NO30G00490, NO30G00490 (gene) Nannochloropsis oceanica

Overview
NameNO30G00490
Unique NameNO30G00490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2030
Alignment locationchr30:198088..200117 -

Link to JBrowse

Properties
Property NameValue
Descriptionnucleic acid binding;RNA binding
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:198088..200117 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002999Tudor
Homology
BLAST of NO30G00490 vs. NCBI_GenBank
Match: OQR94512.1 (hypothetical protein ACHHYP_01225 [Achlya hypogyna])

HSP 1 Score: 105.9 bits (263), Expect = 2.700e-19
Identity = 105/366 (28.69%), Postives = 151/366 (41.26%), Query Frame = 0
Query:    3 SLEELQAALATYKTQTDQVQSLLDLDPSNEAYLTLKSDLQAAIKLTHDLIRTQEDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEAGWVP-AVGERVDAPWGTGEKRFPAVVVAVEKGGEIVTLKYYGYAETEVKPTSDVRLLTPPGGSATLPPGVATVGWKGEAVWVGDGQWYEAQVLGLVEHGYRIKFVKYGNEGEVPLEFLREKSSSSSGAYAGGGEAGNEGVPKRGREAKEV---KEFVIPDALRLLPTDSEEEKARKRRKVKHLKGLWKQRTRGGXXXEDEVEETRSWQAYLAK--SKRPKLGMGALKKGSIFKSPEAVDGKVGVMGSGAGMTDF--AKRAFK 361
            S+ ELQ  L T+  Q + ++ LL  DP+NE  L +  DL+  IKLT D++  ++                                                EA   P  +G  ++A         PAVV  +  G   + L   G+ +   + T D       GG   +   +  VG+  +A +  D  +Y  ++  L EHG  I F  YGN  EVP  +L                      PK    A++V   K   IP  L +LPTDSE EK RKRR++K +K L +Q+T       +   +   W  +  K   KR    M ++KK SIF SP  VDG+VGV+GS   MT F   ++ FK
Sbjct:    9 SVAELQERLVTFNGQLETIELLLKSDPANEELLGIAGDLKEVIKLTSDMLAHKQPQ----------------------------------------------EAALSPFPIGSIIEAE--VNSVWCPAVVEDI--GSTDIGLHLMGFNQKH-RATPDTLRAIDSGGRPPVDSALVEVGFACQAKYYADTIYYTGKIKSLTEHGCIITFDGYGNSEEVPFAYLTPLPE-----------------PKTETPAEKVDDNKLIPIPAHLAILPTDSEAEKERKRRRIKAIKSLNRQKT----IEAERNSKKNDWTKFTQKQGKKRVVGAMSSIKKTSIFASPATVDGRVGVVGSDQKMTHFEDTRKKFK 302          
BLAST of NO30G00490 vs. NCBI_GenBank
Match: CEO94987.1 (hypothetical protein PBRA_003800 [Plasmodiophora brassicae])

HSP 1 Score: 104.0 bits (258), Expect = 1.000e-18
Identity = 98/364 (26.92%), Postives = 165/364 (45.33%), Query Frame = 0
Query:    2 QSLEELQAALATYKTQTDQVQSLLDLDPSNEAYLTLKSDLQAAIKLTHDL--IRTQEDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEAGWVPAVGERVDAPWGTGEKRFPAVVVA-VEKGGEIVTLKY----YGYAETEVKPTSDVRLLTPPGGSATLPPGVATVGWKGEAVWVGDGQWYEAQVLGLVEHG-YRIKFVKYGNEGEVPLEFLREKSSSSSGAYAGGGEAGNEGVPKRGREAKEVKEFVIPDALRLLPTDSEEEKARKRRKVKHLKGLWKQRTRGGXXXEDEVEETR-SWQAYLAKSKRPKLGMGALKKGSIFKSPEAVDGKVGVMGSGAGMTDFAK 357
            QS+EEL A LA ++     V+ LL     ++  + L++DL   I LT +L  +RT+ +                                                  W  AVG+R  A W    + + A + + V+   +++ L Y     G +   ++P  +V L                VG K  A++  DG +Y A+V  + + G   + F  Y + G+V ++ ++  ++S   A +      +E VP++          VIPDAL++LP DSE +K  KR ++K +K      T      +D+ +  + SWQA+ + +    +  GALKK S+F+SP+ VDG+VGV+GSG GMT+++K
Sbjct:    4 QSVEELSAKLAEHRRNLQSVEQLLLTKAGDDTLIALRNDLLTVIDLTQNLLNVRTKHEQGGTPTAPRVL-------------------------------------RNW--AVGDRCLARWSEDNQWYSARITSIVDDKYDVIFLDYGNTEAGLSAKALRPEREVALTD------------LEVGMKLSAIYEQDGLFYNAEVQSIEDDGTITVFFTDYNHPGQVTVDHVKLSAASRKRAASEMTRGASEPVPEKP---------VIPDALKILPGDSEVQKKAKRARIKAIKS-----THRFKKMDDQTQTKKSSWQAFQSNA----IQKGALKKESMFRSPDTVDGRVGVVGSGQGMTEYSK 298          
BLAST of NO30G00490 vs. NCBI_GenBank
Match: OQS05099.1 (hypothetical protein THRCLA_02721 [Thraustotheca clavata])

