NO30G00960, NO30G00960 (gene) Nannochloropsis oceanica

Overview
NameNO30G00960
Unique NameNO30G00960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3905
Alignment locationchr30:356018..359922 -

Link to JBrowse

Properties
Property NameValue
DescriptionCysteinyl-tRNA Synthetase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:356018..359922 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
GO:0006423cysteinyl-tRNA aminoacylation
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0016874ligase activity
GO:0005524ATP binding
GO:0004817cysteine-tRNA ligase activity
GO:0004812aminoacyl-tRNA ligase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR009080tRNAsynth_1a_anticodon-bd
IPR032678tRNA-synt_1_cat_dom
IPR024909Cys-tRNA/MSH_ligase
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
BLAST of NO30G00960 vs. NCBI_GenBank
Match: CBJ32684.1 (Cysteinyl-tRNA Synthetase [Ectocarpus siliculosus])

HSP 1 Score: 406.8 bits (1044), Expect = 9.500e-110
Identity = 222/459 (48.37%), Postives = 277/459 (60.35%), Query Frame = 0
Query:   27 MSASQGALAASAGPSDKRQEHDFALWKRTKDEALEPSWSSPWGRGRPGWHIECSVMASDTFQELSGGRMDIHSGGIDLRFPHHENEVAQAEACLGCHQWVNYWMHAGHLHIKGFKMSKSLKNFITIQEALQTHTARQIRFCFLLSRYNAPMDYGDGTMSNAAALESYFAEFFHNIKAFLRKAGVSQTQHMGVKEKELFHRLQEAKLEIRAAFADDFDIPLALSKLQELVRATNRYLEDPSPA-----SLLVRAVAEYTTWVFKCLGLASGSEGELGFSSPLRGGIG---EGGGXXGGREEVMAPVLDVVASFRDALRAAAIEKDAGKVLELCDSLRDSLLPPLGVRLEDKDGGSIWKLVDPSVLMKEKAQXXXXXXXXXXXXXXXXXXXXXXXXXAQIPPSVYFQRTQGDK----FSGYDPEGFPTHDKEGNPLSKGVLKKLGKEWEGHKKAYAKAVGK 474
            M+  +GAL+  AG  DKR   DFALWKR+++   EPSW SPWG GRPGWHIECSVMAS TF+ +  G MDIHSGG+DL+FPHH+NE+AQAEA   C QWVNY++H GHLHIKGFKMSKSLKNFITI++ALQ ++ RQIR  FLL +YN PMDYGD  MS A A E  F+EFFHN+KA LR+            E  L   L +AK E++    DD D P A+  LQELV+  N+Y+E    A     +  VR  AEY T +FK  GLAS     LGFS     G+G    G G    RE ++ PVLDV++ FRD +R      D   VL  CD +R+ LLP +GVRLEDK   ++WKL DP+VL +E+ Q                          +IP S YF+  +G+     ++ +D  G PTHD  G P+ K   KK+ KEWE   K Y  A+ K
Sbjct:  209 MAEGEGALSLGAG--DKRSSGDFALWKRSREG--EPSWPSPWGDGRPGWHIECSVMASATFEGMGDGTMDIHSGGVDLKFPHHDNEMAQAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALQENSPRQIRLLFLLHKYNTPMDYGDDAMSGALAAERTFSEFFHNVKAALRRTTARDPARTKEPELALMSSLSDAKKEVKKCLCDDVDTPGAMGALQELVKNVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKVFGLASPGPA-LGFSQVGDAGVGGDASGEGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDQAVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGEDGKALYTQFDDNGVPTHDAAGEPIVKD--KKVKKEWEAQNKLYNNALAK 660          
BLAST of NO30G00960 vs. NCBI_GenBank
Match: OQR80790.1 (cysteinyl-tRNA synthetase [Achlya hypogyna])

HSP 1 Score: 401.7 bits (1031), Expect = 3.100e-108
Identity = 244/452 (53.98%), Postives = 308/452 (68.14%), Query Frame = 0
Query:   30 SQGALAASAGPSDKRQEHDFALWKRTKDEALEPSWSSPWGRGRPGWHIECSVMASDTFQELSGGRMDIHSGGIDLRFPHHENEVAQAEACLGCHQWVNYWMHAGHLHIKGFKMSKSLKNFITIQEALQTHTARQIRFCFLLSRYNAPMDYGDGTMSNAAALESYFAEFFHNIKAFLRKAGVSQTQHMGVKEKELFHRLQEAKLEIRAAFADDFDIPLALSKLQELVRATNRYLEDPSP-ASLLVRAVAEYTTWVFKCLGLASGSEGELGFSSPLRGGIGEGGGXXGGREEVMAPVLDVVASFRDALRAAAIEKD-----AGKVLELCDSLRDSLLPPLGVRLEDKDG-GSIWKLVDPSVLMKE----KAQXXXXXXXXXXXXXXXXXXXXXXXXXAQIPPSVYFQRTQGDKFSGY-DPEGFPTHDKEGNPLSKGVLKKLGKEWEGHKKAYAK 470
