NO30G01000.1, NO30G01000.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO30G01000.1
Unique Name	NO30G01000.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1999
Alignment location	chr30:369603..372338 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr30	genome	chr30:369603..372338 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO30G01000.1 vs.
Match: KJE98253.1 (hypothetical protein CAOG_008244 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 89.7 bits (221), Expect = 3.100e-14
Identity = 71/302 (23.51%), Postives = 136/302 (45.03%), Query Frame = 0

Query:  177 SVAQAVTREVLPPKHFLTIAPAITYAMGAIVALTLAFLLFNVAALLYYRKHKIIRFSQGDILQAMTLSSIVAVGSLPLAAVPSTPS--------------CLLRPWLQIIPLNFLFGLLFGKTWRIHRLLNNKQLKAIKIRQSAVFFVAFLLTLPEIAIHGLYFLLAPPTLSEKTVLNEF---TFVNTCASNPFYKRIFDALHLVYGALILILGCYVAQKSAALTTLFNEGTYILFAIYTCSILAVIIVPATFAVASSPQTAYILRVLGVCLAAAGTIGAINLPKLLLIRSGVEMSLQENKT 462
            +V+  +T  +  P    T++ +   A+  + +L     +     L  +  H  IR S   +LQ M  S+++   ++ L  V S                 C   PWL  +  + ++G +  K WRIH++ NN+  + I +    +     +  + +I ++ ++  + P  L    + +     T  + C S+ F   I+ A++L +   +L+ G Y+A     +   FNE   + FAIY  + ++ II+P   A+ +S    Y++   G  LA   TI  I +PK++L+ SG + S+Q   +
Sbjct:  261 TVSNGLTYPICVPAELSTVSTSAFIAVQVVTSLCAVGTIVIFVILRRHLSHSSIRASSPVLLQFMLASTVLVYAAIFLMGVDSGSDDNSLVSLSTVASNICRAIPWLLGLGFDLVYGAMLAKAWRIHKIFNNRLRRRIMLTDGNLIKHIVIFAMHDIILNAVWVGVDPLGLEYHVLSSSSSGTTVTSQCRSDNF--GIYLAIYLAFKGAVLLAGIYLAIACRNVADQFNESKQLGFAIYNLTFISCIIIPLVLAIQASATVVYLIAAFGTLLALVMTIAIIFVPKIVLVYSGADTSVQNTSS 560

The following BLAST results are available for this feature:

BLAST of NO30G01000.1 vs.

BLAST of NO30G01000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
KJE98253.1	3.100e-14	23.51	hypothetical protein CAOG_008244 [Capsaspora owcza...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO30G01000	NO30G01000	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO30G01000.1	NO30G01000.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO30G01000.1.cds1	NO30G01000.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01000.1.cds2	NO30G01000.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01000.1.cds3	NO30G01000.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01000.1.cds4	NO30G01000.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01000.1.cds5	NO30G01000.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G01000.1.cds6	NO30G01000.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr30:369603..372338-
coding sequence from alignment at chr30:369603..372338-