HSP 1 Score: 103.2 bits (256), Expect = 1.800e-18
Identity = 95/362 (26.24%), Postives = 149/362 (41.16%), Query Frame = 0
Query:    3 SLEELQAALATYKTQTDQVQSLLDLDPSNEAYLTLKSDLQAAIKLTHDLIRTQEDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEAGWVPAVGERVDAPWGTGEKRFPAVVVAVEKGGEIVTLKYYGYAETEVKPTSDVRLLTPPGGSATLPPGVATVGWKGEAVWVGDGQWYEAQVLGLVEHGYRIKFVKYGNEGEVPLEFLREKSSSSSGAYAGGGEAGNEGVPKRGREAKEVKEFVIPDALRLLPTDSEEEKARKRRKVKHLKGLWKQRTRGGXXXEDEVEETRSWQAYLAK--SKRPKLGMGALKKGSIFKSPEAVDGKVGVMGSGAGMTDF--AKRAFK 361
            S+ ELQ  L T+K+Q + ++ LL  DP N+  + + +DL+  I+LT D++   +                                                 + W P V E +D                +   G  + +   G  +      +D+R +   GG   +   +  VG+  +A +  D ++Y  ++  + EHGY I F  YGN  EVPL +L   +           EA  E  P++  + K V    IP  L +LPTD+E E      ++K +K L +Q+T       +   +   W  +  K   KR    M +LKK SIF SP  VDG+VGV+GS   MT F   ++ FK
Sbjct:    9 SIAELQERLVTFKSQLETIEILLTSDPDNQELVGIANDLKEVIRLTTDMLAHNQPEETTQSPYPVGTSVEVNVL-----------------------------SSWCPGVVEAID----------------LGSDGNEIAVHLLGSNQKHQVKLTDIRNI-DAGGLPLVDASLIEVGFSCQAKYYVDSKYYSGKITSITEHGYIILFDGYGNSEEVPLAYLTPLA-----------EAKEEAKPEKADDNKLVP---IPPHLNILPTDTEAEXXXXXXRIKAIKSLNRQKT----IEVERNAKKNDWTKFTQKQGKKRVLGAMTSLKKTSIFASPATVDGRVGVIGSDQKMTQFEDTRKKFK 306          
BLAST of NO30G00490 vs. NCBI_GenBank
Match: XP_001009911.1 (nucleic acid-binding protein, putative [Tetrahymena thermophila SB210] >EAR89665.1 nucleic acid-binding protein, putative [Tetrahymena thermophila SB210])

