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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr30 | genome | chr30:356018..359922 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G00960.1 vs.
Match: CBJ32684.1 (Cysteinyl-tRNA Synthetase [Ectocarpus siliculosus]) HSP 1 Score: 437.6 bits (1124), Expect = 5.000e-119 Identity = 239/459 (52.07%), Postives = 298/459 (64.92%), Query Frame = 0
Query: 27 MSASQGALAASAGPSDKRQEHDFALWKRTKDEALEPSWSSPWGRGRPGWHIECSVMASDTFQELSGGRMDIHSGGIDLRFPHHENEVAQAEACLGCHQWVNYWMHAGHLHIKGFKMSKSLKNFITIQEALQTHTARQIRFCFLLSRYNAPMDYGDGTMSNAAALESYFAEFFHNIKAFLRKAGVSQTQHMGVKEKELFHRLQEAKLEIRAAFADDFDIPLALSKLQELVRATNRYLEDPSPA-----SLLVRAVAEYTTWVFKCLGLASGSEGELGFSSPLRGGIG---EGGGGEGGREEVMAPVLDVVASFRDALRAAAIEKDAGKVLELCDSLRDSLLPPLGVRLEDKDGGSIWKLVDPSVLMKEKAQKETEEKRKQELKAEAAKKAAEKEARAQIPPSVYFQRTQGDK----FSGYDPEGFPTHDKEGNPLSKGVLKKLGKEWEGHKKAYAKAVGK 474
M+ +GAL+ AG DKR DFALWKR+++ EPSW SPWG GRPGWHIECSVMAS TF+ + G MDIHSGG+DL+FPHH+NE+AQAEA C QWVNY++H GHLHIKGFKMSKSLKNFITI++ALQ ++ RQIR FLL +YN PMDYGD MS A A E F+EFFHN+KA LR+ E L L +AK E++ DD D P A+ LQELV+ N+Y+E A + VR AEY T +FK GLAS LGFS G+G G GGE RE ++ PVLDV++ FRD +R D VL CD +R+ LLP +GVRLEDK ++WKL DP+VL +E+ Q+E E+ R+ E KAE +KAAEKEAR +IP S YF+ +G+ ++ +D G PTHD G P+ K KK+ KEWE K Y A+ K
Sbjct: 209 MAEGEGALSLGAG--DKRSSGDFALWKRSREG--EPSWPSPWGDGRPGWHIECSVMASATFEGMGDGTMDIHSGGVDLKFPHHDNEMAQAEAKYDCCQWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALQENSPRQIRLLFLLHKYNTPMDYGDDAMSGALAAERTFSEFFHNVKAALRRTTARDPARTKEPELALMSSLSDAKKEVKKCLCDDVDTPGAMGALQELVKNVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKVFGLASPGPA-LGFSQVGDAGVGGDASGEGGEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDQAVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGEDGKALYTQFDDNGVPTHDAAGEPIVKD--KKVKKEWEAQNKLYNNALAK 660
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO30G00960.1 ID=NO30G00960.1|Name=NO30G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1565bp
ATGGGCAACAAACCCGCCACAAGCAAGACAAGCGATTCTCCTCCAGCCAC
CGGCTCCACCCCTCAGAAGATTATCACCATGTCTGCCTCCCAGGGCGCTC
