NO30G00660, NO30G00660 (gene) Nannochloropsis oceanica

Overview
NameNO30G00660
Unique NameNO30G00660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length594
Alignment locationchr30:247305..247898 -

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Properties
Property NameValue
DescriptionRna binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:247305..247898 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
IPR008111RNA-bd_8
Homology
[Close]
BLAST of NO30G00660 vs. NCBI_GenBank
Match: EWM20603.1 (rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 164.9 bits (416), Expect = 2.600e-37
Identity = 113/183 (61.75%), Postives = 129/183 (70.49%), Query Frame = 0 
Query:    6 RHEEEDLDFDEENEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNSSGMPKVKGRGHQSGEDKXXXXXXXXXXXXXXXGEGEIGDPARSVEGWVLIVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFLKKNEAEKAKEGMDKEEMYGKEVRVDWAFVHGGRG 189
            RH++E++DFDEE E             XXXXXXXXXXXXXXXXXXX    + S     VKGRGH+S E++               G GE G  A+S+EGWV++VTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEF  + EAE A EGM+ EEMYGK+VRVDWAF+    G
Sbjct:    5 RHDDEEVDFDEEGERGGGDITSSLDPEXXXXXXXXXXXXXXXXXXXKSEGQTSL---HVKGRGHRSQEERGEGGRPPSFEVLGGEGGGE-GGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFTLRKEAEAAIEGMEGEEMYGKDVRVDWAFMQEASG 183
[Close]
BLAST of NO30G00660 vs. NCBI_GenBank
Match: CBJ30418.1 (RNA-binding protein, putative [Ectocarpus siliculosus])

HSP 1 Score: 129.0 bits (323), Expect = 1.600e-26
Identity = 61/124 (49.19%), Postives = 81/124 (65.32%), Query Frame = 0 
Query:   65 KGRGHQSGEDKXXXXXXXXXXXXXXXGEGEIGDPARSVEGWVLIVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFLKKNEAEKAKEGMDKEEMYGKEVRVDWAFVHGGRG 189
            KGRGHQ G  +                 G  G P RSVEGW+L V  +HEEAQED+++D+F E+G V+N+ +NLDRRTGFVKGY LVEF KK EA+ A + MD  ++  +++ V WAF+ GG+G
Sbjct:   61 KGRGHQGGSMEVEDRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQSAIDEMDGSQLLEQDISVSWAFMRGGKG 184
[Close]
BLAST of NO30G00660 vs. NCBI_GenBank
Match: XP_007513037.1 (RNA-binding protein 8A [Bathycoccus prasinos] >CCO16595.1 RNA-binding protein 8A [Bathycoccus prasinos])

HSP 1 Score: 126.7 bits (317), Expect = 7.900e-26
Identity = 62/122 (50.82%), Postives = 84/122 (68.85%), Query Frame = 0 
Query:   65 KGRGHQSGE--DKXXXXXXXXXXXXXXXGEGEIGDPARSVEGWVLIVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFLKKNEAEKAKEGMDKEEMYGKEVRVDWAFVH 185
            KGRG ++ +  D                 EGE G P +S+EGWV++VTG+HEEAQE++V + FG+FGE+ N+ +NLDRRTGFVKGY L+E+ +K EA+ A E MD + M  +EVRVDWAFV+
Sbjct:   24 KGRGFENADIIDDEVKHSRNDRYETLRDSEGERGQPQKSIEGWVVLVTGVHEEAQEEDVHENFGDFGEISNLHLNLDRRTGFVKGYCLIEYKEKEEAKSAIENMDGKLMLDQEVRVDWAFVN 145
[Close]
BLAST of NO30G00660 vs. NCBI_GenBank
Match: XP_023333845.1 (RNA-binding protein 8A-like [Eurytemora affinis])