            ++G  A S G SDKR  +DFALWK++K    EP WSSPWG GRPGWHIECS MASD  ++L GGR+DIH+GGIDLRFPHH+NE+AQ+EA     QW+NY++H GHL+I+G KMSKSLKNF+ I EAL  ++ RQ+RF FLL +YN PMDY D TM  A  ++++FA FF N+K  LR+ GV QTQ  G  EK+L  R  E K ++  A ADD + PLAL  LQEL +  NRYL    P  S+ +RA AEY T + +  GL   +  ++GF  PL        G  G +E ++ PVLD+ A FRD +RAAA+ KD     A  ++ELCDS+RD+ LP  GVRLED+ G  S+WKL +   L++E    +  XXXXXXXXXXXXXXXXXXXXXXXXXAQI P   F + Q DK+S + D +G PTH  +G P+SKG+LKKL KE +  KK Y K
Sbjct:  231 AEGEGALSVGASDKRNANDFALWKKSKKG--EPFWSSPWGEGRPGWHIECSAMASDALKDLEGGRIDIHTGGIDLRFPHHDNEIAQSEAYFNFEQWINYFVHTGHLNIEGLKMSKSLKNFVKINEALALNSPRQLRFLFLLHKYNVPMDYNDNTMDEAVVVDTFFANFFQNVKVALREIGVEQTQKWGPAEKKLGQRTLETKEKVHQALADDLNTPLALQLLQELAKDVNRYLAAGVPHVSMCIRAAAEYITHILRVFGLIPDAT-DIGF--PL--------GASGDQETILTPVLDIFAEFRDQVRAAALSKDPSQNLAKTLMELCDSVRDTKLPYAGVRLEDRAGSSSVWKLGNKDELLEEIRVKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAQIHPKDLF-KLQTDKYSAFNDADGLPTHTVDGEPVSKGLLKKLAKEQDKQKKLYDK 668          
BLAST of NO30G00960 vs. NCBI_GenBank
Match: XP_012208864.1 (cysteinyl-tRNA synthetase [Saprolegnia parasitica CBS 223.65] >KDO20407.1 cysteinyl-tRNA synthetase [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 395.2 bits (1014), Expect = 2.900e-106
Identity = 239/450 (53.11%), Postives = 305/450 (67.78%), Query Frame = 0
Query:   30 SQGALAASAGPSDKRQEHDFALWKRTKDEALEPSWSSPWGRGRPGWHIECSVMASDTFQELSGGRMDIHSGGIDLRFPHHENEVAQAEACLGCHQWVNYWMHAGHLHIKGFKMSKSLKNFITIQEALQTHTARQIRFCFLLSRYNAPMDYGDGTMSNAAALESYFAEFFHNIKAFLRKAGVSQTQHMGVKEKELFHRLQEAKLEIRAAFADDFDIPLALSKLQELVRATNRYLEDPSP-ASLLVRAVAEYTTWVFKCLGLASGSEGELGFSSPLRGGIGEGGGXXGGREEVMAPVLDVVASFRDALRAAAIEKD---AGKVLELCDSLRDSLLPPLGVRLEDK-DGGSIWKLVDPSVLMKE----KAQXXXXXXXXXXXXXXXXXXXXXXXXXAQIPPSVYFQRTQGDKFSGY-DPEGFPTHDKEGNPLSKGVLKKLGKEWEGHKKAYAK 470
            ++G  A S G SDKR  +DFALWK++K    EP W+SPWG GRPGWHIECS MASD  ++L+GGR+DIH+GGIDLRFPHH+NE+AQ+EA     QW+NY++H GHL+I+G KMSKSLKNF+ I EAL  ++ RQ+RF FLL +YN PMDY D TM  A  ++S+FA FF N+K  LR+  V QTQ  GV EK+L  R  E K ++ AA ADD + PLAL  LQEL +  NRYL    P  S+ +RA AEY T + +  GL   +  ++GF  PL        G  G +E ++ PVLD+ A FRD +R AA+ KD   A  ++ELCDS+RD+ LP  GVRLED+ +  S+WKL +   L++E       XXXXXXXXXXXXXXXXXXXXXXXX A + P   F + Q DK+S + + +G PTH  +G P+SKG LKKL KE E  KK + K
Sbjct:  237 AEGEGALSVGASDKRNANDFALWKKSKKG--EPFWASPWGEGRPGWHIECSAMASDALKDLAGGRIDIHTGGIDLRFPHHDNEIAQSEAYFNFEQWINYFVHTGHLNIEGLKMSKSLKNFVKINEALAMNSPRQLRFLFLLHKYNVPMDYNDNTMDEAVGVDSFFANFFQNVKVALREINVDQTQKWGVHEKKLGARTLEIKEKVHAALADDLNTPLALQLLQELAKEVNRYLALNIPHVSMCLRAAAEYITHMLRVFGLIPDAT-DIGF--PL--------GASGDQETILTPVLDIFAEFRDQVRTAALSKDPNLAKLIMELCDSVRDAKLPHAGVRLEDRANASSVWKLANKDELLEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAGVHPKDMF-KLQKDKYSAFNEADGLPTHTVDGEPISKGALKKLAKEQEKQKKLFDK 672          
BLAST of NO30G00960 vs. NCBI_GenBank
Match: XP_008618159.1 (cysteinyl-tRNA synthetase [Saprolegnia diclina VS20] >EQC28511.1 cysteinyl-tRNA synthetase [Saprolegnia diclina VS20])

HSP 1 Score: 393.3 bits (1009), Expect = 1.100e-105
Identity = 239/449 (53.23%), Postives = 304/449 (67.71%), Query Frame = 0
