFSKTWRVHSIFTNIRMNKKAIKDYKLFLFVGLIALLDVATLTLWALVAPFSLSIIQLDAIYMENKVIAPE---IERCYSDE--SVVFEAIIFGTKGLLMILGCFLAWETRHVNVAALNDSKYIGMSVYNVVVMCTLGLALAFILQDRINEAYALTTFFIIFCTTLTLCLVFVPKIVVLIRNPSGVEPSYQKGLMKSVIGNQT 742          
BLAST of NO30G01000 vs. NCBI_GenBank
Match: ELT87875.1 (hypothetical protein CAPTEDRAFT_222380 [Capitella teleta])

HSP 1 Score: 73.9 bits (180), Expect = 1.800e-9
Identity = 65/266 (24.44%), Postives = 120/266 (45.11%), Query Frame = 0
Query:  203 MGAIVALTLAFLLFNVAALLYYRKHKIIRFSQGDILQAMTLSSIVAVGSLPL-----AAVPSTPSCLL---RPWLQIIPLNFLFGLLFGKTWRIHRLLNNKQLKAIKIRQSAVFFVAFLLTLPEIAIHGLYFLLAPPTLSEKTV----------LNEFTFVNTCASNPFYKRIFDALHLVYGALILILGCYVAQKSAALT-TLFNEGTYILFAIYTCSILAVIIVPATFAVASSPQTAYILRVLGVCLAAAGTIGAINLPKLLLIR 450
            +G I+ALT  FL  N+     +R+H+ I+ S  ++   + +  + A  S+ L       VP     +L   R W+  +     FG +F KTWR+H +  N +L    I+   +F +   L   +I I   + +  PP    K +          +     +  C S   +  I+     VY  L+L+ GC++A ++  ++    N+  YI  ++Y   I+ V  VP TF +   P  AY++  L +  +   T+  + +PK++ ++
Sbjct:  372 LGIIIALT--FLAINIR----FRRHRYIKMSSPNMNNLIIMGCVFAYTSVFLLGADGGLVPPHHYAILCSGRTWIMCVGFTLSFGAMFSKTWRVHAIFTNIKLNKKVIKDYKLFLLVAFLLFIDIVILSAWQIFDPPERETKNLRARIDPREMDVEILPVMEFCISR--HMTIWLISIYVYKGLLLVFGCFLAWETRQVSIAALNDSKYIGMSVYNVVIMCVSGVPVTFIIKDRPDAAYLIIALFITFSTTITLCLVFMPKIVQLK 629          
BLAST of NO30G01000 vs. NCBI_GenBank
Match: GBG30807.1 (Metabotropic glutamate receptor-like protein B [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 73.9 bits (180), Expect = 1.800e-9
Identity = 67/301 (22.26%), Postives = 134/301 (44.52%), Query Frame = 0
Query:  150 VRLDPGTY--TIIAHIWLETRKNNDVIKWSVAQAVTREVLPPKHFLTIAPAITYAMGAIVALTLAFLLFNVAALLYYRKHKIIRFSQGDILQAMTLSSIVAVGSLPLAAVPSTPSCLLRPWLQIIPLNFLFGLLFGKTWRIHRLLNNKQLKAIKIRQSAVFFVAFLLTLPEIAIHGLYFLLAPPTLSEKTVLNEFTFVNTCASNPFYKRIFDALHLVYGALILILGCYVAQKSAALTTLFNEGTYILFAIYTCSILAVIIVPATFAVASSPQTAYILRVLGVCLAAAGTIGAINLPKLLLI 449
            + L+ GTY  TI+A +   T +   ++  S    +  E       + ++  + +   A+ +++   +   +     +R H+I+   Q D+L  +   + V+  ++ L AVPS+ +C    W   +     F  + GK WR H++ NN+ +K  K  +  +   + L+ L ++ I  ++ +  P +L  +  + E   VN C S+  +  IF  L L+    +L+ G   A +   +  + +E   + F +    ++ V+IVP  +     P   Y L  + V L     +    LP++L I
Sbjct:  259 LELNNGTYKVTIVAQVTPLTDEETVLLVRSEKLFIDIEAELGSDAIFVSEQMQHVGIALASISYVTIFLLILWQYKHRFHRIVLIGQSDLLLMILFGTTVSTVTILLFAVPSSKACQATSWTYTLGFAITFSGIIGKLWRAHKIFNNRYMKVRKNVRRNLALGSILVVLIDLLILIIWTIFDPLSLEHR--VGESQMVNVCTSDSAW--IFAGLVLINHGALLVFGLCKANEDKDINRILSEARELRFVLAASIVVPVLIVPLLWVYFDQPDLRYALNSIVVFLTNMSILAICFLPRILHI 555          
