NO30G00490.2, NO30G00490.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00490.2
Unique NameNO30G00490.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1900
Alignment locationchr30:198088..200117 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:198088..200117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00490.2 vs.
Match: XP_009035555.1 (hypothetical protein AURANDRAFT_23922, partial [Aureococcus anophagefferens]; EGB09490.1 hypothetical protein AURANDRAFT_23922, partial [Aureococcus anophagefferens])

HSP 1 Score: 119.0 bits (297), Expect = 2.300e-23
Identity = 82/191 (42.93%), Postives = 111/191 (58.12%), Query Frame = 0 
Query:   76 LPPGVATVGWKGEAVWVGDGQWYEAQVLGLVEHGYRIKFVKYGNEGEVPLEFLREKSSSSSGAYAGGGEAGNEGVPKRGREAKEVKEFVIPDALRLLPTDSEEEKARKRRKVKHLKGLWKQRTRGGGGGEDEVE--ETRSWQAYLAKSKRPKL--GMGALKKGSIFKSPEAVDGKVGVMGSGAGMTDFAKR 263
            L P    VG++    + GDG++YE  V  + + GY+++F +YGN  E+PLE+LR K +       GG    NE      REA     + IPD LR+  TDSE+E+ RKRRKVK LK   KQR +      DEV   +  SW A+ +K  + K+   M   +KGSIF SP+ VDG+VGV GSGA MT+F +R
Sbjct:   90 LDPSQIDVGFECVGRYSGDGKYYEVVVEAITDFGYKVQFQEYGNSEELPLEYLRPKDAD------GGRLDANE----LYREAD--GSWRIPDHLRVSHTDSEQERLRKRRKVKALKQKDKQREK------DEVRDGQKNSWLAFQSKGAKRKVAGSMKGARKGSIFASPDTVDGRVGVTGSGAEMTEFGER 262
The following BLAST results are available for this feature:
BLAST of NO30G00490.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009035555.12.300e-2342.93hypothetical protein AURANDRAFT_23922, partial [Au... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00490NO30G00490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00490.2NO30G00490.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00490.2.cds1NO30G00490.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00490.2.cds2NO30G00490.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00490.2 ID=NO30G00490.2|Name=NO30G00490.2|organism=Nannochloropsis oceanica|type=mRNA|length=1900bp
CGCCTCAGACTACGCCCCCATCCTTCATCGCTTTGTCGCCTCCTCCTCCT
AAACCTCGGCCCAGGCAACACATACTTATTCATCCCTGACCTCCATGATG
GTGTCATTCCAGAGAAAAAAATTGCCTGAAACTAGCATGCCATTGTCGTG
GTTTATTACCCCCCTTTTCCTCCTTTTCCCATCTACACCAGGTACAGGGA
TTCGACCACTCTTCTTGCTTAGTGCGTCCCCATGCAGAGCCTCGAGGAGC
TCCAGGCCGCCTTGGCCACGTACAAGACACAGACGGATCAGGTAAGCATC
AAGCTAGCACGAGAGTGTGGTAGTGCGAAGGGTTGAGACTTCTCTCTGTT
TTGGTTGATGATGCACTGAGGGCACTCGCTCGCCCGATGGAAGGAATGCG
TCATCATCGTGGTCGTCCCGTCGGACAACTGCTTAAGCTTAGGTTGCTAC
TTCTGGCGTGACTTATACGGAATTGTGGTGTGGATAGATATTCCTAGGCA
CAAGAGGTGTGTCGGTGCTGGTATTTAGTGTGAACAAGACGAAGGGGGCC
TGCGAGCGAGTTGTATACTCCTTGTGCCCCCATCCACAAGCTGTTGTAGT
AGCTGTATCCCTTTTTCTAATTGATCTCTTAGGCACTCCAAAAAGCATGG
GCAATTGTGCAGAATACTTGGCTTCGTGACTTGTACCTTCCGTCTTTATC