Query:   30 SQGALAASAGPSDKRQEHDFALWKRTKDEALEPSWSSPWGRGRPGWHIECSVMASDTFQELSGGRMDIHSGGIDLRFPHHENEVAQAEACLGCHQWVNYWMHAGHLHIKGFKMSKSLKNFITIQEALQTHTARQIRFCFLLSRYNAPMDYGDGTMSNAAALESYFAEFFHNIKAFLRKAGVSQTQHMGVKEKELFHRLQEAKLEIRAAFADDFDIPLALSKLQELVRATNRYLEDPSP-ASLLVRAVAEYTTWVFKCLGLASGSEGELGFSSPLRGGIGEGGGXXGGREEVMAPVLDVVASFRDALRAAAIEKD---AGKVLELCDSLRDSLLPPLGVRLEDK-DGGSIWKLVDPSVLMKEKAQXXXXXXXXXXXXXXXXXXXXXXXXXAQIPPSVY---FQRTQGDKFSGY-DPEGFPTHDKEGNPLSKGVLKKLGKEWEGHKKAYAK 470
            ++G  A S G SDKR  +DFALWK++K    EP W+SPWG GRPGWHIECS MASD  ++L+GGR+DIH+GGIDLRFPHH+NE+AQ+EA     QW+NY++H GHL+I+G KMSKSLKNF+ I EAL  ++ RQ+RF FLL +YN PMDY D TM  A  ++S+F  FF N+K  LR+  V QTQ  GV EK+L  R  E K ++ AA ADD + PLAL  LQEL +  NRYL    P  S+ +RA AEY T + +  GL   +  ++GF  PL        G  G +E ++ PVLD+ A FRD +RAAA+ KD   A  V+ELCDS+RD+ LP  GVRLED+ +  S+WKL +   L++E   XXXXXXXXXXXXXXXXXXXXXXXXX      V+     + Q +K+S + + +G PTH  +G P+SKG LKKL KE E  KK Y K
Sbjct:  237 AEGEGALSVGASDKRNANDFALWKKSKKG--EPFWASPWGEGRPGWHIECSAMASDALKDLAGGRIDIHTGGIDLRFPHHDNEIAQSEAYFNFEQWINYFIHTGHLNIEGLKMSKSLKNFVKINEALTMNSPRQLRFLFLLHKYNVPMDYNDNTMDEAVGVDSFFTNFFQNVKVALREINVDQTQKWGVHEKKLGARTLEIKEKVHAALADDLNTPLALQLLQELAKEVNRYLALNIPHVSMCLRAAAEYITHMLRVFGLIPDAM-DVGF--PL--------GASGDQETILTPVLDIFAEFRDQVRAAALSKDPNLAKLVMELCDSVRDAKLPHAGVRLEDRANASSVWKLANKDELLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHPKDMFKLQKNKYSAFNEADGLPTHTVDGEPVSKGALKKLAKEQEKQKKLYDK 672          
BLAST of NO30G00960 vs. NCBI_GenBank
Match: XP_008876440.1 (cysteine-tRNA ligase [Aphanomyces invadans] >ETV94849.1 cysteine-tRNA ligase [Aphanomyces invadans])

HSP 1 Score: 393.3 bits (1009), Expect = 1.100e-105
Identity = 234/471 (49.68%), Postives = 304/471 (64.54%), Query Frame = 0
Query:   16 ATGSTPQKIITMSASQGALAA------SAGPSDKRQEHDFALWKRTKDEALEPSWSSPWGRGRPGWHIECSVMASDTFQELSGGRMDIHSGGIDLRFPHHENEVAQAEACLGCHQWVNYWMHAGHLHIKGFKMSKSLKNFITIQEALQTHTARQIRFCFLLSRYNAPMDYGDGTMSNAAALESYFAEFFHNIKAFLRKAGVSQTQHMGVKEKELFHRLQEAKLEIRAAFADDFDIPLALSKLQELVRATNRYL-EDPSPASLLVRAVAEYTTWVFKCLGLASGSEGELGFSSPLRGGIGEGGGXXGGREEVMAPVLDVVASFRDALRAAAIEKDAG-----KVLELCDSLRDSLLPPLGVRLEDKDGG-SIWKLVDPSVLMKE----KAQXXXXXXXXXXXXXXXXXXXXXXXXXAQIPPSVYFQRTQGDKFSGYDPEGFPTHDKEGNPLSKGVLKKLGKEWEGHKKAYAK 470
            A G    K++  +  Q  L A      S G SDKR  +DFALWK++K    EP W SPWG GRPGWHIECS MASD  + L GGR+DIH+GG+DLRFPHH+NE+AQ+EA     QW+NY++H GHL+I+G KMSKSLKNF+ I +AL  +T RQ+RF FLL +YN PMDY D TM  A  ++++F++FF N+KA LR+ G+ Q+Q     EK L   + + K ++  A ADD D PLAL  LQEL +  NRY+   PSP S+ +R+ AEY T + +  GL   S G++GF  PL G         GG+EE +APVLD+   FRD +RA     D        ++ LCDS+RDS LP  GVRLED+ GG S+WKL D   L+ E    + + XXXXXXXXXXXXXXXXXXXXXX  AQI P+  F+     ++S ++ +G PT    G P++K +LKKL KE + H+K Y K
Sbjct:  217 AKGKNYGKLVPENVGQSELLAEGEGSLSVGASDKRNGNDFALWKKSKRG--EPFWMSPWGEGRPGWHIECSAMASDALKHLEGGRIDIHTGGVDLRFPHHDNEIAQSEAYFDFEQWINYFIHTGHLNIEGLKMSKSLKNFVKINQALVHNTPRQLRFLFLLHKYNVPMDYNDNTMDEAVGVDAFFSKFFQNVKATLRETGIEQSQKWTAAEKALGKAVLDTKEKVHQALADDLDTPLALRLLQELAKDVNRYVASSPSPVSMAIRSAAEYITCMLRIFGLIPNSSGDIGF--PLEGA-------AGGQEETLAPVLDIFTEFRDEVRAVLFNSDPSVDLKKTLMALCDSVRDSKLPHAGVRLEDRSGGKSVWKLADKDELLAEIKAKEDEKXXXXXXXXXXXXXXXXXXXXXXERAQIHPTDLFK--SSPEYSAFNEQGLPTLLASGEPVAKSLLKKLAKEQDKHQKLYDK 674          
