NO30G00840, NO30G00840 (gene) Nannochloropsis oceanica

Overview
NameNO30G00840
Unique NameNO30G00840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2189
Alignment locationchr30:304904..307092 +

Link to JBrowse

Properties
Property NameValue
DescriptionAcyl carrier protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:304904..307092 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036736ACP-like_sf
IPR009081Acyl_carrier_prot-like
Homology
[Close]
BLAST of NO30G00840 vs. NCBI_GenBank
Match: EWM20716.1 (acyl carrier protein [Nannochloropsis gaditana])

HSP 1 Score: 219.5 bits (558), Expect = 5.500e-54
Identity = 115/120 (95.83%), Postives = 116/120 (96.67%), Query Frame = 0 
Query:    1 MRVLAFFALLAAPALAFVPRMPAPVRARASLTLRFSGEYSEKVRAIVLENMGDDAKVQDYLKANGDDKAEFAAMGFDSLDLVEFSMAIQKEFDLPDLNEEDFANLKTIKDVVTMVEANKK 121
            MRVLAF ALLAAPA AFVPRMPAPVRARA LTLRFSGEYSEKVRAIVLENMGDDAKVQDYLKANGDD AEFAAMGFDSLDLVEFSMA+QKEFDLPDLNEEDFANLKTIKDVVTMVEANKK
Sbjct:    1 MRVLAFLALLAAPAFAFVPRMPAPVRARAGLTLRFSGEYSEKVRAIVLENMGDDAKVQDYLKANGDDTAEFAAMGFDSLDLVEFSMAVQKEFDLPDLNEEDFANLKTIKDVVTMVEANKK 120
[Close]
BLAST of NO30G00840 vs. NCBI_GenBank
Match: WP_106874702.1 (hypothetical protein [Candidatus Phycorickettsia trachydisci] >AVP87860.1 hypothetical protein phytr_9320 [Candidatus Phycorickettsia trachydisci])