TGGCCGCCAGTGCCGGCCCGAGCGACAAGCGGCAAGAGCACGATTTCGCG
CTGTGGAAGAGGACGAAGGATGAGGCTTTAGAACCCTCGTGGAGCTCTCC
TTGGGGCCGCGGTCGTCCCGGGTGGCACATCGAATGTAGCGTCATGGCAA
GCGATACCTTTCAGGAACTGTCGGGAGGACGGATGGACATTCACTCGGGA
GGAATCGACTTGAGGTTCCCGCACCACGAGAATGAGGTGGCACAGGCGGA
GGCGTGCTTAGGATGCCATCAGTGGGTGAATTACTGGATGCACGCCGGCC
ACCTGCACATCAAAGGCTTCAAAATGAGCAAAAGTCTCAAGAACTTCATC
ACCATCCAGGAAGCTTTGCAGACCCACACGGCCCGGCAGATCCGTTTCTG
CTTCCTCCTCTCCCGTTACAACGCTCCCATGGACTACGGAGATGGTACCA
TGTCCAACGCCGCGGCCCTTGAATCTTATTTCGCGGAATTTTTCCACAAC
ATCAAGGCTTTCCTCCGCAAAGCCGGTGTTTCTCAGACGCAGCACATGGG
CGTGAAGGAGAAGGAGCTCTTTCACCGTCTCCAGGAGGCCAAGCTTGAGA
TCCGCGCGGCCTTTGCCGACGATTTCGATATTCCACTGGCGCTGAGCAAG
CTCCAGGAACTAGTCCGGGCTACCAATCGCTACTTAGAAGACCCTTCGCC
CGCCTCCCTGCTCGTGCGCGCTGTCGCGGAGTACACCACCTGGGTCTTTA
AGTGCTTGGGATTGGCTTCTGGTAGTGAGGGAGAACTCGGTTTCTCGTCC
CCCCTGAGAGGAGGGATAGGGGAAGGAGGAGGAGGGGAGGGAGGGAGGGA
GGAAGTGATGGCGCCGGTGTTGGATGTGGTGGCTTCCTTTAGGGATGCCC
TGAGGGCAGCGGCGATCGAGAAGGATGCCGGTAAGGTGCTCGAGCTGTGT
GATAGCCTCCGTGACTCTCTGCTCCCTCCCTTGGGCGTCCGGCTAGAGGA
CAAGGATGGGGGCTCGATTTGGAAGCTCGTGGACCCGTCGGTGCTGATGA
AGGAGAAGGCCCAAAAGGAGACGGAGGAGAAGAGGAAACAAGAGCTCAAG
GCTGAAGCTGCCAAAAAGGCAGCGGAGAAGGAGGCGAGGGCTCAAATCCC
ACCTTCCGTCTACTTTCAACGGACGCAGGGAGACAAATTTTCCGGGTATG
ATCCCGAAGGCTTCCCGACCCACGACAAGGAGGGCAATCCTCTCTCCAAG
GGCGTGTTGAAGAAATTAGGGAAGGAATGGGAGGGGCACAAGAAAGCATA
TGCGAAAGCTGTGGGGAAGGGGTAGTGGGCGAGGTTATATATATATATAT
ATATATATATGCTTTTTGCCGAGACTCATGAGGGAATGGGAAATGAGGGA
GGGAGGGATAGAAGGAGGGAGGGAGAACCTTTGAGATAACGGGGAGGGAG
GGAGGGAGGGAGGGA back to topprotein sequence of NO30G00960.1 >NO30G00960.1-protein ID=NO30G00960.1-protein|Name=NO30G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MGNKPATSKTSDSPPATGSTPQKIITMSASQGALAASAGPSDKRQEHDFA
LWKRTKDEALEPSWSSPWGRGRPGWHIECSVMASDTFQELSGGRMDIHSG
GIDLRFPHHENEVAQAEACLGCHQWVNYWMHAGHLHIKGFKMSKSLKNFI
TIQEALQTHTARQIRFCFLLSRYNAPMDYGDGTMSNAAALESYFAEFFHN
IKAFLRKAGVSQTQHMGVKEKELFHRLQEAKLEIRAAFADDFDIPLALSK
LQELVRATNRYLEDPSPASLLVRAVAEYTTWVFKCLGLASGSEGELGFSS
PLRGGIGEGGGGEGGREEVMAPVLDVVASFRDALRAAAIEKDAGKVLELC
DSLRDSLLPPLGVRLEDKDGGSIWKLVDPSVLMKEKAQKETEEKRKQELK