BLAST of NO30G00960 vs. NCBI_GenBank
Match: XP_002178673.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50338.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 390.6 bits (1002), Expect = 7.000e-105
Identity = 238/435 (54.71%), Postives = 296/435 (68.05%), Query Frame = 0
Query:   41 SDKRQEHDFALWKRTKDEALEPSWSSPWGRGRPGWHIECSVMASDTFQE-LSGGRMDIHSGGIDLRFPHHENEVAQAEACLGCHQWVNYWMHAGHLHIKGFKMSKSLKNFITIQEALQTHTARQIRFCFLLSRYNAPMDYGDGTMSNAAALESYFAEFFHNIKAFLRKAGVSQTQHMGVKEKELFHRLQEAKLEIRAAFADDFDIPLALSKLQELVRATNRYLEDPSPASLLVRAVAEYTTWVFKCLGLASGSEGELGFSSPLRGGIGEGGGXXGGREEVMAPVLDVVASFRDALRAAAIEKDAGKVLELCDSLRDSLLPPLGVRLEDKDGGSIWKLVDPSVLMKEKAQXXXXXXXXXXXXXXXXXXXXXXXXXAQIPPSVYF-QRTQGDK----FSGYDPEGFPTHDKEGNPLSKGVLKKLGKEWEGHKKAYAK 470
            +DK+   DFALWK+TK    EPSW SPWG GRPGWHIECSVMASD     L   RMD+HSGG+DL+FPHH+NE+AQAEA  G  QWVNY++HAGHLHIKG KMSKSLKNFITIQ+AL+ ++ARQIR  FLL +YNA MDYGD TM++A   E  F EFFHN+KA LR+  +  +Q        L   L  AK ++  A  DDFD P A+S L +LVRATN Y+E  +  +L+VR VA Y T +F+  GL  GSE ++GF++       E GG    REE + PVLD + +FR A+R  A  +D G VL+LCD+ RD  LP LG+RLEDK  GS+WKL DP+ L++E  Q  XXXXXXXXXXXXXXXXXXXXXXX ++PP  Y  Q T  D     +S +D +G PTHD  G P++K   KK+ K ++  +  Y K
Sbjct:  217 TDKQSPRDFALWKKTKPG--EPSWDSPWGPGRPGWHIECSVMASDVLDRLLQHRRMDLHSGGVDLKFPHHDNEMAQAEAECGETQWVNYFVHAGHLHIKGLKMSKSLKNFITIQQALEINSARQIRMLFLLHKYNAQMDYGDNTMTHAMETEKRFVEFFHNVKACLRQHRMDDSQKWDATTIRLQQTLAAAKTKVHDALRDDFDTPTAMSVLVDLVRATNIYVEGDTVVNLVVRNVASYVTDIFRTFGLV-GSE-DVGFAT-------ESGG--ASREETLGPVLDALMNFRAAVRDKARSQDVGGVLDLCDAFRDLHLPNLGIRLEDKADGSVWKLADPAELLREMEQKEXXXXXXXXXXXXXXXXXXXXXXXXRLPPVEYMRQLTLEDNVTLMYSQFDEDGIPTHDATGEPVNKNQGKKVQKLFKAQQGKYDK 638          
BLAST of NO30G00960 vs. NCBI_GenBank
Match: OQS07014.1 (cysteinyl-tRNA synthetase [Thraustotheca clavata])

HSP 1 Score: 387.9 bits (995), Expect = 4.600e-104
Identity = 234/446 (52.47%), Postives = 298/446 (66.82%), Query Frame = 0
Query:   30 SQGALAASAGPSDKRQEHDFALWKRTKDEALEPSWSSPWGRGRPGWHIECSVMASDTFQELSGGRMDIHSGGIDLRFPHHENEVAQAEACLGCHQWVNYWMHAGHLHIKGFKMSKSLKNFITIQEALQTHTARQIRFCFLLSRYNAPMDYGDGTMSNAAALESYFAEFFHNIKAFLRKAGVSQTQHMGVKEKELFHRLQEAKLEIRAAFADDFDIPLALSKLQELVRATNRYLEDPSP-ASLLVRAVAEYTTWVFKCLGLASGSEGELGFSSPLRGGIGEGGGXXGGREEVMAPVLDVVASFRDALRAAAIEKD---AGKVLELCDSLRDSLLPPLGVRLEDK-DGGSIWKLVDPSVLMKEKAQXXXXXXXXXXXXXXXXXXXXXXXXXAQIPPSVYFQ---RTQGDKFSGYDPEGFPTHDKEGNPLSKGVLKKLGKEWEGHKKAY 468
            ++G  A S G +DKR  +DFALWK++K    EP W SPWG GRPGWHIECS MASD  ++L GGR+DIH+GGIDLRFPHH+NE+AQ+EA     QW+NY++H GHL+I+G KMSKSLKNF+ I EAL  +T RQ+RF FLL +YN PMDY D TM  A  ++S+FA FF N+K  LR+ GV QTQ  G+ EK+L  R  E K ++  A ADD + PLA+  LQEL +  NRYL    P  S+ +RA AEY T + +  GL   +  ++GF  PL        G  G +E ++ PVLD+ A FRD +R AA+ KD   A  ++ELCDS+RD+ LP  GVRLED+ +  S+WKL +   L++E   XXXXXXXXXXXXXXXXXXXXXXXXX         +   + Q DK+S ++ EG PT    G  +SKG+LKKL KE E  KK Y