mRNA sequence

>NO30G01000.1 ID=NO30G01000.1|Name=NO30G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1999bp
ATGCAAGCCACCGACACCGATGAGGATGTGGCCATTACCGTGGATTACAA
CCGATCTCACAGCTATGACATCGGTGGGCCCGCACCCATTTGCTGGAAAG
TTGTAAACGGCGTCATGTCTCGCGCCCCGGCCTGCCCCGCCGAGCTCATC
CTGACTTTTAGCGACCCTCCTCCCAATCCGCTGTTCTCCATGCGAGACTA
CATGAGCCACTTTCGGGCAACTATTAATGGACAAGCACTGGGTCTTGTTA
GTTTGACGAGCGCGACGACCGGACTGGCTCATGAAATTTACCATGCCAAC
GTGCACTCCTGCGTGGCCACCGTCGGTTTCTGCAGCCCCTTCATTAGCAA
CACTCCTGGTCTCTCTACACATAGTCCGGAAAAGCGCCTGAACTTGACGC
CGATCCCTTCTAAGCCAGGCTGGTCAACAGCCCTGATTCCCAATGTCGTA
CGGCTCGATCCCGGTACCTATACAATTATTGCCCATATTTGGCTTGAAAC
TCGGAAAAATAACGACGTCATCAAGTGGTCGGTGGCTCAGGCTGTGACGA
GGGAGGTCCTTCCCCCGAAACACTTCCTGACTATTGCCCCCGCCATTACC
TACGCCATGGGCGCTATAGTAGCCTTGACACTGGCTTTTCTCCTTTTCAA
TGTGGCAGCGTTGCTTTATTATCGAAAGCACAAGATCATTCGTTTCTCTC
AAGGAGATATTTTGCAAGCCATGACACTCTCTAGCATCGTTGCTGTAGGG
AGCCTTCCTCTTGCCGCCGTTCCCTCTACGCCATCGTGCCTTCTCCGTCC
TTGGCTACAAATAATTCCGCTCAACTTTCTCTTCGGGCTCCTCTTCGGCA
AGACCTGGCGGATCCACCGCTTACTCAACAACAAGCAGCTCAAGGCAATT
AAAATTAGGCAATCTGCCGTCTTCTTCGTCGCCTTTCTTCTCACTCTTCC
TGAAATCGCCATCCACGGCCTTTACTTCCTCTTGGCCCCTCCCACTTTGT
CGGAGAAGACGGTGCTCAACGAGTTTACCTTCGTCAATACCTGTGCCTCA
AACCCCTTCTACAAACGCATTTTTGACGCCCTCCACCTAGTTTACGGCGC
TTTAATACTTATTCTTGGCTGTTACGTAGCCCAGAAATCGGCTGCACTCA
CAACTCTTTTCAATGAGGGCACCTACATCCTTTTTGCTATTTACACCTGC
TCCATTCTTGCTGTCATTATCGTACCTGCGACTTTCGCTGTTGCATCGAG
CCCTCAGACAGCTTATATTTTGAGGGTGTTGGGTGTGTGTCTCGCGGCAG
CAGGGACAATCGGCGCGATAAATTTGCCTAAGCTGTTGCTGATTCGCTCG
GGTGTCGAAATGTCGTTACAGGAAAACAAAACTACCGCGGGAGGCAAGAC
TATGGCCGGCAGCGCTAAGACGAGCGGCAACGTCTCGGGTGGAAAAGACA
GTGGAAGTACTCCCACCATCATCCTGGTCAAGAGCCATATTCCTACTTCC
GTCTTTAGTAAAATGCAAGACACGTTTGTTGCGATGAAAAAAGTGAAAGA
CAGGCAAGAGCAGGGGTATGCGCTTGTGTCGTCGGAGTGGTCCGAATGCG
TGGACGAAGTCAAAGGATTGACGGACATTTTGGGGCGGTGTGCGGTGGAG
AATGGAGGAGGAGCAGCGGGAACGGGAAAGGAGGGTAAGGGAAGTGCAAG
GGTGGCACCTTCCTCATAAAAGAGTAATGCCCTTGTTCGAAAGTGGGTGT
CTCACAGACTTACAGTAATGGAAGTAGGGAGGGAGGGTGAGGGAAGAGGA
TAGGGAAAGAATACGCAGGTGGTGCCGTGGTTTGGATGTCGTTGGATCAG
AAAGAGGAGTGTTGATACAATTACAAAAGATCGATGCAAAAGAAAGACAT
GTGCACGTGGGGCGACAGCAATAGGAGGCTGCTGGTATGAGCTCTCTTTC
CTCCTCCGGCCTTAGCACCTTCGAACTATTTTCAAAGCAAAAGGGGGGA

