NO30G00770.1, NO30G00770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00770.1
Unique NameNO30G00770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1119
Alignment locationchr30:281528..282646 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:281528..282646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO30G00770.1 vs.
Match: EWM20611.1 (hypothetical protein Naga_101429g2 [Nannochloropsis gaditana])

HSP 1 Score: 77.4 bits (189), Expect = 1.000e-10
Identity = 84/280 (30.00%), Postives = 141/280 (50.36%), Query Frame = 0 
Query:   11 PADIETRLRALIKKALEE-EKSRMDNDDNDDADEKQDNTTNHEKSSTNGSSKG--QSLSVRRLATALH-------KAEAQLRTAILMQQRQST------------TSTASTTHDDDNFEV------------EAEEAQTQLLA-ALDRALHPYQTSLRHSLSSIYHADSRLSLSLKQAQSHLASSSHAQQRPINILEALRLAHRFRVVSSAPPGWEGGGREGGIFNFLPRHPYMPGSECLVASLLRKEHV---RNQKEVRKRKKRMREAERKGKAGGKEA 253
            P+D++ +++ L++ AL   E+S  D   +     +  +T      S  G ++   ++ SVR     LH       + EA +R  IL +  Q              TS ++   +D  +++            + EE+ T LL   L ++L P+ T+LR +L  +Y + SRL  +LK +Q+   + + A++  + +LEALR++HR R  ++AP GW     EG    +LP  PYMPG+ECL ASLLR+  +   R  +EV + ++  RE    G+ GGK+A
Sbjct:    3 PSDVKQQVQCLLRTALHTTEESVSDEGPSFMVLGEHSSTPAAMHVSRPGENREGPEASSVRAPLAFLHALRLEIQRIEAHVRRQILARNSQKAPREASPVSGVPRTSGSAQAGNDVRWDLFARPTQPLKVPSQGEESHTLLLLNTLQQSLEPFHTALRRALQRLYASHSRLLDALKLSQAQRRAMAAAERHSVPLLEALRVSHRLRSTTAAPRGWS----EGVSLPYLPPSPYMPGNECLTASLLRRVQLPRKRGGREVAEEEEGRREG---GREGGKQA 275
The following BLAST results are available for this feature:
BLAST of NO30G00770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20611.11.000e-1030.00hypothetical protein Naga_101429g2 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00770NO30G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00770.1NO30G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00770.1.cds1NO30G00770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00770.1 ID=NO30G00770.1|Name=NO30G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1119bp
ATGCCCTCGGGCATAGAGGCATGTACGGCGCCCGCGGACATAGAGACGCG
ACTCCGGGCCTTAATCAAAAAAGCACTTGAGGAAGAAAAGAGCCGTATGG
ACAACGACGACAACGACGACGCCGATGAGAAGCAAGACAACACCACCAAT
CACGAGAAGAGCAGCACCAACGGTAGTAGTAAAGGACAAAGTCTCTCTGT
CCGTCGTCTGGCCACGGCCCTTCACAAGGCCGAAGCTCAGTTGCGGACCG
CCATCCTCATGCAGCAGCGTCAGTCCACCACCAGCACCGCCTCTACAACC
CACGACGATGACAACTTCGAAGTGGAAGCAGAAGAAGCCCAAACTCAACT
CCTCGCCGCCCTGGACCGCGCCCTCCACCCCTATCAGACATCCCTACGTC
ACTCTCTCTCCTCAATCTACCACGCCGACTCCCGCCTCTCCCTCTCCCTC
AAGCAAGCCCAGAGCCACCTTGCCTCCTCTTCCCACGCTCAACAACGGCC
GATTAATATCCTAGAAGCTCTACGGCTCGCACATCGTTTCCGTGTCGTGT
CATCAGCACCGCCTGGGTGGGAAGGGGGAGGGCGGGAGGGAGGTATATTT
AATTTCTTGCCCCGTCACCCCTACATGCCTGGAAGCGAGTGCTTGGTAGC
CTCGTTGCTCAGGAAAGAACACGTCCGGAACCAGAAGGAGGTTCGAAAGA
GGAAAAAGAGAATGCGAGAAGCAGAAAGGAAAGGGAAGGCGGGAGGGAAG
GAGGCGGATGCGATGGACATTGTCAGACAGCTCTCAGAGAGTGGCTCGCT
TGGTGCCCCGCCCCCCGGCTGGCAACCTGGGCAGGAGCTGGCGTTGAACG
ATGAGGTGCTGCAGAAATTGAGGAAACAGCAGCAGCAGCAGCAGTTGGAG
GAAATGGAAAGGGACAAGGTGAAAGAGCCAGTTTTGGGAAAGTCGGATGG
TACTGCGGCTGCAGAAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGAGAGAGGAGGAGAAGGGATTGGAGGAAGGGCTGCGCAGGCGAAGCCG
AAGAAGCAGACCTTTATGGATTCGTCATCGGAAGAGGAGGAAGGGGACGA
GGATGAGGGAGAGGAGTAG
back to top