The following BLAST results are available for this feature:
BLAST of NO30G01000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_004342413.13.100e-1423.51hypothetical protein CAOG_08244 [Capsaspora owczar... [more]
KJE98253.13.100e-1423.51hypothetical protein CAOG_008244 [Capsaspora owcza... [more]
KYQ90566.14.200e-1127.27G-protein-coupled receptor family 3 protein 5 [Tie... [more]
XP_012684149.19.300e-1123.74PREDICTED: gamma-aminobutyric acid type B receptor... [more]
XP_002112957.11.600e-1025.00hypothetical protein TRIADDRAFT_56610 [Trichoplax ... [more]
XP_020435211.12.700e-1026.04G-protein-coupled receptor family 3 protein 5 [Het... [more]
XP_004346763.24.600e-1027.78hypothetical protein CAOG_05078 [Capsaspora owczar... [more]
AIT71769.14.600e-1025.49gamma aminobutyric acid type b receptor subunit 2 ... [more]
ELT87875.11.800e-924.44hypothetical protein CAPTEDRAFT_222380 [Capitella ... [more]
GBG30807.11.800e-922.26Metabotropic glutamate receptor-like protein B [Au... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR073ncniR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR097ngnoR097Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G01000.1NO30G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633973gene_10211Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G01000.1NO30G01000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G01000 ID=NO30G01000|Name=NO30G01000|organism=Nannochloropsis oceanica|type=gene|length=2736bp
ATGCAAGCCACCGACACCGATGAGGATGTGGCCATTACCGTGGATTACAA
CCGATCTCACAGCTATGACATCGGTGGGCCCGCACCCATTTGCTGGAAAG
TTGTAAACGGCGTCATGTCTCGCGCCCCGGCCTGCCCCGCCGAGCTCATC
CTGACTTTTAGCGACCCTCCTCCCAATCCGCTGTTCTCCATGCGAGACTA
CATGAGCCACTTTCGGGCAACTATTAATGGACAAGCACTGGGTCTTGTTA
GTTTGACGAGCGCGACGACCGGACTGGCTCATGAAATTTACCATGCCAAC
GTGCACTCCTGCGTGGCCACCGTCGGTTTCTGCAGCCCCTTCATTAGCAA
CACTCCTGGTCTCTCTACACATAGTCCGGAAAAGgtatttattatgtatt
tctttttctcctgtctttcctttttccaccattgtgcatctgtgtgtaga
acttttattttactccagtctcttcttctattccaaacttattccgtcag
CGCCTGAACTTGACGCCGATCCCTTCTAAGCCAGGCTGGTCAACAGCCCT
GATTCCCAATGTCGTACGGCTCGATCCCGGTACCTATACAATTATTGCCC
ATATTTGGCTTGAAACTCGGAAAAATAACGACGTCATCAAGTGGTCGGTG
GCTCAGGCTGTGACGAGgtgagaaatacagatgaagatggagaggtgaag
ggagatattgaaaaaaagaggcttgaaatcacatgagtctaccacagcgt
cggttgctgtcagcaacacgtcctcatttaattttataattccgtccctt
cctcgtttctcccaccactagGGAGGTCCTTCCCCCGAAACACTTCCTGA
CTATTGCCCCCGCCATTACCTACGCCATGGGCGCTATAGTAGCCTTGACA
CTGGCTTTTCTCCTTTTCAATGTGGCAGCGTTGCTTTATTATCGAAAGCA
CAAGATCATTCGTTTCTCTCAAGGAGATATTTTGCAAGgtaagaaagaat
ggaaggaggtagacaagaataaagggatattcagggtggagctgctttag