Sbjct:  236 AEGEGALSVGATDKRNANDFALWKKSKKG--EPYWKSPWGEGRPGWHIECSAMASDALKDLEGGRIDIHTGGIDLRFPHHDNEIAQSEAYFNFEQWINYFIHTGHLNIEGLKMSKSLKNFVKINEALALNTPRQLRFLFLLHKYNVPMDYNDNTMDEAVVVDSFFANFFQNVKVALREIGVEQTQKWGLNEKKLGERTLETKEKVHQALADDLNTPLAIQLLQELAKDVNRYLALNIPHVSMCLRAAAEYITHMLRVFGLIPDAT-DIGF--PL--------GASGDQETILTPVLDIFAEFRDQVRTAALSKDPNLARILMELCDSVRDTKLPHAGVRLEDRANSSSVWKLGNKEELLEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDMFKLQNDKYSAFNAEGLPTQTINGEAVSKGLLKKLAKEQEKQKKLY 668          
BLAST of NO30G00960 vs. NCBI_GenBank
Match: POM58819.1 (Cysteine-tRNA ligase [Phytophthora palmivora var. palmivora])

HSP 1 Score: 383.3 bits (983), Expect = 1.100e-102
Identity = 240/456 (52.63%), Postives = 299/456 (65.57%), Query Frame = 0
Query:   30 SQGALAASAGPSDKRQEHDFALWKRTKDEALEPSWSSPWGRGRPGWHIECSVMASDTFQELSGGRMDIHSGGIDLRFPHHENEVAQAEACLGCHQWVNYWMHAGHLHIKGFKMSKSLKNFITIQEALQTHTARQIRFCFLLSRYNAPMDYGDGTMSNAAALESYFAEFFHNIKAFLRKAGVSQTQHMGVKEKELFHRLQEAKLEIRAAFADDFDIPLALSKLQELVRATNRYL--EDPSPASLLVRAVAEYTTWVFKCLGLASGSEGELGFSSPLRGGIGEGGGXXGGREEVMAPVLDVVASFRDALRAAA---------IEKDAGKVLELCDSLRDSLLPPLGVRLEDKD-GGSIWKLVDPSVLM----KEKAQXXXXXXXXXXXXXXXXXXXXXXXXXAQIPPSVYFQRTQGDKFSGYDPEGFPTHDKEGNPLSKGVLKKLGKEWEGHKKAYAK 470
            ++G  A SAG SDKR   DFALWK++K    EP W SPWG GRPGWHIECS MASD  + L+GG++D+HSGGIDLRFPHH+NE+AQ+EA     QWVNY++H GHL+I+G KMSKSLKNF+ IQEAL  ++ RQ+RF FLL +YN PMDY D +M  A  ++ +FAEFF N+KA LR+ GV +TQ     EK L   L + K ++  A +DD + PLAL  LQ+L +  NRY+  +    AS+L+RA AEY T +    GL + S  ++GF  PL  G   G      +E ++ PVLD+ A FRD +R AA         ++  A  VL LCD +RD  LP  GVRLED+  G +IWKL +   L+    K+K  XXXXXXXXXXXXXXXXXXXXXXXXX  IPPS  F   + DK+S +D EG PTHD  G PLSKG  KKL KE    K  Y K
Sbjct:  239 AEGEGALSAGQSDKRNASDFALWKKSKSG--EPFWPSPWGEGRPGWHIECSAMASDALKHLAGGKIDVHSGGIDLRFPHHDNEIAQSEAYFDFSQWVNYFVHTGHLNIEGLKMSKSLKNFVKIQEALMDNSPRQLRFLFLLHKYNVPMDYNDNSMDEAVGVDRFFAEFFANVKARLRELGVEKTQKWTPVEKALHGALLDCKDKVFRALSDDINTPLALLHLQQLAKEVNRYMAGDIEKQASMLIRAAAEYITRILSIFGLVT-SATDIGF--PLSSGTTGG----ADQETILTPVLDIFAQFRDEIREAARSAAAEGSDVKALASTVLRLCDVVRDEKLPYAGVRLEDRSAGAAIWKLANKDELIEELEKKKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPPSEMFLGMK-DKYSKFDDEGLPTHDAAGEPLSKGQTKKLAKEQAKQKALYEK 684          
BLAST of NO30G00960 vs. NCBI_GenBank
Match: XP_002906718.1 (cysteinyl-tRNA synthetase, putative [Phytophthora infestans T30-4] >EEY66119.1 cysteinyl-tRNA synthetase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 378.6 bits (971), Expect = 2.800e-101
Identity = 237/456 (51.97%), Postives = 296/456 (64.91%), Query Frame = 0
Query:   30 SQGALAASAGPSDKRQEHDFALWKRTKDEALEPSWSSPWGRGRPGWHIECSVMASDTFQELSGGRMDIHSGGIDLRFPHHENEVAQAEACLGCHQWVNYWMHAGHLHIKGFKMSKSLKNFITIQEALQTHTARQIRFCFLLSRYNAPMDYGDGTMSNAAALESYFAEFFHNIKAFLRKAGVSQTQHMGVKEKELFHRLQEAKLEIRAAFADDFDIPLALSKLQELVRATNRYL--EDPSPASLLVRAVAEYTTWVFKCLGLASGSEGELGFSSPLRGGIGEGGGXXGGREEVMAPVLDVVASFRD----ALRAAAIEKD-----AGKVLELCDSLRDSLLPPLGVRLEDKD-GGSIWKLVDPSVLM----KEKAQXXXXXXXXXXXXXXXXXXXXXXXXXAQIPPSVYFQRTQGDKFSGYDPEGFPTHDKEGNPLSKGVLKKLGKEWEGHKKAYAK 470
            ++G  A SAG SDKR   DFALWK++K    EP W SPWG GRPGWHIECS MASD  + L+GG++D+HSGGIDLRFPHH+NE+AQ+EA     QWVNY++H GHL+I+G KMSKSLKNF+ IQEAL  ++ RQ+RF FLL +YN PMDY D +M  A  ++ +F EFF N+KA LR+ GV +TQ     EK L   L + K ++  A +DD + PLAL  LQ+L +  NRY+  +   P S+L+R+ AEY T +    GL + S  ++GF       +G G      +E V+ PVLD+ A FRD    A R+AA E       A  VL LCD +RD  LP  GVRLED+  G ++WKL +   L+    K+K  XXXXXXXXXXXXXXXXXXXXXXXXX  IPPS  F   + DK+S +D  G PTHD  G PLSKG  KKL KE    K  Y K
