NO30G00840.1, NO30G00840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00840.1
Unique NameNO30G00840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1643
Alignment locationchr30:304904..307092 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:304904..307092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00840.1 vs.
Match: EWM20716.1 (acyl carrier protein [Nannochloropsis gaditana])

HSP 1 Score: 219.5 bits (558), Expect = 5.500e-54
Identity = 115/120 (95.83%), Postives = 116/120 (96.67%), Query Frame = 0 
Query:    1 MRVLAFFALLAAPALAFVPRMPAPVRARASLTLRFSGEYSEKVRAIVLENMGDDAKVQDYLKANGDDKAEFAAMGFDSLDLVEFSMAIQKEFDLPDLNEEDFANLKTIKDVVTMVEANKK 121
            MRVLAF ALLAAPA AFVPRMPAPVRARA LTLRFSGEYSEKVRAIVLENMGDDAKVQDYLKANGDD AEFAAMGFDSLDLVEFSMA+QKEFDLPDLNEEDFANLKTIKDVVTMVEANKK
Sbjct:    1 MRVLAFLALLAAPAFAFVPRMPAPVRARAGLTLRFSGEYSEKVRAIVLENMGDDAKVQDYLKANGDDTAEFAAMGFDSLDLVEFSMAVQKEFDLPDLNEEDFANLKTIKDVVTMVEANKK 120
The following BLAST results are available for this feature:
BLAST of NO30G00840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20716.15.500e-5495.83acyl carrier protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00840NO30G00840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00840.1NO30G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00840.1.cds1NO30G00840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00840.1.cds2NO30G00840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00840.1.cds3NO30G00840.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00840.1 ID=NO30G00840.1|Name=NO30G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1643bp
CTACAGTCACACCTTCCTCCTCTTCACTTAACCATGCGTGTCCTTGCTTT
CTTCGCCCTCCTGGCCGCACCCGCCCTGGCCTTCGTGCCCCGTATGCCCG
CCCCCGTGCGTGCCCGCGCCAGTCTCACCCTCCGATTCTCTGGAGAGTAC
AGCGAGAAGGTGCGCGCCATCGTGTTGGAGAACATGGGCGATGATGCCAA
GGTGCAGGACTACCTGAAGGCCAACGGTGATGATAAGGCCGAGTTCGCCG
CCATGGGCTTTGATTCTTTGGACTTGGTGGAGTTCTCCATGGCCATCCAG
AAGGAGTTCGACCTCCCGGACCTGAACGAGGAGGACTTCGCCAACCTCAA
GACGATCAAGGACGTGGTCACTATGGTGGAGGCCAACAAGAAGTAAACAC
ACAACGGCAGCGACAGCAGCAGCACCAGCAGCATGCACGAGGGGAGGAGG
AAGATGACTCGGTTGTTGGTTGGTGTGTTGACGTATTGTGATATGTGTGC
ATTCTCACCCTAATTGGTCTTCACATCTCCTCTCGTCTCCCTTTCCTGGG
AAGGGATGGCGGGAAGGAAAGAGGGAGGGAGTGCTTGTGTGTGCTATGTT
GTGTTTCGTGTGGCATGACTGGAGGTGGGCGATTAACAGCAAGAGGAGAA
ATTGGGCTGAATGAACGCTTAAGTCGTGTCTGTGTTTGTGACGATGAGTG