protein sequence of NO30G00770.1

>NO30G00770.1-protein ID=NO30G00770.1-protein|Name=NO30G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MPSGIEACTAPADIETRLRALIKKALEEEKSRMDNDDNDDADEKQDNTTN
HEKSSTNGSSKGQSLSVRRLATALHKAEAQLRTAILMQQRQSTTSTASTT
HDDDNFEVEAEEAQTQLLAALDRALHPYQTSLRHSLSSIYHADSRLSLSL
KQAQSHLASSSHAQQRPINILEALRLAHRFRVVSSAPPGWEGGGREGGIF
NFLPRHPYMPGSECLVASLLRKEHVRNQKEVRKRKKRMREAERKGKAGGK
EADAMDIVRQLSESGSLGAPPPGWQPGQELALNDEVLQKLRKQQQQQQLE
EMERDKVKEPVLGKSDGTAAAEGGGGGGGGGGGGERGGEGIGGRAAQAKP
KKQTFMDSSSEEEEGDEDEGEE*
back to top

mRNA from alignment at chr30:281528..282646+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00770.1 ID=NO30G00770.1|Name=NO30G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1119bp|location=Sequence derived from alignment at chr30:281528..282646+ (Nannochloropsis oceanica)
ATGCCCTCGGGCATAGAGGCATGTACGGCGCCCGCGGACATAGAGACGCG
ACTCCGGGCCTTAATCAAAAAAGCACTTGAGGAAGAAAAGAGCCGTATGG
ACAACGACGACAACGACGACGCCGATGAGAAGCAAGACAACACCACCAAT
CACGAGAAGAGCAGCACCAACGGTAGTAGTAAAGGACAAAGTCTCTCTGT
CCGTCGTCTGGCCACGGCCCTTCACAAGGCCGAAGCTCAGTTGCGGACCG
CCATCCTCATGCAGCAGCGTCAGTCCACCACCAGCACCGCCTCTACAACC
CACGACGATGACAACTTCGAAGTGGAAGCAGAAGAAGCCCAAACTCAACT
CCTCGCCGCCCTGGACCGCGCCCTCCACCCCTATCAGACATCCCTACGTC
ACTCTCTCTCCTCAATCTACCACGCCGACTCCCGCCTCTCCCTCTCCCTC
AAGCAAGCCCAGAGCCACCTTGCCTCCTCTTCCCACGCTCAACAACGGCC
GATTAATATCCTAGAAGCTCTACGGCTCGCACATCGTTTCCGTGTCGTGT
CATCAGCACCGCCTGGGTGGGAAGGGGGAGGGCGGGAGGGAGGTATATTT
AATTTCTTGCCCCGTCACCCCTACATGCCTGGAAGCGAGTGCTTGGTAGC
CTCGTTGCTCAGGAAAGAACACGTCCGGAACCAGAAGGAGGTTCGAAAGA
GGAAAAAGAGAATGCGAGAAGCAGAAAGGAAAGGGAAGGCGGGAGGGAAG
GAGGCGGATGCGATGGACATTGTCAGACAGCTCTCAGAGAGTGGCTCGCT
TGGTGCCCCGCCCCCCGGCTGGCAACCTGGGCAGGAGCTGGCGTTGAACG
ATGAGGTGCTGCAGAAATTGAGGAAACAGCAGCAGCAGCAGCAGTTGGAG
GAAATGGAAAGGGACAAGGTGAAAGAGCCAGTTTTGGGAAAGTCGGATGG
TACTGCGGCTGCAGAAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGAGAGAGGAGGAGAAGGGATTGGAGGAAGGGCTGCGCAGGCGAAGCCG
AAGAAGCAGACCTTTATGGATTCGTCATCGGAAGAGGAGGAAGGGGACGA
GGATGAGGGAGAGGAGTAG
back to top