Sbjct:  239 AEGEGALSAGQSDKRNASDFALWKKSKSG--EPFWPSPWGEGRPGWHIECSAMASDALKHLAGGKIDVHSGGIDLRFPHHDNEIAQSEAYFDFSQWVNYFVHTGHLNIEGLKMSKSLKNFVKIQEALMDNSPRQLRFLFLLHKYNVPMDYNDNSMDEAVGVDRFFTEFFANVKARLRELGVEKTQKWTPVEKALHGALLDCKEKVFRALSDDINTPLALLHLQQLAKEVNRYMAGDIEKPTSMLIRSSAEYITRILSIFGLVT-SATDIGFP------LGSGATGGADQETVLTPVLDIFAQFRDEIREAARSAAAEGGDPKALANTVLRLCDVVRDEKLPYAGVRLEDRSAGAAVWKLANKDELIEELEKKKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPPSEMFLGMK-DKYSKFDDNGLPTHDAAGEPLSKGQTKKLAKEQAKQKALYEK 684          
BLAST of NO30G00960 vs. NCBI_GenBank
Match: XP_009515782.1 (hypothetical protein PHYSODRAFT_552257 [Phytophthora sojae] >EGZ28507.1 hypothetical protein PHYSODRAFT_552257 [Phytophthora sojae])

HSP 1 Score: 376.7 bits (966), Expect = 1.100e-100
Identity = 237/456 (51.97%), Postives = 295/456 (64.69%), Query Frame = 0
Query:   30 SQGALAASAGPSDKRQEHDFALWKRTKDEALEPSWSSPWGRGRPGWHIECSVMASDTFQELSGGRMDIHSGGIDLRFPHHENEVAQAEACLGCHQWVNYWMHAGHLHIKGFKMSKSLKNFITIQEALQTHTARQIRFCFLLSRYNAPMDYGDGTMSNAAALESYFAEFFHNIKAFLRKAGVSQTQHMGVKEKELFHRLQEAKLEIRAAFADDFDIPLALSKLQELVRATNRYL--EDPSPASLLVRAVAEYTTWVFKCLGLASGSEGELGFSSPLRGGIGEGGGXXGGREEVMAPVLDVVASFRDALRAAA---------IEKDAGKVLELCDSLRDSLLPPLGVRLEDKD-GGSIWKLVDPSVLM----KEKAQXXXXXXXXXXXXXXXXXXXXXXXXXAQIPPSVYFQRTQGDKFSGYDPEGFPTHDKEGNPLSKGVLKKLGKEWEGHKKAYAK 470
            ++G  A SAG SDKR   DFALWK++K    EP W SPWG GRPGWHIECS MASD  + L+GG++D+HSGGIDLRFPHH+NE+AQ+EA     QWVNY++H GHL+I+G KMSKSLKNF+ IQEAL  ++ RQ+RF FLL +YN PMDY D +M  A  ++ +F EFF N+KA LR+ GV +TQ     EK L   L E K ++  A +DD + PLAL  LQ+L +  NRY+  +    AS+L+RA AEY T +    GL + S  ++GF  PL  G   G      +E V+ PVLD+ A FRD +R AA          +  A  VL LCD +RD  LP  GVRLED+  G ++WKL +   L+    K++  XXXXXXXXXXXXXXXXXXXXXXXXX   PPS  F   + DK+S +D  G PTHD  G PLSKG  KKL KE    K  Y K
Sbjct:  241 AEGEGALSAGQSDKRNASDFALWKKSKSG--EPFWPSPWGEGRPGWHIECSAMASDALKHLAGGKIDVHSGGIDLRFPHHDNEIAQSEAYFDFSQWVNYFVHTGHLNIEGLKMSKSLKNFVKIQEALMDNSPRQLRFLFLLHKYNVPMDYNDNSMDEAVGVDRFFTEFFANVKARLRELGVEKTQKWTPVEKALHGALLECKEKVFRALSDDINTPLALLHLQQLAKEVNRYMAGDIEKQASMLIRAAAEYITRILSVFGLVT-SATDIGF--PLSSGATGG----ADQETVLTPVLDIFAQFRDEIREAARSAAADGGDAKALASAVLRLCDVVRDEKLPYAGVRLEDRSAGAAVWKLANKDELIEEIEKKEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPPSEMFLGMK-DKYSKFDDNGLPTHDAAGEPLSKGQTKKLAKEQAKQKALYEK 686          
The following BLAST results are available for this feature:
BLAST of NO30G00960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ32684.19.500e-11048.37Cysteinyl-tRNA Synthetase [Ectocarpus siliculosus][more]
OQR80790.13.100e-10853.98cysteinyl-tRNA synthetase [Achlya hypogyna][more]
XP_012208864.12.900e-10653.11cysteinyl-tRNA synthetase [Saprolegnia parasitica ... [more]
XP_008618159.11.100e-10553.23cysteinyl-tRNA synthetase [Saprolegnia diclina VS2... [more]
XP_008876440.11.100e-10549.68cysteine-tRNA ligase [Aphanomyces invadans] >ETV94... [more]
XP_002178673.17.000e-10554.71predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OQS07014.14.600e-10452.47cysteinyl-tRNA synthetase [Thraustotheca clavata][more]