protein sequence of NO30G01000.1

>NO30G01000.1-protein ID=NO30G01000.1-protein|Name=NO30G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MQATDTDEDVAITVDYNRSHSYDIGGPAPICWKVVNGVMSRAPACPAELI
LTFSDPPPNPLFSMRDYMSHFRATINGQALGLVSLTSATTGLAHEIYHAN
VHSCVATVGFCSPFISNTPGLSTHSPEKRLNLTPIPSKPGWSTALIPNVV
RLDPGTYTIIAHIWLETRKNNDVIKWSVAQAVTREVLPPKHFLTIAPAIT
YAMGAIVALTLAFLLFNVAALLYYRKHKIIRFSQGDILQAMTLSSIVAVG
SLPLAAVPSTPSCLLRPWLQIIPLNFLFGLLFGKTWRIHRLLNNKQLKAI
KIRQSAVFFVAFLLTLPEIAIHGLYFLLAPPTLSEKTVLNEFTFVNTCAS
NPFYKRIFDALHLVYGALILILGCYVAQKSAALTTLFNEGTYILFAIYTC
SILAVIIVPATFAVASSPQTAYILRVLGVCLAAAGTIGAINLPKLLLIRS
GVEMSLQENKTTAGGKTMAGSAKTSGNVSGGKDSGSTPTIILVKSHIPTS
VFSKMQDTFVAMKKVKDRQEQGYALVSSEWSECVDEVKGLTDILGRCAVE
NGGGAAGTGKEGKGSARVAPSS*