GGGAGGACGTAGCCTCATCCCCCTTTTCTTCCCGGTCGGTCTTTTTCGGC
CTTTTCCTCCTTCCCCTCCAAGGGTGGAAGGAGGAGGATGGACAGGGCGA
GAGACAAGAGAAGGATGGGGCTAGAGAATCCACACACAACTAGAGATAGA
AGTACTTTATCCTTGTTCTCCTTCTTGTTATTGACGTGTTGATTTTTGGT
CCTCTTCTTGCGCGCGATCTTTCTCTCGTTCGTCGATCTTTCGTCTTTTT
TTCTTTTGTCAACTCTCTCTCTCTTCACCGACGCCTCTTCGAAGAATCTA
TTTCCTCTCTACTTCTGCCCTCTCGTGTCTTAAATTTAATCCTCGCGGTT
TTCGTCTTCTCTCCCTCCACCACCAATCCCTTCTCCTTTCTCGTCCCCTT
CCACATCCCCCCCACCCCCTCCTCCTAAACCTGTTTCACTGTGGCCCTCC
GCGATGAAGATGCCCGATTGGTGCGTGCCCTGTCATATGTACGCATATAT
CTATAATTGTTTATACATATTTAAATTCTTTCCTTCCCTTCTCAAGCCCC
TGTGGCTTTGTCTCTATTCGTCTCCTTCTGCCCGCCTCCGCGTTCCTTCC
CCCCCCCTCCCTCACGGCCTCCCTCCTCACCTCGGGTGCCTGCGTCTCCT
GCCCTCGATCGAACCGCGCAGTGAATTCAGTTGTCACACGAGGATGTTCG
CCTGGGGCCGTGGGGTTGTTGCTGCTATGCTGCTCTTGTCGTCGAGGAGG
AGAGGTGACATGTCCTACGCACGCGCGGTGGAGATAGACAGGAAGGAAGG
AAGGGTATTGATTCAAATAGGCAGGGCACAGAAGCATGAATACATATACC
TTTGGCCTTGGGCGCTAGCCGGGAGGTCTCTTCATCGGAAGGGGTCGTGT
GGTTCGTCATCTCACTGGGTCGTGTGGATAGGCGATGGCCTGT
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protein sequence of NO30G00840.1

>NO30G00840.1-protein ID=NO30G00840.1-protein|Name=NO30G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MRVLAFFALLAAPALAFVPRMPAPVRARASLTLRFSGEYSEKVRAIVLEN
MGDDAKVQDYLKANGDDKAEFAAMGFDSLDLVEFSMAIQKEFDLPDLNEE
DFANLKTIKDVVTMVEANKK*
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mRNA from alignment at chr30:304904..307092+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00840.1 ID=NO30G00840.1|Name=NO30G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2189bp|location=Sequence derived from alignment at chr30:304904..307092+ (Nannochloropsis oceanica)
CTACAGTCACACCTTCCTCCTCTTCACTTAACCATGCGTGTCCTTGCTTT
CTTCGCCCTCCTGGCCGCACCCGCCCTGGCCTTCGTGCCCCGTATGCCCG
CCCCCGTGCGTGCCCGCGCCAGTCTCACCCTCCGATTCTCTGGAGAGTAC
AGCGAGAAGGTAAGCCACCTCTCTTTCCTTCATGTCCTATCTTGCGCCCT
CCTTCCCCATGCTTCTTCCCCGATATTTTGTGGTCAGTTCTTGGTGTGTC
ACCTTGGGGTGGGCGGGTGAACCGCAGCGATTTCTCTTTCAGGGATGTGG
GGGCTGGATGCCCGTCTTGGCTACCTTTCCCTTCCCTCCCTGGTCCCGTC
CCTTCTCCTCCCTTTTCACTTCTCTCTCTTTTTTTTCTTCCTCTCCCCCT
CCTCGAACTTCCCCTGGCCGAAAGTGATCCATGTCCCACTTTCACTTACC
CGCCCTCCCTCCCTCCCTCCCCCTCTCCCTCCAGGTGCGCGCCATCGTGT
TGGAGAACATGGGCGATGATGCCAAGGTGCAGGACTACCTGAAGGCCAAC
GGTGATGATAAGGCCGAGTTCGCCGCCATGGGCTTTGATTCTTTGGACTT
GGTGGAGTTCTCCATGGCCATCCAGAAGGTACGGGAACCTGCCTTCCTTC