POM58819.11.100e-10252.63Cysteine-tRNA ligase [Phytophthora palmivora var. ... [more]
XP_002906718.12.800e-10151.97cysteinyl-tRNA synthetase, putative [Phytophthora ... [more]
XP_009515782.11.100e-10051.97hypothetical protein PHYSODRAFT_552257 [Phytophtho... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR073ncniR073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR097ngnoR097Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00960.2NO30G00960.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO30G00960.1NO30G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674658gene_10207Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00960.2NO30G00960.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO30G00960.1NO30G00960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00960 ID=NO30G00960|Name=NO30G00960|organism=Nannochloropsis oceanica|type=gene|length=3905bp
ATGGGCAACAAACCCGCCACAAGCAAGACAAGCGATTCTCCTCCAGCCAC
CGGCTCCACCCCTCAGAAGATTATCACCATGTCTGCCTCCCAGGgttcca
ccgtcctcccctccccccccccatccaaacctgctcggagaccttctggc
tctccttcgtcgtcttcttctgctgtnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnccctccctccctcagGCGCTCTGG
CCGCCAGTGCCGGCCCGAGCGACAAGCGGCAAGAGCACGATTTCGCGCTG
TGGAAGAGGACGAAGGATGAGGCTTTAGAACCCTCGTGGAGCTCTCCTTG
GGGCCGCGGTCGTCCCGGGTGGCACATCGAATGTAGCGTCATGGCAAGgt
aaatcaagtcctccctccttccctccctcccccccttcgtatggctgtcc
ctccctccccctcctccctcctttcctcctcttgccctcccgccctctct
ccctccttccttccctcctcatcgttgtaccctccattccaaagccgtca
ttctgactgacactttttgctcccctcaatccttccctccctccctccct
ccctccctccctccctccttccagCGATACCTTTCAGGAACTGTCGGGAG
GACGGATGGACATTCACTCGGGAGGAATCGACTTGAGGTTCCCGCACCAC
GAGAATGAGGTGGCACAGgtagggagggagggagggagggacggagggag
ggaggggaagaggtctttcttcattttcttgttcccgcaccacgagaata
agatggcgcaagtagtgagggaggaagggagttcattaaatatatatata
tatatataacacatttatttatttattgacttttactcgattattccttg
tggcagGCGGAGGCGTGCTTAGGATGCCATCAGTGGGTGAATTACTGGAT
GCACGCCGgtaaggaccggagggagggagggagggagggagggagggagg
gagggagggagggagggagggagggagggagggaggactcttgccctcgt
cttggtggtcatgacaccctcttccaggcacgactgtctcccctgaccct
ccctccctccctccctccctcccttcttccctctatagGCCACCTGCACA
TCAAAGGCTTCAAAATGAGCAAAAGTCTCAAGAACTTCATCACCATCCAG
GAAGCTTTGCAGACCCACACGGCCCGGCAGATCCGTTTCTGCTTCCTCCT
CTCCCGTTACAACGCTCCCATGgcacgttctccctccctccctccctccc
tccctccctcccctctttagctgctcactcattccttcaccctccctccc
tccctccctcccaccctccctctcttcttccacgtccacactgcctatcg
tcatccacatggccgcttcctctcaccctctcacattccctccctccctc
cctccctcccttcctcagGACTACGGAGATGGTACCATGTCCAACGCCGC
GGCCCTTGAATCTTATTTCGCGGAATTTTTCCACAACATCAAGGCTTTCC
TCCGCAAgtacgtcctccctccctccctccctccctccctccctcccaac
ctcccgtcttttgctgctcactcatttcttcacccttcctccctccctcc
ctccctcagAGCCGGTGTTTCTCAGACGCAGCACATGGGCGTGAAGGAGA
AGGAGCTCTTTCACCGTCTCCAGGAGgtgaggggagaaagggagggaggg
agggagggagagagggagagagagagggacgacccaaccacgcaactgca
aagcttgataatttcgcgtctgtcggtactcgcattgataccctccctcc
ctccctccctccctccctccctccctccctccctccctccctccctccct
ccctccctcccttagGCCAAGCTTGAGATCCGCGCGGCCTTTGCCGACGA
TTTCGATATTCCACTGGCGCTGAGCAAGCTCCAGgtagggagggagggag
ggagggggggagggagggaggaaaggagggagggaaggagggaggtaggg
agggaaggagagaggaagggagggcgggagggaaggagggaaggacagat
gactgacggtgccctggtactaacgaacgggaggagcggaaaaggaggga
gggagggagggagggagagagggagggaggaaaggaaaactgaagggatg