HSP 1 Score: 125.2 bits (313), Expect = 2.300e-25
Identity = 58/96 (60.42%), Postives = 75/96 (78.12%), Query Frame = 0 
Query:   92 EGEIGDPARSVEGWVLIVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFLKKNEAEKAKEGMDKEEMYGKEVRVDWAFVHGGR 188
            EGE G P RS+EGW+L VTG+HEEAQED++ D+F EFGE++N+ +NLDRRTGF+KGYALVE+    EA  AKE +D  ++ G+ + VDWAFV G R
Sbjct:   57 EGEPG-PQRSIEGWILFVTGIHEEAQEDDIHDKFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALSAKEELDGSDILGQNIAVDWAFVKGPR 151
[Close]
BLAST of NO30G00660 vs. NCBI_GenBank
Match: XP_010544177.1 (PREDICTED: RNA-binding protein 8A-B isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 124.0 bits (310), Expect = 5.100e-25
Identity = 61/127 (48.03%), Postives = 83/127 (65.35%), Query Frame = 0 
Query:   59 SGMPKVKGRGHQSGEDKXXXXXXXXXXXXXXXGEGEIGDPARSVEGWVLIVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFLKKNEAEKAKEGMDKEEMYGKEVRVDWAFVHG 186
            S   K KGRG + G D                 +G  G P RS+EGW+++ TG+HEEAQED++++ FGEFGE++N+ +NLDRRTGFVKGYAL+E+ K  EA+KA   M+  E+  + V VDWAF +G
Sbjct:   50 SAQKKTKGRGFREGPDSDRQRRLSSRDFDSLGSDGGPG-PQRSIEGWIILATGVHEEAQEDDLLNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYEKFEEAQKAISEMNGAELLTQTVNVDWAFSNG 175
[Close]
BLAST of NO30G00660 vs. NCBI_GenBank
Match: XP_010544178.1 (PREDICTED: RNA-binding protein 8A-B isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 124.0 bits (310), Expect = 5.100e-25
Identity = 61/127 (48.03%), Postives = 83/127 (65.35%), Query Frame = 0 
Query:   59 SGMPKVKGRGHQSGEDKXXXXXXXXXXXXXXXGEGEIGDPARSVEGWVLIVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFLKKNEAEKAKEGMDKEEMYGKEVRVDWAFVHG 186
            S   K KGRG + G D                 +G  G P RS+EGW+++ TG+HEEAQED++++ FGEFGE++N+ +NLDRRTGFVKGYAL+E+ K  EA+KA   M+  E+  + V VDWAF +G
Sbjct:   50 SAQKKTKGRGFREGPDSDRQRRLSSRDFDSLGSDGGPG-PQRSIEGWIILATGVHEEAQEDDLLNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYEKFEEAQKAISEMNGAELLTQTVNVDWAFSNG 175
[Close]
BLAST of NO30G00660 vs. NCBI_GenBank
Match: ADD24396.1 (RNA-binding protein 8A [Lepeophtheirus salmonis])

HSP 1 Score: 123.2 bits (308), Expect = 8.800e-25
Identity = 55/88 (62.50%), Postives = 70/88 (79.55%), Query Frame = 0 
Query:   98 PARSVEGWVLIVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFLKKNEAEKAKEGMDKEEMYGKEVRVDWAFVHG 186
            P RSVEGW+L VTG+HEEAQED++ D F +FGE++NV +NLDRRTGF+KGYALVEF    EA  AKE +D  ++ G+++ VDWAFV G
Sbjct:   66 PQRSVEGWILFVTGIHEEAQEDDIHDSFSDFGEIKNVHLNLDRRTGFLKGYALVEFETYKEALSAKESLDGSDLLGQKITVDWAFVKG 153
[Close]
BLAST of NO30G00660 vs. NCBI_GenBank
Match: XP_010461982.1 (PREDICTED: RNA-binding protein 8A-B [Camelina sativa])

HSP 1 Score: 122.9 bits (307), Expect = 1.100e-24
Identity = 61/133 (45.86%), Postives = 86/133 (64.66%), Query Frame = 0 
Query:   58 SSGMPKVKGRGHQSGEDKXXXXXXXXXXXXXXXGEGEIGDPARSVEGWVLIVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFLKKNEAEKAKEGMDKEEMYGKEVRVDWAF----VHGG 187
            S+   K+KGRG +   D                 +G  G P RSVEGW+++V G+HEEAQ+D++++ FG+FGE++N+ +NLDRRTGFVKGYAL+++ KK EA+KA   M+  E+  + V VDWAF     HGG
Sbjct:   51 SAAQKKIKGRGFRDERDSDRQRRLSSRDFESLGSDGGHG-PQRSVEGWIILVAGVHEEAQDDDLLNAFGDFGEIKNLHLNLDRRTGFVKGYALIKYEKKEEAQKAISAMNGAELLTQNVSVDWAFSSGPTHGG 182
[Close]
BLAST of NO30G00660 vs. NCBI_GenBank
Match: XP_022961208.1 (RNA-binding protein Y14-like [Cucurbita moschata] >XP_023516370.1 RNA-binding protein Y14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.9 bits (307), Expect = 1.100e-24
Identity = 63/129 (48.84%), Postives = 82/129 (63.57%), Query Frame = 0 
Query:   58 SSGMPKVKGRGHQSGEDK-XXXXXXXXXXXXXXXGEGEIGDPARSVEGWVLIVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFLKKNEAEKAKEGMDKEEMYGKEVRVDWAFVHG 186
            + G  K KGRG +   D+                G G    P RS+EGW+++VTG+HEEAQED++ + FGEFGE+RN+ +NLDRRTGFVKGYAL+E+    EAEKA   MD  E+  + + VDWAF HG
Sbjct:   51 AGGPKKTKGRGFREESDRNTRLTGSDFDSLKSADGPG----PQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHG 175
[Close]
BLAST of NO30G00660 vs. NCBI_GenBank
Match: XP_022988215.1 (RNA-binding protein Y14A-like [Cucurbita maxima])