GTCTAGCTCTTTGTATCGTCTTCATCATTCTCCTCTCGTTTGACATGGGA
CCCCCATTCAACCGCACCATCCAATCTGACCTCCTCTCATTCCCCTCCTC
GTCTTCCCTCCCTCCCTTTCTCTCTCGTTCTTTCGCAGGTACAAAGCCTC
CTAGACCTAGACCCAAGCAATGAGGCTTACCTCACCCTCAAATCCGACCT
CCAAGCAGCCATCAAGCTCACCCATGACCTGATCCGAACTCAAGAAGACG
CCGCAGCAGCAGCTGCAGCAGCAGCAATAACGTCAGCAACAGCAACAGCA
ACAGCGACAGCAGCAACAGCACAAACGACAGCTGCAAGAGCAACGCCAGC
AGCAGCAGCAGTTATGGAGATGCAATTGAGGAAGGGTGGAGAGGCGGGAT
GGGTGCCCGCTGTCGGAGAGAGGGTGGATGCTCCCTGGGGCACGGGGGAG
AAGCGATTCCCGGCGGTGGTGGTGGCGGTGGAGAAGGGAGGGGAGATAGT
GACATTGAAGTATTATGGTTACGCTGAGACTGAGGTAAAACCCACGTCCG
ATGTTCGTCTCCTCACACCTCCCGGAGGCTCTGCCACCTTGCCCCCTGGC
GTGGCGACGGTGGGGTGGAAGGGAGAAGCAGTGTGGGTGGGGGACGGGCA
GTGGTACGAGGCGCAGGTGCTGGGGCTGGTGGAGCACGGGTACAGGATCA
AGTTTGTGAAGTATGGGAATGAGGGCGAGGTACCCTTGGAGTTCTTGAGA
GAGAAGAGCAGCAGCAGCAGTGGTGCCTATGCCGGAGGGGGGGAAGCAGG
GAACGAAGGAGTGCCGAAGCGCGGGAGGGAGGCGAAAGAGGTGAAGGAGT
TTGTGATTCCCGACGCACTGCGGTTGTTGCCCACAGACAGCGAGGAGGAG
AAGGCGAGGAAGAGGAGGAAAGTGAAGCACCTGAAGGGCCTGTGGAAGCA
GCGGACACGTGGGGGAGGCGGGGGCGAGGACGAGGTGGAGGAGACGCGGA
GCTGGCAGGCGTACCTGGCCAAGAGCAAGCGGCCCAAGCTGGGCATGGGG
GCCTTGAAGAAGGGGTCGATTTTCAAGAGCCCGGAGGCGGTGGACGGGAA
GGTGGGGGTCATGGGCTCAGGCGCGGGGATGACGGACTTTGCCAAGCGAG
CGTTCAAGCCGGGGAAGGGAGGAGGGGCGGGGGGGGGGAGTAATCGGTGA
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protein sequence of NO30G00490.2

>NO30G00490.2-protein ID=NO30G00490.2-protein|Name=NO30G00490.2|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MEMQLRKGGEAGWVPAVGERVDAPWGTGEKRFPAVVVAVEKGGEIVTLKY
YGYAETEVKPTSDVRLLTPPGGSATLPPGVATVGWKGEAVWVGDGQWYEA
QVLGLVEHGYRIKFVKYGNEGEVPLEFLREKSSSSSGAYAGGGEAGNEGV
PKRGREAKEVKEFVIPDALRLLPTDSEEEKARKRRKVKHLKGLWKQRTRG
GGGGEDEVEETRSWQAYLAKSKRPKLGMGALKKGSIFKSPEAVDGKVGVM
GSGAGMTDFAKRAFKPGKGGGAGGGSNR*
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mRNA from alignment at chr30:198088..200117-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00490.2 ID=NO30G00490.2|Name=NO30G00490.2|organism=Nannochloropsis oceanica|type=mRNA|length=2030bp|location=Sequence derived from alignment at chr30:198088..200117- (Nannochloropsis oceanica)
CGCCTCAGACTACGCCCCCATCCTTCATCGCTTTGTCGCCTCCTCCTCCT
AAACCTCGGCCCAGGCAACACATACTTATTCATCCCTGACCTCCATGATG
GTGTCATTCCAGAGAAAAAAATTGCCTGAAACTAGCATGCCATTGTCGTG
GTTTATTACCCCCCTTTTCCTCCTTTTCCCATCTACACCAGGTACAGGGA
TTCGACCACTCTTCTTGCTTAGTGCGTCCCCATGCAGAGCCTCGAGGAGC
TCCAGGCCGCCTTGGCCACGTACAAGACACAGACGGATCAGGTAAGCATC
AAGCTAGCACGAGAGTGTGGTAGTGCGAAGGGTTGAGACTTCTCTCTGTT
TTGGTTGATGATGCACTGAGGGCACTCGCTCGCCCGATGGAAGGAATGCG
TCATCATCGTGGTCGTCCCGTCGGACAACTGCTTAAGCTTAGGTTGCTAC
TTCTGGCGTGACTTATACGGAATTGTGGTGTGGATAGATATTCCTAGGCA
CAAGAGGTGTGTCGGTGCTGGTATTTAGTGTGAACAAGACGAAGGGGGCC
TGCGAGCGAGTTGTATACTCCTTGTGCCCCCATCCACAAGCTGTTGTAGT