gatacaaagattcgtatttcatttttattgctccgtttctcctaccctcc
ctccctccctccctccctccctccctccctccctcagGAACTAGTCCGGG
CTACCAATCGCTACTTAGAAGACCCTTCGCCCGCCTCCCTGCTCGTGCGg
tacgtcctccctccctgcctccctccctccctctctccctcggcagccaa
cctttccatccctcgtttcctccctccttttttcccttcttccctcttcc
tccatccttccttccctccccatcatatgtccacctcctcacgcctgtat
ctcttgccttccatccacttttcccaaacataaaactgacccgcccgctt
ttcctccctccctccctccctcccgccctctttccctcccgccctccctc
ccttcctcagCGCTGTCGCGGAGTACACCACCTGGGTCTTTAAGTGCTTG
GGATTGGCTTCTGGTAGTGAGGGAGAACTCGGTTTCTCGTCCCCCCTGAG
AGGAGGGATAGGGGAAGGAGGAGGAGGGGAGGGAGGGAGGGAGGAAGTGA
TGGCGCCGGTGTTGGATGTGGTGGCTTCCTTTAGGGATGCCCTGAGGGCA
GCGGCGATCGAGAAGGATGCCGGgtgagggggagggagggaggaaggaag
gggaggggggagggaagcgtcacatttggacagacgcatttgctcatact
ttccatccatccatttctccctccctccctccctccctccactcgcagTA
AGGTGCTCGAGCTGTGTGATAGCCTCCGTGACTCTCTGCTCCCTCCCTTG
GGCGTCCGGCTAGAGGACAAGGATGGGgtagggagggagggagggaggga
gggagggagggtacccaacaaaaaggcattcaacgacacctctatgcact
tcctctcctcgacacctccatgcacttcctctcctcgacacctccatgca
cttaccctcactcactctcttcctcccctccctcccttctctttaatccc
tccctatctccctccgccagGGCTCGATTTGGAAGCTCGTGGACCCGTCG
GTGCTGATGAAGGAGAAGGCCCAAAAGGAGACGGAGGAGAAGAGGAAACA
AGAGCTCAAGGCTGAAGCTGCCAAAAAGGCAGCGGAGAAGGAGGCGAGgt
aacgaagcagggattgcagtaggaagggagggagggagggagggagggcc
gggatggcgctagacagtcgaaacgaaataaaagaaagctcactcattag
taagaatcgttcaccactggccttcactccctccctccctccctccctcc
ctctctccttcctccctcctcaccacagGGCTCAAATCCCACCTTCCGTC
TACTTTCAACGGACGCAGGGAGACAAATTTTCCGGGTATGATCCCGAAGG
CTTCCCGACCCACGACAAGGAGGGCAATCCTCTCTCCAAGGGCGTGTTGA
AGAAATTAGGGAAGGAATGGGAGGGGCACAAGAAAGCATATGCGAAAGCT
GTGGGGAAGGGGTAGTGGGCGAGGTTATATATATATATATATATATATAT
GCTTTTTGCCGAGACTCATGAGGGAATGGGAAATGAGGGAGGGAGGGATA
GAAGGAGGGAGGGAGAACCTTTGAGATAACGGGGAGGGAGGGAGGGAGGG
AGGGA
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protein sequence of NO30G00960.2

>NO30G00960.2-protein ID=NO30G00960.2-protein|Name=NO30G00960.2|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MGNKPATSKTSDSPPATGSTPQKIITMSASQGALAASAGPSDKRQEHDFA
LWKRTKDEALEPSWSSPWGRGRPGWHIECSVMASDTFQELSGGRMDIHSG
GIDLRFPHHENEVAQAEACLGCHQWVNYWMHAGHLHIKGFKMSKSLKNFI
TIQEALQTHTARQIRFCFLLSRYNAPMDYGDGTMSNAAALESYFAEFFHN
IKAFLRKAGVSQTQHMGVKEKELFHRLQEAKLEIRAAFADDFDIPLALSK
LQELVRATNRYLEDPSPASLLVRAVAEYTTWVFKCLGLASGSEGELGFSS
PLRGGIGEGGGGEGGREEVMAPVLDVVASFRDALRAAAIEKDAGKVLELC
DSLRDSLLPPLGVRLEDKDGVGREGGREGGRVPNKKAFNDTSMHFLSSTP
PCTSSPRHLHALTLTHSLPPLPPFSLIPPYLPPPGLDLEARGPVGADEGE
GPKGDGGEEETRAQG*
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protein sequence of NO30G00960.1

>NO30G00960.1-protein ID=NO30G00960.1-protein|Name=NO30G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MGNKPATSKTSDSPPATGSTPQKIITMSASQGALAASAGPSDKRQEHDFA
LWKRTKDEALEPSWSSPWGRGRPGWHIECSVMASDTFQELSGGRMDIHSG
GIDLRFPHHENEVAQAEACLGCHQWVNYWMHAGHLHIKGFKMSKSLKNFI
TIQEALQTHTARQIRFCFLLSRYNAPMDYGDGTMSNAAALESYFAEFFHN
IKAFLRKAGVSQTQHMGVKEKELFHRLQEAKLEIRAAFADDFDIPLALSK
LQELVRATNRYLEDPSPASLLVRAVAEYTTWVFKCLGLASGSEGELGFSS
PLRGGIGEGGGGEGGREEVMAPVLDVVASFRDALRAAAIEKDAGKVLELC
DSLRDSLLPPLGVRLEDKDGGSIWKLVDPSVLMKEKAQKETEEKRKQELK
AEAAKKAAEKEARAQIPPSVYFQRTQGDKFSGYDPEGFPTHDKEGNPLSK
GVLKKLGKEWEGHKKAYAKAVGKG*
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Synonyms
Publications