NO30G00770, NO30G00770 (gene) Nannochloropsis oceanica

Overview
NameNO30G00770
Unique NameNO30G00770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1119
Alignment locationchr30:281528..282646 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:281528..282646 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO30G00770 vs. NCBI_GenBank
Match: EWM20611.1 (hypothetical protein Naga_101429g2 [Nannochloropsis gaditana])

HSP 1 Score: 87.4 bits (215), Expect = 1.000e-13
Identity = 50/126 (39.68%), Postives = 79/126 (62.70%), Query Frame = 0 
Query:  109 EAEEAQTQLLA-ALDRALHPYQTSLRHSLSSIYHADSRLSLSLKQAQSHLASSSHAQQRPINILEALRLAHRFRVVSSAPPGWEGGGREGGIFNFLPRHPYMPGSECLVASLLRKEHVRNQKEVRK 234
            + EE+ T LL   L ++L P+ T+LR +L  +Y + SRL  +LK +Q+   + + A++  + +LEALR++HR R  ++AP GW     EG    +LP  PYMPG+ECL ASLLR+  +  ++  R+
Sbjct:  135 QGEESHTLLLLNTLQQSLEPFHTALRRALQRLYASHSRLLDALKLSQAQRRAMAAAERHSVPLLEALRVSHRLRSTTAAPRGWS----EGVSLPYLPPSPYMPGNECLTASLLRRVQLPRKRGGRE 256
The following BLAST results are available for this feature:
BLAST of NO30G00770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20611.11.000e-1339.68hypothetical protein Naga_101429g2 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR102ngnoR102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00770.1NO30G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633362gene_9234Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101429g2gene9794Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00770.1NO30G00770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00770 ID=NO30G00770|Name=NO30G00770|organism=Nannochloropsis oceanica|type=gene|length=1119bp
ATGCCCTCGGGCATAGAGGCATGTACGGCGCCCGCGGACATAGAGACGCG
ACTCCGGGCCTTAATCAAAAAAGCACTTGAGGAAGAAAAGAGCCGTATGG
ACAACGACGACAACGACGACGCCGATGAGAAGCAAGACAACACCACCAAT
CACGAGAAGAGCAGCACCAACGGTAGTAGTAAAGGACAAAGTCTCTCTGT
CCGTCGTCTGGCCACGGCCCTTCACAAGGCCGAAGCTCAGTTGCGGACCG
CCATCCTCATGCAGCAGCGTCAGTCCACCACCAGCACCGCCTCTACAACC
CACGACGATGACAACTTCGAAGTGGAAGCAGAAGAAGCCCAAACTCAACT
CCTCGCCGCCCTGGACCGCGCCCTCCACCCCTATCAGACATCCCTACGTC
ACTCTCTCTCCTCAATCTACCACGCCGACTCCCGCCTCTCCCTCTCCCTC
AAGCAAGCCCAGAGCCACCTTGCCTCCTCTTCCCACGCTCAACAACGGCC
GATTAATATCCTAGAAGCTCTACGGCTCGCACATCGTTTCCGTGTCGTGT
CATCAGCACCGCCTGGGTGGGAAGGGGGAGGGCGGGAGGGAGGTATATTT
AATTTCTTGCCCCGTCACCCCTACATGCCTGGAAGCGAGTGCTTGGTAGC
CTCGTTGCTCAGGAAAGAACACGTCCGGAACCAGAAGGAGGTTCGAAAGA
GGAAAAAGAGAATGCGAGAAGCAGAAAGGAAAGGGAAGGCGGGAGGGAAG
GAGGCGGATGCGATGGACATTGTCAGACAGCTCTCAGAGAGTGGCTCGCT
TGGTGCCCCGCCCCCCGGCTGGCAACCTGGGCAGGAGCTGGCGTTGAACG
ATGAGGTGCTGCAGAAATTGAGGAAACAGCAGCAGCAGCAGCAGTTGGAG
GAAATGGAAAGGGACAAGGTGAAAGAGCCAGTTTTGGGAAAGTCGGATGG
TACTGCGGCTGCAGAAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGAGAGAGGAGGAGAAGGGATTGGAGGAAGGGCTGCGCAGGCGAAGCCG
AAGAAGCAGACCTTTATGGATTCGTCATCGGAAGAGGAGGAAGGGGACGA
GGATGAGGGAGAGGAGTAG
back to top

protein sequence of NO30G00770.1

>NO30G00770.1-protein ID=NO30G00770.1-protein|Name=NO30G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MPSGIEACTAPADIETRLRALIKKALEEEKSRMDNDDNDDADEKQDNTTN
HEKSSTNGSSKGQSLSVRRLATALHKAEAQLRTAILMQQRQSTTSTASTT
HDDDNFEVEAEEAQTQLLAALDRALHPYQTSLRHSLSSIYHADSRLSLSL
KQAQSHLASSSHAQQRPINILEALRLAHRFRVVSSAPPGWEGGGREGGIF
NFLPRHPYMPGSECLVASLLRKEHVRNQKEVRKRKKRMREAERKGKAGGK
EADAMDIVRQLSESGSLGAPPPGWQPGQELALNDEVLQKLRKQQQQQQLE
EMERDKVKEPVLGKSDGTAAAEGGGGGGGGGGGGERGGEGIGGRAAQAKP
KKQTFMDSSSEEEEGDEDEGEE*
back to top
Synonyms
Publications