HSP 1 Score: 122.9 bits (307), Expect = 1.100e-24
Identity = 63/129 (48.84%), Postives = 82/129 (63.57%), Query Frame = 0 
Query:   58 SSGMPKVKGRGHQSGEDK-XXXXXXXXXXXXXXXGEGEIGDPARSVEGWVLIVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFLKKNEAEKAKEGMDKEEMYGKEVRVDWAFVHG 186
            + G  K KGRG +   D+                G G    P RS+EGW+++VTG+HEEAQED++ + FGEFGE+RN+ +NLDRRTGFVKGYAL+E+    EAEKA   MD  E+  + + VDWAF HG
Sbjct:   51 AGGPKKTKGRGFRQESDRNTRLTGSDFDSLKSADGPG----PQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHG 175
The following BLAST results are available for this feature:
BLAST of NO30G00660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20603.12.600e-3761.75rna binding protein [Nannochloropsis gaditana][more]
CBJ30418.11.600e-2649.19RNA-binding protein, putative [Ectocarpus siliculo... [more]
XP_007513037.17.900e-2650.82RNA-binding protein 8A [Bathycoccus prasinos] >CCO... [more]
XP_023333845.12.300e-2560.42RNA-binding protein 8A-like [Eurytemora affinis][more]
XP_010544177.15.100e-2548.03PREDICTED: RNA-binding protein 8A-B isoform X1 [Ta... [more]
XP_010544178.15.100e-2548.03PREDICTED: RNA-binding protein 8A-B isoform X2 [Ta... [more]
ADD24396.18.800e-2562.50RNA-binding protein 8A [Lepeophtheirus salmonis][more]
XP_010461982.11.100e-2445.86PREDICTED: RNA-binding protein 8A-B [Camelina sati... [more]
XP_022961208.11.100e-2448.84RNA-binding protein Y14-like [Cucurbita moschata] ... [more]
XP_022988215.11.100e-2448.84RNA-binding protein Y14A-like [Cucurbita maxima][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR102ngnoR102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00660.1NO30G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605857gene_9248Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101497g1gene9804Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00660.1NO30G00660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00660 ID=NO30G00660|Name=NO30G00660|organism=Nannochloropsis oceanica|type=gene|length=594bp
ATGGCAGCCCCGGCGCGCCACGAAGAGGAAGACTTGGATTTTGACGAGGA
AAATGAAGCTGCGCCTGCAACAGCTCCTGCCCCTCCCTCTTCCCCTCCCT
CCGCTGCCCCTTCTTCCCCACCAAACAAAAAGACAAGGACAAGCAAGGAA
CAGTCGGATGAGAACAGGAACAGCAGTGGAATGCCTAAAGTCAAAGGACG
TGGCCACCAGAGCGGCGAAGATAAAAGAGGGGGAGGGGGAGGGCACTACG
AGAGCAGAGAAGACGAGGAAGGAGAAGGGGAGATAGGCGACCCTGCGCGT
TCTGTGGAAGGGTGGGTGTTGATCGTCACGGGCTTGCACGAAGAGGCACA
AGAGGATGAGGTTGTGGATCGGTTTGGGGAGTTTGGTGAGGTGAGGAATG
TGCAGATGAACCTTGATCGACGCACGGGCTTTGTGAAGGGTTATGCGCTA
GTGGAGTTTTTGAAGAAAAATGAAGCGGAAAAGGCAAAGGAGGGAATGGA
TAAGGAAGAGATGTATGGGAAGGAGGTGAGAGTGGATTGGGCGTTTGTCC
ATGGAGGGAGAGGAGGTGGAAGGAGGGGGGGAGGACGACGTTAA
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protein sequence of NO30G00660.1

>NO30G00660.1-protein ID=NO30G00660.1-protein|Name=NO30G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MAAPARHEEEDLDFDEENEAAPATAPAPPSSPPSAAPSSPPNKKTRTSKE
QSDENRNSSGMPKVKGRGHQSGEDKRGGGGGHYESREDEEGEGEIGDPAR
SVEGWVLIVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYAL
VEFLKKNEAEKAKEGMDKEEMYGKEVRVDWAFVHGGRGGGRRGGGRR*
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Synonyms
Publications