NO30G00210, NO30G00210 (gene) Nannochloropsis oceanica

Overview
NameNO30G00210
Unique NameNO30G00210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1657
Alignment locationchr30:90174..91830 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:90174..91830 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf
IPR013656PAS_4
IPR000014PAS
Homology
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BLAST of NO30G00210 vs. NCBI_GenBank
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 89.7 bits (221), Expect = 2.300e-14
Identity = 56/143 (39.16%), Postives = 80/143 (55.94%), Query Frame = 0 
Query:  237 PSAEKQ--RRASKEDLSGLTAEEKVERRKIRARMYNRLSRHRRNQLHGELRSDVSRMLIYKNIIEDAPDMICVISPDIQSQVLYINKAARGVLVTGPAQLVGSSFWDIVHTEDKMALFRALTTVTFFKSAGKVERLCCLVVTN 378
            PSA +   +RA + DLSG T  EK ERRK RARMY+   R R+N     LR  V  + +YK ++++AP++  V+S D Q++VLY N A     +  P   VG S W++VH EDK  +  A  +    K   +V R  C + T+
Sbjct:  270 PSARRSEGKRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEKE--EVGRARCRLGTS 410
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BLAST of NO30G00210 vs. NCBI_GenBank
Match: EWM23655.1 (pas pac sensor hybrid histidine kinase [Nannochloropsis gaditana])