AEAAKKAAEKEARAQIPPSVYFQRTQGDKFSGYDPEGFPTHDKEGNPLSK
GVLKKLGKEWEGHKKAYAKAVGKG* back to topmRNA from alignment at chr30:356018..359922- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO30G00960.1 ID=NO30G00960.1|Name=NO30G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=3905bp|location=Sequence derived from alignment at chr30:356018..359922- (Nannochloropsis oceanica)
ATGGGCAACAAACCCGCCACAAGCAAGACAAGCGATTCTCCTCCAGCCAC
CGGCTCCACCCCTCAGAAGATTATCACCATGTCTGCCTCCCAGGGTTCCA
CCGTCCTCCCCTCCCCCCCCCCATCCAAACCTGCTCGGAGACCTTCTGGC
TCTCCTTCGTCGTCTTCTTCTGCTGTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCTCCCTCCCTCAGGCGCTCTGG
CCGCCAGTGCCGGCCCGAGCGACAAGCGGCAAGAGCACGATTTCGCGCTG
TGGAAGAGGACGAAGGATGAGGCTTTAGAACCCTCGTGGAGCTCTCCTTG
GGGCCGCGGTCGTCCCGGGTGGCACATCGAATGTAGCGTCATGGCAAGGT
AAATCAAGTCCTCCCTCCTTCCCTCCCTCCCCCCCTTCGTATGGCTGTCC
CTCCCTCCCCCTCCTCCCTCCTTTCCTCCTCTTGCCCTCCCGCCCTCTCT
CCCTCCTTCCTTCCCTCCTCATCGTTGTACCCTCCATTCCAAAGCCGTCA
TTCTGACTGACACTTTTTGCTCCCCTCAATCCTTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCTTCCAGCGATACCTTTCAGGAACTGTCGGGAG
GACGGATGGACATTCACTCGGGAGGAATCGACTTGAGGTTCCCGCACCAC
GAGAATGAGGTGGCACAGGTAGGGAGGGAGGGAGGGAGGGACGGAGGGAG
GGAGGGGAAGAGGTCTTTCTTCATTTTCTTGTTCCCGCACCACGAGAATA
AGATGGCGCAAGTAGTGAGGGAGGAAGGGAGTTCATTAAATATATATATA
TATATATAACACATTTATTTATTTATTGACTTTTACTCGATTATTCCTTG
TGGCAGGCGGAGGCGTGCTTAGGATGCCATCAGTGGGTGAATTACTGGAT
GCACGCCGGTAAGGACCGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGACTCTTGCCCTCGT
CTTGGTGGTCATGACACCCTCTTCCAGGCACGACTGTCTCCCCTGACCCT
CCCTCCCTCCCTCCCTCCCTCCCTTCTTCCCTCTATAGGCCACCTGCACA
TCAAAGGCTTCAAAATGAGCAAAAGTCTCAAGAACTTCATCACCATCCAG
GAAGCTTTGCAGACCCACACGGCCCGGCAGATCCGTTTCTGCTTCCTCCT
CTCCCGTTACAACGCTCCCATGGCACGTTCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCCTCTTTAGCTGCTCACTCATTCCTTCACCCTCCCTCCC
TCCCTCCCTCCCACCCTCCCTCTCTTCTTCCACGTCCACACTGCCTATCG
TCATCCACATGGCCGCTTCCTCTCACCCTCTCACATTCCCTCCCTCCCTC
CCTCCCTCCCTTCCTCAGGACTACGGAGATGGTACCATGTCCAACGCCGC
GGCCCTTGAATCTTATTTCGCGGAATTTTTCCACAACATCAAGGCTTTCC
TCCGCAAGTACGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAAC
CTCCCGTCTTTTGCTGCTCACTCATTTCTTCACCCTTCCTCCCTCCCTCC
CTCCCTCAGAGCCGGTGTTTCTCAGACGCAGCACATGGGCGTGAAGGAGA
AGGAGCTCTTTCACCGTCTCCAGGAGGTGAGGGGAGAAAGGGAGGGAGGG
AGGGAGGGAGAGAGGGAGAGAGAGAGGGACGACCCAACCACGCAACTGCA
AAGCTTGATAATTTCGCGTCTGTCGGTACTCGCATTGATACCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTTAGGCCAAGCTTGAGATCCGCGCGGCCTTTGCCGACGA
TTTCGATATTCCACTGGCGCTGAGCAAGCTCCAGGTAGGGAGGGAGGGAG
GGAGGGGGGGAGGGAGGGAGGAAAGGAGGGAGGGAAGGAGGGAGGTAGGG
AGGGAAGGAGAGAGGAAGGGAGGGCGGGAGGGAAGGAGGGAAGGACAGAT
GACTGACGGTGCCCTGGTACTAACGAACGGGAGGAGCGGAAAAGGAGGGA
GGGAGGGAGGGAGGGAGAGAGGGAGGGAGGAAAGGAAAACTGAAGGGATG
GATACAAAGATTCGTATTTCATTTTTATTGCTCCGTTTCTCCTACCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGAACTAGTCCGGG
CTACCAATCGCTACTTAGAAGACCCTTCGCCCGCCTCCCTGCTCGTGCGG
TACGTCCTCCCTCCCTGCCTCCCTCCCTCCCTCTCTCCCTCGGCAGCCAA
CCTTTCCATCCCTCGTTTCCTCCCTCCTTTTTTCCCTTCTTCCCTCTTCC
TCCATCCTTCCTTCCCTCCCCATCATATGTCCACCTCCTCACGCCTGTAT
CTCTTGCCTTCCATCCACTTTTCCCAAACATAAAACTGACCCGCCCGCTT
TTCCTCCCTCCCTCCCTCCCTCCCGCCCTCTTTCCCTCCCGCCCTCCCTC
CCTTCCTCAGCGCTGTCGCGGAGTACACCACCTGGGTCTTTAAGTGCTTG
GGATTGGCTTCTGGTAGTGAGGGAGAACTCGGTTTCTCGTCCCCCCTGAG
AGGAGGGATAGGGGAAGGAGGAGGAGGGGAGGGAGGGAGGGAGGAAGTGA
TGGCGCCGGTGTTGGATGTGGTGGCTTCCTTTAGGGATGCCCTGAGGGCA
GCGGCGATCGAGAAGGATGCCGGGTGAGGGGGAGGGAGGGAGGAAGGAAG
GGGAGGGGGGAGGGAAGCGTCACATTTGGACAGACGCATTTGCTCATACT
TTCCATCCATCCATTTCTCCCTCCCTCCCTCCCTCCCTCCACTCGCAGTA
AGGTGCTCGAGCTGTGTGATAGCCTCCGTGACTCTCTGCTCCCTCCCTTG
GGCGTCCGGCTAGAGGACAAGGATGGGGTAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGTACCCAACAAAAAGGCATTCAACGACACCTCTATGCACT
TCCTCTCCTCGACACCTCCATGCACTTCCTCTCCTCGACACCTCCATGCA
CTTACCCTCACTCACTCTCTTCCTCCCCTCCCTCCCTTCTCTTTAATCCC
TCCCTATCTCCCTCCGCCAGGGCTCGATTTGGAAGCTCGTGGACCCGTCG
GTGCTGATGAAGGAGAAGGCCCAAAAGGAGACGGAGGAGAAGAGGAAACA
AGAGCTCAAGGCTGAAGCTGCCAAAAAGGCAGCGGAGAAGGAGGCGAGGT
AACGAAGCAGGGATTGCAGTAGGAAGGGAGGGAGGGAGGGAGGGAGGGCC
GGGATGGCGCTAGACAGTCGAAACGAAATAAAAGAAAGCTCACTCATTAG
TAAGAATCGTTCACCACTGGCCTTCACTCCCTCCCTCCCTCCCTCCCTCC
CTCTCTCCTTCCTCCCTCCTCACCACAGGGCTCAAATCCCACCTTCCGTC
TACTTTCAACGGACGCAGGGAGACAAATTTTCCGGGTATGATCCCGAAGG