mRNA from alignment at chr30:369603..372338-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO30G01000.1 ID=NO30G01000.1|Name=NO30G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=2736bp|location=Sequence derived from alignment at chr30:369603..372338- (Nannochloropsis oceanica)
ATGCAAGCCACCGACACCGATGAGGATGTGGCCATTACCGTGGATTACAA
CCGATCTCACAGCTATGACATCGGTGGGCCCGCACCCATTTGCTGGAAAG
TTGTAAACGGCGTCATGTCTCGCGCCCCGGCCTGCCCCGCCGAGCTCATC
CTGACTTTTAGCGACCCTCCTCCCAATCCGCTGTTCTCCATGCGAGACTA
CATGAGCCACTTTCGGGCAACTATTAATGGACAAGCACTGGGTCTTGTTA
GTTTGACGAGCGCGACGACCGGACTGGCTCATGAAATTTACCATGCCAAC
GTGCACTCCTGCGTGGCCACCGTCGGTTTCTGCAGCCCCTTCATTAGCAA
CACTCCTGGTCTCTCTACACATAGTCCGGAAAAGGTATTTATTATGTATT
TCTTTTTCTCCTGTCTTTCCTTTTTCCACCATTGTGCATCTGTGTGTAGA
ACTTTTATTTTACTCCAGTCTCTTCTTCTATTCCAAACTTATTCCGTCAG
CGCCTGAACTTGACGCCGATCCCTTCTAAGCCAGGCTGGTCAACAGCCCT
GATTCCCAATGTCGTACGGCTCGATCCCGGTACCTATACAATTATTGCCC
ATATTTGGCTTGAAACTCGGAAAAATAACGACGTCATCAAGTGGTCGGTG
GCTCAGGCTGTGACGAGGTGAGAAATACAGATGAAGATGGAGAGGTGAAG
GGAGATATTGAAAAAAAGAGGCTTGAAATCACATGAGTCTACCACAGCGT
CGGTTGCTGTCAGCAACACGTCCTCATTTAATTTTATAATTCCGTCCCTT
CCTCGTTTCTCCCACCACTAGGGAGGTCCTTCCCCCGAAACACTTCCTGA
CTATTGCCCCCGCCATTACCTACGCCATGGGCGCTATAGTAGCCTTGACA
CTGGCTTTTCTCCTTTTCAATGTGGCAGCGTTGCTTTATTATCGAAAGCA
CAAGATCATTCGTTTCTCTCAAGGAGATATTTTGCAAGGTAAGAAAGAAT
GGAAGGAGGTAGACAAGAATAAAGGGATATTCAGGGTGGAGCTGCTTTAG
GGGCGCATGTACGGCATCGCAACGAATGAGTTGCTCATCTTCTTCTCCCG
ATAGCCATGACACTCTCTAGCATCGTTGCTGTAGGGAGCCTTCCTCTTGC
CGCCGTTCCCTCTACGCCATCGTGCCTTCTCCGTCCTTGGCTACAAATAA
TTCCGCTCAACTTTCTCTTCGGGCTCCTCTTCGGCAAGACCTGGCGGATC
CACCGCTTACTCAACAACAAGCAGCTCAAGGCAATTAAAATTAGGCAATC
TGCCGTCTTCTTCGTCGCCTTTCTTCTCACTCTTCCTGAAATCGCCATCC
ACGGCCTTTACTTCCTCTTGGCCCCTCCCACTTTGTCGGAGAAGACGGTG
CTCAACGAGTTTACCTTCGTCAATACCTGTGCCTCAAACCCCTTCTACAA
ACGCATTTTTGACGCCCTCCACCTAGTTTACGGCGCTTTAATACTTATTC
TTGGCTGTTACGTAGCCCAGAAATCGGCTGCACTCACAACTCTTTTCAAT
GAGGTAAGCGGTGCCATTGTCTCTCGATGTCTTACCCTATCCCATTGGCA
CCCGCCGTGAAAAGACGACCGTGTTCTTAAACGCGTACGACACCTATTCT
TAAGATAAACGCCCCAGAGAATATTCGTGACACGCGTTCCCTTTTTCCTT
CCAAACCTTCCTCCATAACTTACACACTCAGGGCACCTACATCCTTTTTG
CTATTTACACCTGCTCCATTCTTGCTGTCATTATCGTACCTGCGACTTTC
GCTGTTGCATCGAGCCCTCAGACAGCTTATATTTTGAGGGTGTTGGGTGT
GTGTCTCGCGGCAGCAGGGACAATCGGCGCGATAAATTTGCCTAAGCTGT
TGCTGATTCGCTCGGGTGTCGAAATGTCGTTACAGGTGCGTGTTTCTAAC
CCGCTACTCCATCTTCCTTCTCCCCCCATACGTTTAGCACAATGTTATAA
TACCACGGCTAAGGCAGGAAATCACATACACTCACCTTCTTGCACTTTCC
ATACTTCATAACGCTACTTCCCTACTTCCTCCCCTACCCTCTCGCCCACC
CACCATAGGAAAACAAAACTACCGCGGGAGGCAAGACTATGGCCGGCAGC
GCTAAGACGAGCGGCAACGTCTCGGGTGGAAAAGACAGTGGAAGTACTCC
CACCATCATCCTGGTCAAGAGCCATATTCCTACTTCCGTCTTTAGTAAAA
TGCAAGACACGTTTGTTGCGATGAAAAAAGTGAAAGACAGGCAAGAGCAG
GGGTATGCGCTTGTGTCGTCGGAGTGGTCCGAATGCGTGGACGAAGTCAA
AGGATTGACGGACATTTTGGGGCGGTGTGCGGTGGAGAATGGAGGAGGAG
CAGCGGGAACGGGAAAGGAGGGTAAGGGAAGTGCAAGGGTGGCACCTTCC
TCATAAAAGAGTAATGCCCTTGTTCGAAAGTGGGTGTCTCACAGACTTAC
AGTAATGGAAGTAGGGAGGGAGGGTGAGGGAAGAGGATAGGGAAAGAATA
CGCAGGTGGTGCCGTGGTTTGGATGTCGTTGGATCAGAAAGAGGAGTGTT
GATACAATTACAAAAGATCGATGCAAAAGAAAGACATGTGCACGTGGGGC
GACAGCAATAGGAGGCTGCTGGTATGAGCTCTCTTTCCTCCTCCGGCCTT
AGCACCTTCGAACTATTTTCAAAGCAAAAGGGGGGA