HSP 1 Score: 100.9 bits (250), Expect = 8.800e-18
Identity = 73/247 (29.55%), Postives = 120/247 (48.58%), Query Frame = 0
Query:  125 KRFPAVVVAVEKGGEIVTLKYYGYAE--------TEVKPTSDVRLLTPPGGSATLPPGVATVGWKGEAVWVGDGQWYEAQVLGLVEHG-YRIKFVKYGNEGEVPLEFLREKSSSSSGAYAGGGEAGNEGVPKRGREAKEVKEFVIPDALRLLPTDSEEEKARKRRKVKHLKGLWKQRTRGGXXXEDEVEETRSWQAYLAKSKRPKLGMGALKKG--SIFKSPEAVDGKVGVMGSGAGMTDFAKRAFK 361
            K +  ++  V+   + V ++  GY++        T++KP  D  L  P              G+  EA++  DG++Y   +  + E G Y IKF KY N+ E+ +  LRE   +                 ++ R   ++ EF +PD L++LP D+E+ +  K++KVK LK  +KQ        + + E+   W  +   +   K G    KK   SIF+SPE ++GKVGV GSG GMT+F+ R ++
Sbjct:  131 KWYHGIITYVDNDEQKVIVQIIGYSDIVTVNSVYTKLKPKPDPELFQP--------------GFACEAIYPDDGKYYPCIIEKITEDGRYVIKFKKYNNKEELSIYLLRESRKTQQD-------------HRKKRTFDDLTEFKVPDNLKILPNDNEQVRQTKKKKVKALKQQFKQ----AQIEKHQSEKQNKWNDFKNNASSKKAGHFQSKKSQQSIFQSPETIEGKVGVTGSGKGMTNFSVRNYQ 346          
BLAST of NO30G00490 vs. NCBI_GenBank
Match: XP_004030050.1 (nucleic acid binding, putative [Ichthyophthirius multifiliis] >EGR28814.1 nucleic acid binding, putative [Ichthyophthirius multifiliis])

HSP 1 Score: 99.0 bits (245), Expect = 3.300e-17
Identity = 73/237 (30.80%), Postives = 120/237 (50.63%), Query Frame = 0
Query:  125 KRFPAVVVAVEKGGEIVTLKYYGYAETEVKPTSDVRLLTPPGGSATLPPGVATVGWKGEAVWVGDGQWYEAQVLGLVEHG-YRIKFVKYGNEGEVPLEFLREKSSSSSGAYAGGGEAGNEGVPKRGREAKEVKEFVIPDALRLLPTDSEEEKARKRRKVKHLKGLWKQRTRGGXXXEDEVEETRSWQAY--LAKSKRPKLGMGALKKGSIFKSPEAVDGKVGVMGSGAGMTDFAKRA 359
            K +  VV +V    +I+ ++  GY +     +  V+L   P       P +   G+  EA++  DG++Y   +  + E G Y +KF KY N+ E+ L  LRE                N+   ++ R   ++ EF +PD L+ LP +SE+ +  K++KVK LK  +KQ        +  +E+   W+ +   A+ K+ +   G   K SIF+SPE ++GKVGV  SG GMT+F+ R+
Sbjct:  126 KWYHGVVTSVNSDDQIINVQIIGYRDNIQIDSVYVKLKPKP------DPELFQPGFACEAIYSDDGKYYPCIIEKITEDGRYVVKFKKYNNKEELSLYMLRESRK-------------NQQDHRKKRTFDDLTEFKVPDNLKYLPNESEQTRLMKKKKVKALKQQFKQ----AQLEKSSMEKQEKWKDFKSTAQMKKKEHFSGRTSK-SIFQSPETIEGKVGVTNSGKGMTNFSVRS 338          
BLAST of NO30G00490 vs. NCBI_GenBank
Match: XP_012842335.1 (PREDICTED: survival of motor neuron-related-splicing factor 30 [Erythranthe guttata] >EYU33296.1 hypothetical protein MIMGU_mgv1a010686mg [Erythranthe guttata])