HSP 1 Score: 79.3 bits (194), Expect = 8.900e-12
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 0 
Query:   38 EYSEKVRAIVLENMGDDAKVQDYLKANGDDKAEFAAMGFDSLDLVEFSMAIQKEFDLPDLNEEDFANLKTIKDVVTMVEANKK 121
            + SEKVRAI+ +N   + +  +YL  N D++A+FA MG DSLD+ EFSMA++  F LP++ E+D   + TI+DVV  +   K+
Sbjct:   14 QVSEKVRAIISKNFSQNKQQAEYLAKNNDEQAKFAEMGLDSLDIAEFSMALEDTFGLPEIEEKDLKEMATIQDVVKYIITKKQ 96
The following BLAST results are available for this feature:
BLAST of NO30G00840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM20716.15.500e-5495.83acyl carrier protein [Nannochloropsis gaditana][more]
WP_106874702.18.900e-1244.58hypothetical protein [Candidatus Phycorickettsia t... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR097ngnoR097Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00840.1NO30G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605733gene_9228Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100385g2gene9687Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00840.1NO30G00840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00840 ID=NO30G00840|Name=NO30G00840|organism=Nannochloropsis oceanica|type=gene|length=2189bp
CTACAGTCACACCTTCCTCCTCTTCACTTAACCATGCGTGTCCTTGCTTT
CTTCGCCCTCCTGGCCGCACCCGCCCTGGCCTTCGTGCCCCGTATGCCCG
CCCCCGTGCGTGCCCGCGCCAGTCTCACCCTCCGATTCTCTGGAGAGTAC
AGCGAGAAGgtaagccacctctctttccttcatgtcctatcttgcgccct
ccttccccatgcttcttccccgatattttgtggtcagttcttggtgtgtc
accttggggtgggcgggtgaaccgcagcgatttctctttcagggatgtgg
gggctggatgcccgtcttggctacctttcccttccctccctggtcccgtc
ccttctcctcccttttcacttctctctcttttttttcttcctctccccct
cctcgaacttcccctggccgaaagtgatccatgtcccactttcacttacc
cgccctccctccctccctccccctctccctccagGTGCGCGCCATCGTGT
TGGAGAACATGGGCGATGATGCCAAGGTGCAGGACTACCTGAAGGCCAAC
GGTGATGATAAGGCCGAGTTCGCCGCCATGGGCTTTGATTCTTTGGACTT
GGTGGAGTTCTCCATGGCCATCCAGAAGgtacgggaacctgccttccttc
tctccctccctcccaacctacttcccttccatcacggcgccgagctctct
gtctccgatctcatgggtatatcgttgtgtctgcctcgtcgagcccgtag
tttagacatcgatatcattctcatgcactccatcaaatgaaaattaatat
taattttccactcacatactctcccctcccttccttcctctcttctcagG
AGTTCGACCTCCCGGACCTGAACGAGGAGGACTTCGCCAACCTCAAGACG
ATCAAGGACGTGGTCACTATGGTGGAGGCCAACAAGAAGTAAACACACAA
CGGCAGCGACAGCAGCAGCACCAGCAGCATGCACGAGGGGAGGAGGAAGA
TGACTCGGTTGTTGGTTGGTGTGTTGACGTATTGTGATATGTGTGCATTC
TCACCCTAATTGGTCTTCACATCTCCTCTCGTCTCCCTTTCCTGGGAAGG
GATGGCGGGAAGGAAAGAGGGAGGGAGTGCTTGTGTGTGCTATGTTGTGT
TTCGTGTGGCATGACTGGAGGTGGGCGATTAACAGCAAGAGGAGAAATTG
GGCTGAATGAACGCTTAAGTCGTGTCTGTGTTTGTGACGATGAGTGGGGA
GGACGTAGCCTCATCCCCCTTTTCTTCCCGGTCGGTCTTTTTCGGCCTTT
TCCTCCTTCCCCTCCAAGGGTGGAAGGAGGAGGATGGACAGGGCGAGAGA
CAAGAGAAGGATGGGGCTAGAGAATCCACACACAACTAGAGATAGAAGTA
CTTTATCCTTGTTCTCCTTCTTGTTATTGACGTGTTGATTTTTGGTCCTC
TTCTTGCGCGCGATCTTTCTCTCGTTCGTCGATCTTTCGTCTTTTTTTCT
TTTGTCAACTCTCTCTCTCTTCACCGACGCCTCTTCGAAGAATCTATTTC
CTCTCTACTTCTGCCCTCTCGTGTCTTAAATTTAATCCTCGCGGTTTTCG
TCTTCTCTCCCTCCACCACCAATCCCTTCTCCTTTCTCGTCCCCTTCCAC
ATCCCCCCCACCCCCTCCTCCTAAACCTGTTTCACTGTGGCCCTCCGCGA
TGAAGATGCCCGATTGGTGCGTGCCCTGTCATATGTACGCATATATCTAT
AATTGTTTATACATATTTAAATTCTTTCCTTCCCTTCTCAAGCCCCTGTG
GCTTTGTCTCTATTCGTCTCCTTCTGCCCGCCTCCGCGTTCCTTCCCCCC
CCCTCCCTCACGGCCTCCCTCCTCACCTCGGGTGCCTGCGTCTCCTGCCC
TCGATCGAACCGCGCAGTGAATTCAGTTGTCACACGAGGATGTTCGCCTG
GGGCCGTGGGGTTGTTGCTGCTATGCTGCTCTTGTCGTCGAGGAGGAGAG
GTGACATGTCCTACGCACGCGCGGTGGAGATAGACAGGAAGGAAGGAAGG
GTATTGATTCAAATAGGCAGGGCACAGAAGCATGAATACATATACCTTTG
GCCTTGGGCGCTAGCCGGGAGGTCTCTTCATCGGAAGGGGTCGTGTGGTT
CGTCATCTCACTGGGTCGTGTGGATAGGCGATGGCCTGT
back to top

protein sequence of NO30G00840.1

>NO30G00840.1-protein ID=NO30G00840.1-protein|Name=NO30G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MRVLAFFALLAAPALAFVPRMPAPVRARASLTLRFSGEYSEKVRAIVLEN
MGDDAKVQDYLKANGDDKAEFAAMGFDSLDLVEFSMAIQKEFDLPDLNEE
DFANLKTIKDVVTMVEANKK*
back to top
Synonyms
Publications