NO30G00660.1, NO30G00660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00660.1
Unique NameNO30G00660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length594
Alignment locationchr30:247305..247898 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:247305..247898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00660.1 vs.
Match: EWM20603.1 (rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 167.5 bits (423), Expect = 4.000e-38
Identity = 110/188 (58.51%), Postives = 131/188 (69.68%), Query Frame = 0 
Query:    6 RHEEEDLDFDEENE--AAPATAPAPPSS--PPSAAPSSPPNKKTRTSKEQSDENRNSSGMPKVKGRGHQSGEDKRGGGGGHYESREDEEGEGE-IGDPARSVEGWVLIVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFLKKNEAEKAKEGMDKEEMYGKEVRVDWAFVHGGRG 189
            RH++E++DFDEE E      T+   P    PPS++ S PP    R  K++  E + S     VKGRGH+S E++  G GG   S E   GEG   G  A+S+EGWV++VTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEF  + EAE A EGM+ EEMYGK+VRVDWAF+    G
Sbjct:    5 RHDDEEVDFDEEGERGGGDITSSLDPEGHPPPSSSSSYPP----RALKKRKSEGQTSL---HVKGRGHRSQEER--GEGGRPPSFEVLGGEGGGEGGAAKSIEGWVIMVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYALVEFTLRKEAEAAIEGMEGEEMYGKDVRVDWAFMQEASG 183
The following BLAST results are available for this feature:
BLAST of NO30G00660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20603.14.000e-3858.51rna binding protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00660NO30G00660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00660.1NO30G00660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00660.1.cds1NO30G00660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00660.1 ID=NO30G00660.1|Name=NO30G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=594bp
ATGGCAGCCCCGGCGCGCCACGAAGAGGAAGACTTGGATTTTGACGAGGA
AAATGAAGCTGCGCCTGCAACAGCTCCTGCCCCTCCCTCTTCCCCTCCCT
CCGCTGCCCCTTCTTCCCCACCAAACAAAAAGACAAGGACAAGCAAGGAA
CAGTCGGATGAGAACAGGAACAGCAGTGGAATGCCTAAAGTCAAAGGACG
TGGCCACCAGAGCGGCGAAGATAAAAGAGGGGGAGGGGGAGGGCACTACG
AGAGCAGAGAAGACGAGGAAGGAGAAGGGGAGATAGGCGACCCTGCGCGT
TCTGTGGAAGGGTGGGTGTTGATCGTCACGGGCTTGCACGAAGAGGCACA
AGAGGATGAGGTTGTGGATCGGTTTGGGGAGTTTGGTGAGGTGAGGAATG
TGCAGATGAACCTTGATCGACGCACGGGCTTTGTGAAGGGTTATGCGCTA
GTGGAGTTTTTGAAGAAAAATGAAGCGGAAAAGGCAAAGGAGGGAATGGA
TAAGGAAGAGATGTATGGGAAGGAGGTGAGAGTGGATTGGGCGTTTGTCC
ATGGAGGGAGAGGAGGTGGAAGGAGGGGGGGAGGACGACGTTAA
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protein sequence of NO30G00660.1

>NO30G00660.1-protein ID=NO30G00660.1-protein|Name=NO30G00660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MAAPARHEEEDLDFDEENEAAPATAPAPPSSPPSAAPSSPPNKKTRTSKE
QSDENRNSSGMPKVKGRGHQSGEDKRGGGGGHYESREDEEGEGEIGDPAR
SVEGWVLIVTGLHEEAQEDEVVDRFGEFGEVRNVQMNLDRRTGFVKGYAL
VEFLKKNEAEKAKEGMDKEEMYGKEVRVDWAFVHGGRGGGRRGGGRR*
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mRNA from alignment at chr30:247305..247898-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00660.1 ID=NO30G00660.1|Name=NO30G00660.1|organism=Nannochloropsis oceanica|type=mRNA|length=594bp|location=Sequence derived from alignment at chr30:247305..247898- (Nannochloropsis oceanica)
ATGGCAGCCCCGGCGCGCCACGAAGAGGAAGACTTGGATTTTGACGAGGA
AAATGAAGCTGCGCCTGCAACAGCTCCTGCCCCTCCCTCTTCCCCTCCCT
CCGCTGCCCCTTCTTCCCCACCAAACAAAAAGACAAGGACAAGCAAGGAA
CAGTCGGATGAGAACAGGAACAGCAGTGGAATGCCTAAAGTCAAAGGACG
TGGCCACCAGAGCGGCGAAGATAAAAGAGGGGGAGGGGGAGGGCACTACG
AGAGCAGAGAAGACGAGGAAGGAGAAGGGGAGATAGGCGACCCTGCGCGT
TCTGTGGAAGGGTGGGTGTTGATCGTCACGGGCTTGCACGAAGAGGCACA
AGAGGATGAGGTTGTGGATCGGTTTGGGGAGTTTGGTGAGGTGAGGAATG
TGCAGATGAACCTTGATCGACGCACGGGCTTTGTGAAGGGTTATGCGCTA
GTGGAGTTTTTGAAGAAAAATGAAGCGGAAAAGGCAAAGGAGGGAATGGA
TAAGGAAGAGATGTATGGGAAGGAGGTGAGAGTGGATTGGGCGTTTGTCC
ATGGAGGGAGAGGAGGTGGAAGGAGGGGGGGAGGACGACGTTAA
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Coding sequence (CDS) from alignment at chr30:247305..247898-

>NO30G00660.1 ID=NO30G00660.1|Name=NO30G00660.1|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at chr30:247305..247898- (Nannochloropsis oceanica)
ATGGCAGCCCCGGCGCGCCACGAAGAGGAAGACTTGGATTTTGACGAGGA
AAATGAAGCTGCGCCTGCAACAGCTCCTGCCCCTCCCTCTTCCCCTCCCT
CCGCTGCCCCTTCTTCCCCACCAAACAAAAAGACAAGGACAAGCAAGGAA
CAGTCGGATGAGAACAGGAACAGCAGTGGAATGCCTAAAGTCAAAGGACG
TGGCCACCAGAGCGGCGAAGATAAAAGAGGGGGAGGGGGAGGGCACTACG
AGAGCAGAGAAGACGAGGAAGGAGAAGGGGAGATAGGCGACCCTGCGCGT
TCTGTGGAAGGGTGGGTGTTGATCGTCACGGGCTTGCACGAAGAGGCACA
AGAGGATGAGGTTGTGGATCGGTTTGGGGAGTTTGGTGAGGTGAGGAATG
TGCAGATGAACCTTGATCGACGCACGGGCTTTGTGAAGGGTTATGCGCTA
GTGGAGTTTTTGAAGAAAAATGAAGCGGAAAAGGCAAAGGAGGGAATGGA
TAAGGAAGAGATGTATGGGAAGGAGGTGAGAGTGGATTGGGCGTTTGTCC
ATGGAGGGAGAGGAGGTGGAAGGAGGGGGGGAGGACGACGTTAA
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Synonyms
Publications