CTTCCCGACCCACGACAAGGAGGGCAATCCTCTCTCCAAGGGCGTGTTGA
AGAAATTAGGGAAGGAATGGGAGGGGCACAAGAAAGCATATGCGAAAGCT
GTGGGGAAGGGGTAGTGGGCGAGGTTATATATATATATATATATATATAT
GCTTTTTGCCGAGACTCATGAGGGAATGGGAAATGAGGGAGGGAGGGATA
GAAGGAGGGAGGGAGAACCTTTGAGATAACGGGGAGGGAGGGAGGGAGGG
AGGGA back to topCoding sequence (CDS) from alignment at chr30:356018..359922- >NO30G00960.1 ID=NO30G00960.1|Name=NO30G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=1425bp|location=Sequence derived from alignment at chr30:356018..359922- (Nannochloropsis oceanica)
ATGGGCAACAAACCCGCCACAAGCAAGACAAGCGATTCTCCTCCAGCCAC
CGGCTCCACCCCTCAGAAGATTATCACCATGTCTGCCTCCCAGGGCGCTC
TGGCCGCCAGTGCCGGCCCGAGCGACAAGCGGCAAGAGCACGATTTCGCG
CTGTGGAAGAGGACGAAGGATGAGGCTTTAGAACCCTCGTGGAGCTCTCC
TTGGGGCCGCGGTCGTCCCGGGTGGCACATCGAATGTAGCGTCATGGCAA
GCGATACCTTTCAGGAACTGTCGGGAGGACGGATGGACATTCACTCGGGA
GGAATCGACTTGAGGTTCCCGCACCACGAGAATGAGGTGGCACAGGCGGA
GGCGTGCTTAGGATGCCATCAGTGGGTGAATTACTGGATGCACGCCGGCC
ACCTGCACATCAAAGGCTTCAAAATGAGCAAAAGTCTCAAGAACTTCATC
ACCATCCAGGAAGCTTTGCAGACCCACACGGCCCGGCAGATCCGTTTCTG
CTTCCTCCTCTCCCGTTACAACGCTCCCATGGACTACGGAGATGGTACCA
TGTCCAACGCCGCGGCCCTTGAATCTTATTTCGCGGAATTTTTCCACAAC
ATCAAGGCTTTCCTCCGCAAAGCCGGTGTTTCTCAGACGCAGCACATGGG
CGTGAAGGAGAAGGAGCTCTTTCACCGTCTCCAGGAGGCCAAGCTTGAGA
TCCGCGCGGCCTTTGCCGACGATTTCGATATTCCACTGGCGCTGAGCAAG
CTCCAGGAACTAGTCCGGGCTACCAATCGCTACTTAGAAGACCCTTCGCC
CGCCTCCCTGCTCGTGCGCGCTGTCGCGGAGTACACCACCTGGGTCTTTA
AGTGCTTGGGATTGGCTTCTGGTAGTGAGGGAGAACTCGGTTTCTCGTCC
CCCCTGAGAGGAGGGATAGGGGAAGGAGGAGGAGGGGAGGGAGGGAGGGA
GGAAGTGATGGCGCCGGTGTTGGATGTGGTGGCTTCCTTTAGGGATGCCC
TGAGGGCAGCGGCGATCGAGAAGGATGCCGGTAAGGTGCTCGAGCTGTGT
GATAGCCTCCGTGACTCTCTGCTCCCTCCCTTGGGCGTCCGGCTAGAGGA
CAAGGATGGGGGCTCGATTTGGAAGCTCGTGGACCCGTCGGTGCTGATGA
AGGAGAAGGCCCAAAAGGAGACGGAGGAGAAGAGGAAACAAGAGCTCAAG
GCTGAAGCTGCCAAAAAGGCAGCGGAGAAGGAGGCGAGGGCTCAAATCCC
ACCTTCCGTCTACTTTCAACGGACGCAGGGAGACAAATTTTCCGGGTATG
ATCCCGAAGGCTTCCCGACCCACGACAAGGAGGGCAATCCTCTCTCCAAG
GGCGTGTTGAAGAAATTAGGGAAGGAATGGGAGGGGCACAAGAAAGCATA
TGCGAAAGCTGTGGGGAAGGGGTAG back to top
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