HSP 1 Score: 96.7 bits (239), Expect = 1.700e-16
Identity = 96/362 (26.52%), Postives = 152/362 (41.99%), Query Frame = 0
Query:    3 SLEELQAALATYKTQTDQVQSLLDLDPSNEAYLTLKSDLQAAIKLTHDLIRTQEDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEAGWVPAVGERVDAPWGTGEKRFPAVVVAVEKGGEIVTLKYYGYAETEVKPTSDVRLLTPPGGSATLPPGVATVGWKGEAVWVGDGQWYEAQVLGLVEHGYRIKFVKYGNEGEVPLEFLREKSSSSSGAYAGGGE---AGNEGVPKRGREA--KEVKEFVIPDALRLLPTDSEEEKARKRRKVKHLKGLWKQRTRGGXXXEDEVEETRSWQAY-LAKSKRPKLG-MGALKKGSIFKSPEAVDGKVGVMGSGAGMTDFAKR 358
            S+EEL A L+TYK Q  QV+ LL+ DP N  +L ++ +L   I+LT +L+ T + +                                                          D+  G         +VA   G     L   G +  E + T+D     P             +G K +AVW  DG+WY+  +  L  +GY +++  +GN  EV  + +R    S+        +   A  E + ++  +A  KE + + +P  L++ P DSE+ KA KR+K+      +K + R       + +   +WQ +   K +  K+G     K+ SIFKSP+   GKVGV GSG G+T+F KR
Sbjct:   12 SIEELAANLSTYKQQLGQVRKLLNDDPKNSEFLDMQKELMEVIQLTEELLETAKHS----------------------------------------------------------DSSPG---------IVAGTNGESSQNLHLSGNSFQESRSTADDGDKFP-------------IGTKVQAVWSEDGEWYDGTIEELTPNGYYVRYDGWGNREEVDPDNVRPIQESNPDPLLEAEKIAVATKEALKRKIAQAASKESESWTVPQKLQIDPNDSEDVKAAKRKKLH----AFKSKMRMEAKEVTQNKRQNAWQQFQTTKGRAKKVGFFSGRKRESIFKSPDDPFGKVGVTGSGKGLTEFQKR 289          
BLAST of NO30G00490 vs. NCBI_GenBank
Match: XP_022155149.1 (survival of motor neuron-related-splicing factor 30 [Momordica charantia])

HSP 1 Score: 96.7 bits (239), Expect = 1.700e-16
Identity = 96/363 (26.45%), Postives = 149/363 (41.05%), Query Frame = 0
Query:    3 SLEELQAALATYKTQTDQVQSLLDLDPSNEAYLTLKSDLQAAIKLTHDLIRTQEDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEAGWVPAVGERVDAPWGTGEKRFPAVVVAVEKGGEIVTLKYYGYAET--EVKPTSDVRLLTPPGGSATLPPGVATVGWKGEAVWVGDGQWYEAQVLGLVEHGYRIKFVKYGNEGEVPLEFLREKSSSSSGAYAGG--GEAGNEGVPKRGREAKEV--KEFVIPDALRLLPTDSEEEKARKRRKVKHLKGLWKQRTRGGXXXEDEVEETRSWQAY-LAKSKRPKLG-MGALKKGSIFKSPEAVDGKVGVMGSGAGMTDFAKR 358
            S+EEL + L+TYK Q  QV+ LLD DPSN  Y+ ++ +L+  I LT +L+ T +                                                                 +G          VE G    ++ +    ET  E +  SD     P             +G K +AVW  DG+WY+A +     +G+ + +  +GN+ EV    +RE     +         EA  + + ++  +A  V  +   +P  LR+ P D E+ KA KR+K+      +K + R       + +   +WQ +  AK K  K+G     K+ SIFKSP+  +GKVGV GSG G+T+F KR
Sbjct:    8 SIEELASNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEVISLTEELLATAKQNEI-------------------------------------------------------------SGSN--------VETGDNSASISFLQSKETKMEAESLSDHHEKFP-------------IGSKVQAVWSEDGEWYDATIEAHTVNGFYVSYDSWGNKEEVDPANVREIQQEVNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPPKLRIEPDDPEDVKATKRKKIH----AFKSKMRIEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKR 284          
BLAST of NO30G00490 vs. NCBI_GenBank
Match: XP_006385091.1 (survival of motor neuron-related-splicing factor 30 [Populus trichocarpa] >ABK93570.1 unknown [Populus trichocarpa] >PNT42746.1 hypothetical protein POPTR_004G229200v3 [Populus trichocarpa])