AGCTGTATCCCTTTTTCTAATTGATCTCTTAGGCACTCCAAAAAGCATGG
GCAATTGTGCAGAATACTTGGCTTCGTGACTTGTACCTTCCGTCTTTATC
GTCTAGCTCTTTGTATCGTCTTCATCATTCTCCTCTCGTTTGACATGGGA
CCCCCATTCAACCGCACCATCCAATCTGACCTCCTCTCATTCCCCTCCTC
GTCTTCCCTCCCTCCCTTTCTCTCTCGTTCTTTCGCAGGTACAAAGCCTC
CTAGACCTAGACCCAAGCAATGAGGCTTACCTCACCCTCAAATCCGACCT
CCAAGCAGCCATCAAGCTCACCCATGACCTGATCCGAACTCAAGAAGACG
CCGCAGCAGCAGCTGCAGCAGCAGCAATAACGTCAGCAACAGCAACAGCA
ACAGCGACAGCAGCAACAGCACAAACGACAGCTGCAAGAGCAACGCCAGC
AGCAGCAGCAGTTATGGAGATGCAATTGAGGAAGGGTGGAGAGGCGGGAT
GGGTGCCCGCTGTCGGAGAGAGGGTGGATGCTCCCTGGGGCACGGGGGAG
AAGCGATTCCCGGCGGTGGTGGTGGCGGTGGAGAAGGGAGGGGAGATAGT
GACATTGAAGTATTATGGTTACGCTGAGACTGAGGTATGTGGTTGGGAGC
GAAGAGCTGGGTGCAGGCCTTGCCTAAATGTTCACATGTGTTCTCCTTAT
TCTATTGTTCTTTACCGCTCATCTCCTCCCTCACTCCCTCACTTTCTTTG
CCCTTCCTCTTCAGGTAAAACCCACGTCCGATGTTCGTCTCCTCACACCT
CCCGGAGGCTCTGCCACCTTGCCCCCTGGCGTGGCGACGGTGGGGTGGAA
GGGAGAAGCAGTGTGGGTGGGGGACGGGCAGTGGTACGAGGCGCAGGTGC
TGGGGCTGGTGGAGCACGGGTACAGGATCAAGTTTGTGAAGTATGGGAAT
GAGGGCGAGGTACCCTTGGAGTTCTTGAGAGAGAAGAGCAGCAGCAGCAG
TGGTGCCTATGCCGGAGGGGGGGAAGCAGGGAACGAAGGAGTGCCGAAGC
GCGGGAGGGAGGCGAAAGAGGTGAAGGAGTTTGTGATTCCCGACGCACTG
CGGTTGTTGCCCACAGACAGCGAGGAGGAGAAGGCGAGGAAGAGGAGGAA
AGTGAAGCACCTGAAGGGCCTGTGGAAGCAGCGGACACGTGGGGGAGGCG
GGGGCGAGGACGAGGTGGAGGAGACGCGGAGCTGGCAGGCGTACCTGGCC
AAGAGCAAGCGGCCCAAGCTGGGCATGGGGGCCTTGAAGAAGGGGTCGAT
TTTCAAGAGCCCGGAGGCGGTGGACGGGAAGGTGGGGGTCATGGGCTCAG
GCGCGGGGATGACGGACTTTGCCAAGCGAGCGTTCAAGCCGGGGAAGGGA
GGAGGGGCGGGGGGGGGGAGTAATCGGTGA
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Coding sequence (CDS) from alignment at chr30:198088..200117-

>NO30G00490.2 ID=NO30G00490.2|Name=NO30G00490.2|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr30:198088..200117- (Nannochloropsis oceanica)
ATGGAGATGCAATTGAGGAAGGGTGGAGAGGCGGGATGGGTGCCCGCTGT
CGGAGAGAGGGTGGATGCTCCCTGGGGCACGGGGGAGAAGCGATTCCCGG
CGGTGGTGGTGGCGGTGGAGAAGGGAGGGGAGATAGTGACATTGAAGTAT
TATGGTTACGCTGAGACTGAGGTAAAACCCACGTCCGATGTTCGTCTCCT
CACACCTCCCGGAGGCTCTGCCACCTTGCCCCCTGGCGTGGCGACGGTGG
GGTGGAAGGGAGAAGCAGTGTGGGTGGGGGACGGGCAGTGGTACGAGGCG
CAGGTGCTGGGGCTGGTGGAGCACGGGTACAGGATCAAGTTTGTGAAGTA
TGGGAATGAGGGCGAGGTACCCTTGGAGTTCTTGAGAGAGAAGAGCAGCA
GCAGCAGTGGTGCCTATGCCGGAGGGGGGGAAGCAGGGAACGAAGGAGTG
CCGAAGCGCGGGAGGGAGGCGAAAGAGGTGAAGGAGTTTGTGATTCCCGA
CGCACTGCGGTTGTTGCCCACAGACAGCGAGGAGGAGAAGGCGAGGAAGA
GGAGGAAAGTGAAGCACCTGAAGGGCCTGTGGAAGCAGCGGACACGTGGG
GGAGGCGGGGGCGAGGACGAGGTGGAGGAGACGCGGAGCTGGCAGGCGTA
CCTGGCCAAGAGCAAGCGGCCCAAGCTGGGCATGGGGGCCTTGAAGAAGG
GGTCGATTTTCAAGAGCCCGGAGGCGGTGGACGGGAAGGTGGGGGTCATG
GGCTCAGGCGCGGGGATGACGGACTTTGCCAAGCGAGCGTTCAAGCCGGG
GAAGGGAGGAGGGGCGGGGGGGGGGAGTAATCGGTGA
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Synonyms
Publications