Coding sequence (CDS) from alignment at chr30:281528..282646+

>NO30G00770.1 ID=NO30G00770.1|Name=NO30G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=1119bp|location=Sequence derived from alignment at chr30:281528..282646+ (Nannochloropsis oceanica)
ATGCCCTCGGGCATAGAGGCATGTACGGCGCCCGCGGACATAGAGACGCG
ACTCCGGGCCTTAATCAAAAAAGCACTTGAGGAAGAAAAGAGCCGTATGG
ACAACGACGACAACGACGACGCCGATGAGAAGCAAGACAACACCACCAAT
CACGAGAAGAGCAGCACCAACGGTAGTAGTAAAGGACAAAGTCTCTCTGT
CCGTCGTCTGGCCACGGCCCTTCACAAGGCCGAAGCTCAGTTGCGGACCG
CCATCCTCATGCAGCAGCGTCAGTCCACCACCAGCACCGCCTCTACAACC
CACGACGATGACAACTTCGAAGTGGAAGCAGAAGAAGCCCAAACTCAACT
CCTCGCCGCCCTGGACCGCGCCCTCCACCCCTATCAGACATCCCTACGTC
ACTCTCTCTCCTCAATCTACCACGCCGACTCCCGCCTCTCCCTCTCCCTC
AAGCAAGCCCAGAGCCACCTTGCCTCCTCTTCCCACGCTCAACAACGGCC
GATTAATATCCTAGAAGCTCTACGGCTCGCACATCGTTTCCGTGTCGTGT
CATCAGCACCGCCTGGGTGGGAAGGGGGAGGGCGGGAGGGAGGTATATTT
AATTTCTTGCCCCGTCACCCCTACATGCCTGGAAGCGAGTGCTTGGTAGC
CTCGTTGCTCAGGAAAGAACACGTCCGGAACCAGAAGGAGGTTCGAAAGA
GGAAAAAGAGAATGCGAGAAGCAGAAAGGAAAGGGAAGGCGGGAGGGAAG
GAGGCGGATGCGATGGACATTGTCAGACAGCTCTCAGAGAGTGGCTCGCT
TGGTGCCCCGCCCCCCGGCTGGCAACCTGGGCAGGAGCTGGCGTTGAACG
ATGAGGTGCTGCAGAAATTGAGGAAACAGCAGCAGCAGCAGCAGTTGGAG
GAAATGGAAAGGGACAAGGTGAAAGAGCCAGTTTTGGGAAAGTCGGATGG
TACTGCGGCTGCAGAAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGAGAGAGGAGGAGAAGGGATTGGAGGAAGGGCTGCGCAGGCGAAGCCG
AAGAAGCAGACCTTTATGGATTCGTCATCGGAAGAGGAGGAAGGGGACGA
GGATGAGGGAGAGGAGTAG
back to top
Synonyms
Publications