HSP 1 Score: 95.9 bits (237), Expect = 2.800e-16
Identity = 98/359 (27.30%), Postives = 146/359 (40.67%), Query Frame = 0
Query:    3 SLEELQAALATYKTQTDQVQSLLDLDPSNEAYLTLKSDLQAAIKLTHDLIRTQEDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEAGWVPAVGERVDAPWGTGEKRFPAVVVAVEKGGEIVTLKYYGYAETEVKPTSDVRLLTPPGGSATLPPGVATVGWKGEAVWVGDGQWYEAQVLGLVEHGYRIKFVKYGNEGEVPLEFLREKSSSSSGAYAGGGEAGNEGVPKRGREAKEV--KEFVIPDALRLLPTDSEEEKARKRRKVKHLKGLWKQRTRGGXXXEDEVEETRSWQAY-LAKSKRPKLG-MGALKKGSIFKSPEAVDGKVGVMGSGAGMTDFAKR 358
            S+EEL + L+TYK Q  QV+ LL  DP N  Y+ ++ +L   I LT +L+ T +                                                         E   +  GTG    P                  GYAE +    +D     P             +G K +AVW  DG+WY+A V  L  +GY + F  +GN  EV  + +R    ++        EA  + + ++  +A  V  +   +P  LR+ P DSE+ KA KR+K+      +K + R       + +   +WQ +   K K  K+G     K+ SIFKSP+  +GKVGV GSG G+T+F KR
Sbjct:    7 SIEELASNLSTYKEQLHQVRQLLVDDPGNSEYVDMEKELIEVIALTEELLETAKQ-------------------------------------------------------NEISGSHLGTGASASP------------------GYAEPQ---EADQHEKFP-------------IGSKVQAVWSEDGEWYDATVEDLTPNGYYVTFDGWGNREEVDPDNVRPVEFNALLEAEKVAEATKQAIKRKIAQAASVDFQSRTLPAKLRIEPDDSEDVKAAKRKKIHS----FKSKMRFEQLEVAQNKRQNAWQQFQTTKGKTKKVGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKR 272          
BLAST of NO30G00490 vs. NCBI_GenBank
Match: GAQ84060.1 (survival of motor neuron-related-splicing factor 30 [Klebsormidium nitens])

HSP 1 Score: 94.4 bits (233), Expect = 8.200e-16
Identity = 64/193 (33.16%), Postives = 97/193 (50.26%), Query Frame = 0
Query:  172 PPGVATVGWKGEAVWVGDGQWYEAQVLGLVEHGYRIKFVKYGNEGEVPLEFLREKSSSSSGAYAGGGEAGNEGVPKRGREAKEVKE------FVIPDALRLLPTDSEEEKARKRRKVKHLKGLWKQRTRGGXXXEDEVEETRSWQAYLAKSKRPKLG-MGALKKGSIFKSPEAVDGKVGVMGSGAGMTDFAKR 358
            P G   +G K EA++  DG+WY+A +    + GY IK+  + ++ EV +E +R      +   A   +   E      R+  E  E        +P +LR+ P DSEE +A KR+K+      WK + R       + +   +WQ +     + K G     KK SIFKSP+ + GKVGV+GSG G+TDF+ R
Sbjct:   95 PEGRLPIGSKVEALYREDGEWYKATIEDFTDAGYLIKYDDFEDKEEVMVEQVRSAEGPGTNPLADAEKVAEEARLALKRKIAEAAEKDPDMPKDLPKSLRINPDDSEEVRATKRKKIHQ----WKSKQRFEKLEVTQNKRQNAWQQFQTSGSKKKAGFFTGKKKESIFKSPDDLSGKVGVVGSGKGLTDFSGR 283          
BLAST of NO30G00490 vs. NCBI_GenBank
Match: XP_020589670.1 (survival of motor neuron-related-splicing factor 30 [Phalaenopsis equestris])