TCTCCCTCCCTCCCAACCTACTTCCCTTCCATCACGGCGCCGAGCTCTCT
GTCTCCGATCTCATGGGTATATCGTTGTGTCTGCCTCGTCGAGCCCGTAG
TTTAGACATCGATATCATTCTCATGCACTCCATCAAATGAAAATTAATAT
TAATTTTCCACTCACATACTCTCCCCTCCCTTCCTTCCTCTCTTCTCAGG
AGTTCGACCTCCCGGACCTGAACGAGGAGGACTTCGCCAACCTCAAGACG
ATCAAGGACGTGGTCACTATGGTGGAGGCCAACAAGAAGTAAACACACAA
CGGCAGCGACAGCAGCAGCACCAGCAGCATGCACGAGGGGAGGAGGAAGA
TGACTCGGTTGTTGGTTGGTGTGTTGACGTATTGTGATATGTGTGCATTC
TCACCCTAATTGGTCTTCACATCTCCTCTCGTCTCCCTTTCCTGGGAAGG
GATGGCGGGAAGGAAAGAGGGAGGGAGTGCTTGTGTGTGCTATGTTGTGT
TTCGTGTGGCATGACTGGAGGTGGGCGATTAACAGCAAGAGGAGAAATTG
GGCTGAATGAACGCTTAAGTCGTGTCTGTGTTTGTGACGATGAGTGGGGA
GGACGTAGCCTCATCCCCCTTTTCTTCCCGGTCGGTCTTTTTCGGCCTTT
TCCTCCTTCCCCTCCAAGGGTGGAAGGAGGAGGATGGACAGGGCGAGAGA
CAAGAGAAGGATGGGGCTAGAGAATCCACACACAACTAGAGATAGAAGTA
CTTTATCCTTGTTCTCCTTCTTGTTATTGACGTGTTGATTTTTGGTCCTC
TTCTTGCGCGCGATCTTTCTCTCGTTCGTCGATCTTTCGTCTTTTTTTCT
TTTGTCAACTCTCTCTCTCTTCACCGACGCCTCTTCGAAGAATCTATTTC
CTCTCTACTTCTGCCCTCTCGTGTCTTAAATTTAATCCTCGCGGTTTTCG
TCTTCTCTCCCTCCACCACCAATCCCTTCTCCTTTCTCGTCCCCTTCCAC
ATCCCCCCCACCCCCTCCTCCTAAACCTGTTTCACTGTGGCCCTCCGCGA
TGAAGATGCCCGATTGGTGCGTGCCCTGTCATATGTACGCATATATCTAT
AATTGTTTATACATATTTAAATTCTTTCCTTCCCTTCTCAAGCCCCTGTG
GCTTTGTCTCTATTCGTCTCCTTCTGCCCGCCTCCGCGTTCCTTCCCCCC
CCCTCCCTCACGGCCTCCCTCCTCACCTCGGGTGCCTGCGTCTCCTGCCC
TCGATCGAACCGCGCAGTGAATTCAGTTGTCACACGAGGATGTTCGCCTG
GGGCCGTGGGGTTGTTGCTGCTATGCTGCTCTTGTCGTCGAGGAGGAGAG
GTGACATGTCCTACGCACGCGCGGTGGAGATAGACAGGAAGGAAGGAAGG
GTATTGATTCAAATAGGCAGGGCACAGAAGCATGAATACATATACCTTTG
GCCTTGGGCGCTAGCCGGGAGGTCTCTTCATCGGAAGGGGTCGTGTGGTT
CGTCATCTCACTGGGTCGTGTGGATAGGCGATGGCCTGT
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Coding sequence (CDS) from alignment at chr30:304904..307092+

>NO30G00840.1 ID=NO30G00840.1|Name=NO30G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=363bp|location=Sequence derived from alignment at chr30:304904..307092+ (Nannochloropsis oceanica)
ATGCGTGTCCTTGCTTTCTTCGCCCTCCTGGCCGCACCCGCCCTGGCCTT
CGTGCCCCGTATGCCCGCCCCCGTGCGTGCCCGCGCCAGTCTCACCCTCC
GATTCTCTGGAGAGTACAGCGAGAAGGTGCGCGCCATCGTGTTGGAGAAC
ATGGGCGATGATGCCAAGGTGCAGGACTACCTGAAGGCCAACGGTGATGA
TAAGGCCGAGTTCGCCGCCATGGGCTTTGATTCTTTGGACTTGGTGGAGT
TCTCCATGGCCATCCAGAAGGAGTTCGACCTCCCGGACCTGAACGAGGAG
GACTTCGCCAACCTCAAGACGATCAAGGACGTGGTCACTATGGTGGAGGC
CAACAAGAAGTAA
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Synonyms
Publications