Coding sequence (CDS) from alignment at chr30:369603..372338-

>NO30G01000.1 ID=NO30G01000.1|Name=NO30G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr30:369603..372338- (Nannochloropsis oceanica)
ATGCAAGCCACCGACACCGATGAGGATGTGGCCATTACCGTGGATTACAA
CCGATCTCACAGCTATGACATCGGTGGGCCCGCACCCATTTGCTGGAAAG
TTGTAAACGGCGTCATGTCTCGCGCCCCGGCCTGCCCCGCCGAGCTCATC
CTGACTTTTAGCGACCCTCCTCCCAATCCGCTGTTCTCCATGCGAGACTA
CATGAGCCACTTTCGGGCAACTATTAATGGACAAGCACTGGGTCTTGTTA
GTTTGACGAGCGCGACGACCGGACTGGCTCATGAAATTTACCATGCCAAC
GTGCACTCCTGCGTGGCCACCGTCGGTTTCTGCAGCCCCTTCATTAGCAA
CACTCCTGGTCTCTCTACACATAGTCCGGAAAAGCGCCTGAACTTGACGC
CGATCCCTTCTAAGCCAGGCTGGTCAACAGCCCTGATTCCCAATGTCGTA
CGGCTCGATCCCGGTACCTATACAATTATTGCCCATATTTGGCTTGAAAC
TCGGAAAAATAACGACGTCATCAAGTGGTCGGTGGCTCAGGCTGTGACGA
GGGAGGTCCTTCCCCCGAAACACTTCCTGACTATTGCCCCCGCCATTACC
TACGCCATGGGCGCTATAGTAGCCTTGACACTGGCTTTTCTCCTTTTCAA
TGTGGCAGCGTTGCTTTATTATCGAAAGCACAAGATCATTCGTTTCTCTC
AAGGAGATATTTTGCAAGCCATGACACTCTCTAGCATCGTTGCTGTAGGG
AGCCTTCCTCTTGCCGCCGTTCCCTCTACGCCATCGTGCCTTCTCCGTCC
TTGGCTACAAATAATTCCGCTCAACTTTCTCTTCGGGCTCCTCTTCGGCA
AGACCTGGCGGATCCACCGCTTACTCAACAACAAGCAGCTCAAGGCAATT
AAAATTAGGCAATCTGCCGTCTTCTTCGTCGCCTTTCTTCTCACTCTTCC
TGAAATCGCCATCCACGGCCTTTACTTCCTCTTGGCCCCTCCCACTTTGT
CGGAGAAGACGGTGCTCAACGAGTTTACCTTCGTCAATACCTGTGCCTCA
AACCCCTTCTACAAACGCATTTTTGACGCCCTCCACCTAGTTTACGGCGC
TTTAATACTTATTCTTGGCTGTTACGTAGCCCAGAAATCGGCTGCACTCA
CAACTCTTTTCAATGAGGGCACCTACATCCTTTTTGCTATTTACACCTGC
TCCATTCTTGCTGTCATTATCGTACCTGCGACTTTCGCTGTTGCATCGAG
CCCTCAGACAGCTTATATTTTGAGGGTGTTGGGTGTGTGTCTCGCGGCAG
CAGGGACAATCGGCGCGATAAATTTGCCTAAGCTGTTGCTGATTCGCTCG
GGTGTCGAAATGTCGTTACAGGAAAACAAAACTACCGCGGGAGGCAAGAC
TATGGCCGGCAGCGCTAAGACGAGCGGCAACGTCTCGGGTGGAAAAGACA
GTGGAAGTACTCCCACCATCATCCTGGTCAAGAGCCATATTCCTACTTCC
GTCTTTAGTAAAATGCAAGACACGTTTGTTGCGATGAAAAAAGTGAAAGA
CAGGCAAGAGCAGGGGTATGCGCTTGTGTCGTCGGAGTGGTCCGAATGCG
TGGACGAAGTCAAAGGATTGACGGACATTTTGGGGCGGTGTGCGGTGGAG
AATGGAGGAGGAGCAGCGGGAACGGGAAAGGAGGGTAAGGGAAGTGCAAG
GGTGGCACCTTCCTCATAA

Synonyms

Publications