gggcgcatgtacggcatcgcaacgaatgagttgctcatcttcttctcccg
atagCCATGACACTCTCTAGCATCGTTGCTGTAGGGAGCCTTCCTCTTGC
CGCCGTTCCCTCTACGCCATCGTGCCTTCTCCGTCCTTGGCTACAAATAA
TTCCGCTCAACTTTCTCTTCGGGCTCCTCTTCGGCAAGACCTGGCGGATC
CACCGCTTACTCAACAACAAGCAGCTCAAGGCAATTAAAATTAGGCAATC
TGCCGTCTTCTTCGTCGCCTTTCTTCTCACTCTTCCTGAAATCGCCATCC
ACGGCCTTTACTTCCTCTTGGCCCCTCCCACTTTGTCGGAGAAGACGGTG
CTCAACGAGTTTACCTTCGTCAATACCTGTGCCTCAAACCCCTTCTACAA
ACGCATTTTTGACGCCCTCCACCTAGTTTACGGCGCTTTAATACTTATTC
TTGGCTGTTACGTAGCCCAGAAATCGGCTGCACTCACAACTCTTTTCAAT
GAGgtaagcggtgccattgtctctcgatgtcttaccctatcccattggca
cccgccgtgaaaagacgaccgtgttcttaaacgcgtacgacacctattct
taagataaacgccccagagaatattcgtgacacgcgttccctttttcctt
ccaaaccttcctccataacttacacactcagGGCACCTACATCCTTTTTG
CTATTTACACCTGCTCCATTCTTGCTGTCATTATCGTACCTGCGACTTTC
GCTGTTGCATCGAGCCCTCAGACAGCTTATATTTTGAGGGTGTTGGGTGT
GTGTCTCGCGGCAGCAGGGACAATCGGCGCGATAAATTTGCCTAAGCTGT
TGCTGATTCGCTCGGGTGTCGAAATGTCGTTACAGgtgcgtgtttctaac
ccgctactccatcttccttctccccccatacgtttagcacaatgttataa
taccacggctaaggcaggaaatcacatacactcaccttcttgcactttcc
atacttcataacgctacttccctacttcctcccctaccctctcgcccacc
caccatagGAAAACAAAACTACCGCGGGAGGCAAGACTATGGCCGGCAGC
GCTAAGACGAGCGGCAACGTCTCGGGTGGAAAAGACAGTGGAAGTACTCC
CACCATCATCCTGGTCAAGAGCCATATTCCTACTTCCGTCTTTAGTAAAA
TGCAAGACACGTTTGTTGCGATGAAAAAAGTGAAAGACAGGCAAGAGCAG
GGGTATGCGCTTGTGTCGTCGGAGTGGTCCGAATGCGTGGACGAAGTCAA
AGGATTGACGGACATTTTGGGGCGGTGTGCGGTGGAGAATGGAGGAGGAG
CAGCGGGAACGGGAAAGGAGGGTAAGGGAAGTGCAAGGGTGGCACCTTCC
TCATAAAAGAGTAATGCCCTTGTTCGAAAGTGGGTGTCTCACAGACTTAC
AGTAATGGAAGTAGGGAGGGAGGGTGAGGGAAGAGGATAGGGAAAGAATA
CGCAGGTGGTGCCGTGGTTTGGATGTCGTTGGATCAGAAAGAGGAGTGTT
GATACAATTACAAAAGATCGATGCAAAAGAAAGACATGTGCACGTGGGGC
GACAGCAATAGGAGGCTGCTGGTATGAGCTCTCTTTCCTCCTCCGGCCTT
AGCACCTTCGAACTATTTTCAAAGCAAAAGGGGGGA
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protein sequence of NO30G01000.1

>NO30G01000.1-protein ID=NO30G01000.1-protein|Name=NO30G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MQATDTDEDVAITVDYNRSHSYDIGGPAPICWKVVNGVMSRAPACPAELI
LTFSDPPPNPLFSMRDYMSHFRATINGQALGLVSLTSATTGLAHEIYHAN
VHSCVATVGFCSPFISNTPGLSTHSPEKRLNLTPIPSKPGWSTALIPNVV
RLDPGTYTIIAHIWLETRKNNDVIKWSVAQAVTREVLPPKHFLTIAPAIT
YAMGAIVALTLAFLLFNVAALLYYRKHKIIRFSQGDILQAMTLSSIVAVG
SLPLAAVPSTPSCLLRPWLQIIPLNFLFGLLFGKTWRIHRLLNNKQLKAI
KIRQSAVFFVAFLLTLPEIAIHGLYFLLAPPTLSEKTVLNEFTFVNTCAS
NPFYKRIFDALHLVYGALILILGCYVAQKSAALTTLFNEGTYILFAIYTC
SILAVIIVPATFAVASSPQTAYILRVLGVCLAAAGTIGAINLPKLLLIRS
GVEMSLQENKTTAGGKTMAGSAKTSGNVSGGKDSGSTPTIILVKSHIPTS
VFSKMQDTFVAMKKVKDRQEQGYALVSSEWSECVDEVKGLTDILGRCAVE
NGGGAAGTGKEGKGSARVAPSS*
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Synonyms
Publications