HSP 1 Score: 94.4 bits (233), Expect = 8.200e-16
Identity = 95/362 (26.24%), Postives = 144/362 (39.78%), Query Frame = 0
Query:    3 SLEELQAALATYKTQTDQVQSLLDLDPSNEAYLTLKSDLQAAIKLTHDLIRTQEDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEAGWVPAVGERVDAPWGTGEKRFPAVVVAVEKGGEIVTLKYYGYAETEVKPTSDVRLLTPPGGSATLPPGVATVGWKGEAVWVGDGQWYEAQVLGLVEHGYRIKFVKYGNEGEVPLEFLREKSSSSSGAYAGG---GEAGNEGVPKRGREA--KEVKEFVIPDALRLLPTDSEEEKARKRRKVKHLKGLWKQRTRGGXXXEDEVEETRSWQAY-LAKSKRPKLG-MGALKKGSIFKSPEAVDGKVGVMGSGAGMTDFAKR 358
            S+EEL + L+TYK Q ++V+ LL  DP N  Y  ++ +L   I LT +L+ T +                                                       + E      GT + +   V        E  T +Y+ +A                            VG K +AVW  DG+WY+A +  L  HGY + +  +GN+ EV    +R        A        EA  + + ++  +A   + +   IP  LR+ P D E+ KA KR+K+      +K + R       + +   +WQ +  AK K  K+G     K+ SIFKSP+   GKVGV GSG G+T+F KR
Sbjct:    8 SIEELASNLSTYKEQLNEVKRLLADDPGNSEYADMEKELMEVIALTEELLVTTKQVEYSKSD---------------------------------------------TELDEYASTSMGTSKSKLGPV-----GRSEQSTEEYHNFA----------------------------VGTKVQAVWSEDGEWYDATIEALTPHGYFVSYDSWGNKEEVEPYNVRPIRGVEVNALLEAEMQAEATKQAIKRKIAQAAVMDFQRRSIPQKLRIEPNDPEDVKAAKRKKIH----AFKSKARVEQLEVVQNKRQNAWQQFQSAKGKTKKIGFFSGRKRESIFKSPDDPTGKVGVTGSGKGLTEFQKR 287          
The following BLAST results are available for this feature:
BLAST of NO30G00490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR94512.12.700e-1928.69hypothetical protein ACHHYP_01225 [Achlya hypogyna... [more]
CEO94987.11.000e-1826.92hypothetical protein PBRA_003800 [Plasmodiophora b... [more]
OQS05099.11.800e-1826.24hypothetical protein THRCLA_02721 [Thraustotheca c... [more]
XP_001009911.18.800e-1829.55nucleic acid-binding protein, putative [Tetrahymen... [more]
XP_004030050.13.300e-1730.80nucleic acid binding, putative [Ichthyophthirius m... [more]
XP_012842335.11.700e-1626.52PREDICTED: survival of motor neuron-related-splici... [more]
XP_022155149.11.700e-1626.45survival of motor neuron-related-splicing factor 3... [more]
XP_006385091.12.800e-1627.30survival of motor neuron-related-splicing factor 3... [more]
GAQ84060.18.200e-1633.16survival of motor neuron-related-splicing factor 3... [more]
XP_020589670.18.200e-1626.24survival of motor neuron-related-splicing factor 3... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR102ngnoR102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00490.2NO30G00490.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO30G00490.1NO30G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605931gene_9271Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00490.2NO30G00490.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO30G00490.1NO30G00490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00490 ID=NO30G00490|Name=NO30G00490|organism=Nannochloropsis oceanica|type=gene|length=2030bp
CGCCTCAGACTACGCCCCCATCCTTCATCGCTTTGTCGCCTCCTCCTCCT
AAACCTCGGCCCAGGCAACACATACTTATTCATCCCTGACCTCCATGATG
GTGTCATTCCAGAGAAAAAAATTGCCTGAAACTAGCATGCCATTGTCGTG
GTTTATTACCCCCCTTTTCCTCCTTTTCCCATCTACACCAGGTACAGGGA
TTCGACCACTCTTCTTGCTTAGTGCGTCCCCATGCAGAGCCTCGAGGAGC
TCCAGGCCGCCTTGGCCACGTACAAGACACAGACGGATCAGgtaagcatc
aagctagcacgagagtgtggtagtgcgaagggttgagacttctctctgtt
ttggttgatgatgcactgagggcactcgctcgcccgatggaaggaatgcg
tcatcatcgtggtcgtcccgtcggacaactgcttaagcttaggttgctac
ttctggcgtgacttatacggaattgtggtgtggatagatattcctaggca
caagaggtgtgtcggtgctggtatttagtgtgaacaagacgaagggggcc
tgcgagcgagttgtatactccttgtgcccccatccacaagctgttgtagt
agctgtatccctttttctaattgatctcttaggcactccaaaaagcatgg
gcaattgtgcagaatacttggcttcgtgacttgtaccttccgtctttatc
gtctagctctttgtatcgtcttcatcattctcctctcgtttgacatggga
cccccattcaaccgcaccatccaatctgacctcctctcattcccctcctc
gtcttccctccctccctttctctctcgttctttcgcagGTACAAAGCCTC
CTAGACCTAGACCCAAGCAATGAGGCTTACCTCACCCTCAAATCCGACCT
CCAAGCAGCCATCAAGCTCACCCATGACCTGATCCGAACTCAAGAAGACG
CCGCAGCAGCAGCTGCAGCAGCAGCAATAACGTCAGCAACAGCAACAGCA
ACAGCGACAGCAGCAACAGCACAAACGACAGCTGCAAGAGCAACGCCAGC
AGCAGCAGCAGTTATGGAGATGCAATTGAGGAAGGGTGGAGAGGCGGGAT
GGGTGCCCGCTGTCGGAGAGAGGGTGGATGCTCCCTGGGGCACGGGGGAG
AAGCGATTCCCGGCGGTGGTGGTGGCGGTGGAGAAGGGAGGGGAGATAGT
GACATTGAAGTATTATGGTTACGCTGAGACTGAGgtatgtggttgggagc
gaagagctgggtgcaggccttgcctaaatgttcacatgtgttctccttat
tctattgttctttaccgctcatctcctccctcactccctcactttctttg
cccttcctcttcagGTAAAACCCACGTCCGATGTTCGTCTCCTCACACCT
CCCGGAGGCTCTGCCACCTTGCCCCCTGGCGTGGCGACGGTGGGGTGGAA
GGGAGAAGCAGTGTGGGTGGGGGACGGGCAGTGGTACGAGGCGCAGGTGC
TGGGGCTGGTGGAGCACGGGTACAGGATCAAGTTTGTGAAGTATGGGAAT
GAGGGCGAGGTACCCTTGGAGTTCTTGAGAGAGAAGAGCAGCAGCAGCAG
TGGTGCCTATGCCGGAGGGGGGGAAGCAGGGAACGAAGGAGTGCCGAAGC
GCGGGAGGGAGGCGAAAGAGGTGAAGGAGTTTGTGATTCCCGACGCACTG
CGGTTGTTGCCCACAGACAGCGAGGAGGAGAAGGCGAGGAAGAGGAGGAA
AGTGAAGCACCTGAAGGGCCTGTGGAAGCAGCGGACACGTGGGGGAGGCG
GGGGCGAGGACGAGGTGGAGGAGACGCGGAGCTGGCAGGCGTACCTGGCC
AAGAGCAAGCGGCCCAAGCTGGGCATGGGGGCCTTGAAGAAGGGGTCGAT
TTTCAAGAGCCCGGAGGCGGTGGACGGGAAGGTGGGGGTCATGGGCTCAG
GCGCGGGGATGACGGACTTTGCCAAGCGAGCGTTCAAGCCGGGGAAGGGA
GGAGGGGCGGGGGGGGGGAGTAATCGGTGA
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protein sequence of NO30G00490.2