HSP 1 Score: 85.1 bits (209), Expect = 5.600e-13
Identity = 56/189 (29.63%), Postives = 99/189 (52.38%), Query Frame = 0 
Query:  241 KQRRASKEDLSGLTAEEKVERRKIRARMYNRLSRHRRNQLHGELRSDVSRMLIYKNIIEDAPDMICVISPDIQSQVLYINKAAR---GVLVTGPAQ--LVGSSFWDIVHTEDKMALFRALTTVTFFKSAGKVERLCCLV----------VTNNPGVYMSVRMTLANGMQGIVCVMCNEDHLSTISRVLP 415
            K+RRA + D S LT EE+++ +K RAR Y+ ++R R+++    LR++V R+ +YK ++E APD + ++S D Q ++L+ NK +    G +  G A+  L G   W+ +   D++A+F A+  V   K    V  + C V              P   + V +TL +  QG++ ++    +    S  +P
Sbjct:  324 KKRRAPRMDFSKLTPEEQIQWKKARARKYSAMARERQSKKEEALRAEVGRLQVYKTLVEAAPDAMLLLSNDAQGRILFANKESEKLFGFIPKGGAEKPLPGRCLWEWLDVTDRVAIFAAIGKVVLCKHL--VRAVPCTVWLPSGSVPKHDARGPQQSLKVLITLRSSAQGLILIIRPHQYTDRDSASMP 510
The following BLAST results are available for this feature:
BLAST of NO30G00210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23721.12.300e-1439.16conserved unknown protein [Nannochloropsis gaditan... [more]
EWM23655.15.600e-1329.63pas pac sensor hybrid histidine kinase [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR074ncniR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00210.1NO30G00210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|662350gene_10478Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00210.1NO30G00210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00210 ID=NO30G00210|Name=NO30G00210|organism=Nannochloropsis oceanica|type=gene|length=1657bp
GCCCGCCTGTATACACAAAACAGAGTTCACCCGATCTTCTACCGGTCCAA
TGGCTTTCACTACACGCCACACTCCTCTCATGGACTTTGGTCCCACGACA
GATCAAGGGCAGAATCAGAATCAACGCGGCTGTCTGAATAAAATGAAACA
GCAGCACAACAGTTTGTTGTCAATTCTCTTAGACGATAAAGAGGCACACG
GTGGCGCTGTGGCCCTGTGCTGCCTGACAACACGCTTCGCCGGTGCTGAC
AAACTTCCCGACTCCCCGCCGACAAACTCCTCGTCTTGGGCCTCTTCTCT
CTTAGCGGCGAGTCGCGgtacgttgcttgaagtgaatcggtgcccaggac
tccgtacctacacttctatgcctctatgtacacatttccccgatttgctt
caactattatcccacgcctcatacgctcccatgtaatataggcatacatg
cacacaaagcgcacagaatcgtctacatgcgcaccacttacgtgtagcaa
atctattcacaaacacgtgcactcactcacatttatacctttttccccct
acatgcagCCTTAGATCTTCAAAAGCAGGCGGTCCACAAATCATTGGAAT
CCTTTCTGACCCAGTACCAGCAACAGCTCCTCCCGTTCCCCATCCACCAG
CACCCTATCCTCAAGTATAAGATAAGAAATTTACTCTCCGAGGCCTCGCC
TTCCTTTCAAGCACAGCAGCAGCAGAACCAGCACCAGCAGCATCTCAAAA
GAAGCCATCCACCACTGCAGCTTCACTATCCTCCGAAATGCCAAATACAA
CCGCCACTTAAGAAGCAGTATGTGATGACGTCAACCAAGTGCTTTTTAGT
AAACGAGCTCGTGGAGGCTAAGCGCTACCCACCGATTGCACCGCTGAGTG
AGGCCTCTTTGTCTCTGCAAGAGATTCGAACTGGTGTCATGGGTGTTTCG
GTGGGATTGCTGCCTGGCAGATGCTCCGAGATCATGAGAAAGTACATTCC
Ggtaagagacatgagagagatacgctttgcgtttgcatgtctgataaaac
ctcatgtggcaactcattctttcttttcgttctcgttcttcccgtttaat
agAGCGCTGAAAAGCAGCGAAGAGCGTCGAAAGAGGACTTGTCGGGTCTA
ACTGCGGAGGAGAAGGTAGAGCGACGCAAGATACGTGCTCGCATGTACAA
TCGCTTGTCTCGCCACCGCCGCAATCAGTTGCATGGTGAGCTGCGCAGCG
ATGTGAGTCGCATGCTGATCTACAAGAATATTATTGAAGATGCACCGGAC
ATGATATGTGTCATCTCCCCCGACATTCAGAGCCAGGTGCTGTACATCAA
TAAGGCCGCTCGAGGCGTCCTTGTCACTGGGCCCGCGCAGCTGGTGGGGT
CAAGCTTCTGGGACATCGTCCACACAGAAGATAAGATGGCGCTGTTCAGG
GCTCTCACTACCGTCACTTTCTTCAAGTCGGCCGGAAAAGTAGAAAGGCT
ATGCTGTCTTGTCGTCACGAACAACCCCGGTGTATATATGTCTGTCCGGA
TGACGCTAGCAAATGGGATGCAGGGTATTGTCTGCGTAATGTGCAATGAA
GATCATCTGTCTACCATTTCGCGCGTGTTGCCTGATAGAAGGCCCTCTGT
TATGTAG
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protein sequence of NO30G00210.1

>NO30G00210.1-protein ID=NO30G00210.1-protein|Name=NO30G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MAFTTRHTPLMDFGPTTDQGQNQNQRGCLNKMKQQHNSLLSILLDDKEAH
GGAVALCCLTTRFAGADKLPDSPPTNSSSWASSLLAASRALDLQKQAVHK
SLESFLTQYQQQLLPFPIHQHPILKYKIRNLLSEASPSFQAQQQQNQHQQ
HLKRSHPPLQLHYPPKCQIQPPLKKQYVMTSTKCFLVNELVEAKRYPPIA
PLSEASLSLQEIRTGVMGVSVGLLPGRCSEIMRKYIPSAEKQRRASKEDL
SGLTAEEKVERRKIRARMYNRLSRHRRNQLHGELRSDVSRMLIYKNIIED
APDMICVISPDIQSQVLYINKAARGVLVTGPAQLVGSSFWDIVHTEDKMA
LFRALTTVTFFKSAGKVERLCCLVVTNNPGVYMSVRMTLANGMQGIVCVM
CNEDHLSTISRVLPDRRPSVM*
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Synonyms
Publications