>NO30G00490.2-protein ID=NO30G00490.2-protein|Name=NO30G00490.2|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MEMQLRKGGEAGWVPAVGERVDAPWGTGEKRFPAVVVAVEKGGEIVTLKY
YGYAETEVKPTSDVRLLTPPGGSATLPPGVATVGWKGEAVWVGDGQWYEA
QVLGLVEHGYRIKFVKYGNEGEVPLEFLREKSSSSSGAYAGGGEAGNEGV
PKRGREAKEVKEFVIPDALRLLPTDSEEEKARKRRKVKHLKGLWKQRTRG
GGGGEDEVEETRSWQAYLAKSKRPKLGMGALKKGSIFKSPEAVDGKVGVM
GSGAGMTDFAKRAFKPGKGGGAGGGSNR*
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protein sequence of NO30G00490.1

>NO30G00490.1-protein ID=NO30G00490.1-protein|Name=NO30G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MQSLEELQAALATYKTQTDQVQSLLDLDPSNEAYLTLKSDLQAAIKLTHD
LIRTQEDAAAAAAAAAITSATATATATAATAQTTAARATPAAAAVMEMQL
RKGGEAGWVPAVGERVDAPWGTGEKRFPAVVVAVEKGGEIVTLKYYGYAE
TEVKPTSDVRLLTPPGGSATLPPGVATVGWKGEAVWVGDGQWYEAQVLGL
VEHGYRIKFVKYGNEGEVPLEFLREKSSSSSGAYAGGGEAGNEGVPKRGR
EAKEVKEFVIPDALRLLPTDSEEEKARKRRKVKHLKGLWKQRTRGGGGGE
DEVEETRSWQAYLAKSKRPKLGMGALKKGSIFKSPEAVDGKVGVMGSGAG
MTDFAKRAFKPGKGGGAGGGSNR*
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Synonyms
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