NO30G00210.1, NO30G00210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00210.1
Unique NameNO30G00210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1315
Alignment locationchr30:90174..91830 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:90174..91830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00210.1 vs.
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 92.0 bits (227), Expect = 4.600e-15
Identity = 64/189 (33.86%), Postives = 93/189 (49.21%), Query Frame = 0 
Query:  237 PSAEKQ--RRASKEDLSGLTAEEKVERRKIRARMYNRLSRHRRNQLHGELRSDVSRMLIYKNIIEDAPDMICVISPDIQSQVLYINKAARGVLVTGPAQLVGSSFWDIVHTEDKMALFRALTTVTF-------------------FKSAGKVERLCCLVVTNNPGVYMSVRMTLANGMQGIVCVMCNED 405
            PSA +   +RA + DLSG T  EK ERRK RARMY+   R R+N     LR  V  + +YK ++++AP++  V+S D Q++VLY N A     +  P   VG S W++VH EDK  +  A  +                       K AG   R   + V+  P     V +++  G QG++ V+  ED
Sbjct:  270 PSARRSEGKRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEKEEVGRARCRLGTSKGQGSKEAGGAGREVPVAVSEVP-----VAVSVRRGTQGLILVIRRED 453
The following BLAST results are available for this feature:
BLAST of NO30G00210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23721.14.600e-1533.86conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00210NO30G00210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00210.1NO30G00210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00210.1.cds1NO30G00210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00210.1.cds2NO30G00210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00210.1.cds3NO30G00210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00210.1 ID=NO30G00210.1|Name=NO30G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1315bp
GCCCGCCTGTATACACAAAACAGAGTTCACCCGATCTTCTACCGGTCCAA
TGGCTTTCACTACACGCCACACTCCTCTCATGGACTTTGGTCCCACGACA
GATCAAGGGCAGAATCAGAATCAACGCGGCTGTCTGAATAAAATGAAACA
GCAGCACAACAGTTTGTTGTCAATTCTCTTAGACGATAAAGAGGCACACG
GTGGCGCTGTGGCCCTGTGCTGCCTGACAACACGCTTCGCCGGTGCTGAC
AAACTTCCCGACTCCCCGCCGACAAACTCCTCGTCTTGGGCCTCTTCTCT
CTTAGCGGCGAGTCGCGCCTTAGATCTTCAAAAGCAGGCGGTCCACAAAT
CATTGGAATCCTTTCTGACCCAGTACCAGCAACAGCTCCTCCCGTTCCCC
ATCCACCAGCACCCTATCCTCAAGTATAAGATAAGAAATTTACTCTCCGA
GGCCTCGCCTTCCTTTCAAGCACAGCAGCAGCAGAACCAGCACCAGCAGC
ATCTCAAAAGAAGCCATCCACCACTGCAGCTTCACTATCCTCCGAAATGC
CAAATACAACCGCCACTTAAGAAGCAGTATGTGATGACGTCAACCAAGTG
CTTTTTAGTAAACGAGCTCGTGGAGGCTAAGCGCTACCCACCGATTGCAC
CGCTGAGTGAGGCCTCTTTGTCTCTGCAAGAGATTCGAACTGGTGTCATG
GGTGTTTCGGTGGGATTGCTGCCTGGCAGATGCTCCGAGATCATGAGAAA
GTACATTCCGAGCGCTGAAAAGCAGCGAAGAGCGTCGAAAGAGGACTTGT
CGGGTCTAACTGCGGAGGAGAAGGTAGAGCGACGCAAGATACGTGCTCGC
ATGTACAATCGCTTGTCTCGCCACCGCCGCAATCAGTTGCATGGTGAGCT
GCGCAGCGATGTGAGTCGCATGCTGATCTACAAGAATATTATTGAAGATG
CACCGGACATGATATGTGTCATCTCCCCCGACATTCAGAGCCAGGTGCTG
TACATCAATAAGGCCGCTCGAGGCGTCCTTGTCACTGGGCCCGCGCAGCT
GGTGGGGTCAAGCTTCTGGGACATCGTCCACACAGAAGATAAGATGGCGC
TGTTCAGGGCTCTCACTACCGTCACTTTCTTCAAGTCGGCCGGAAAAGTA
GAAAGGCTATGCTGTCTTGTCGTCACGAACAACCCCGGTGTATATATGTC
TGTCCGGATGACGCTAGCAAATGGGATGCAGGGTATTGTCTGCGTAATGT
GCAATGAAGATCATCTGTCTACCATTTCGCGCGTGTTGCCTGATAGAAGG
CCCTCTGTTATGTAG
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protein sequence of NO30G00210.1

>NO30G00210.1-protein ID=NO30G00210.1-protein|Name=NO30G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MAFTTRHTPLMDFGPTTDQGQNQNQRGCLNKMKQQHNSLLSILLDDKEAH
GGAVALCCLTTRFAGADKLPDSPPTNSSSWASSLLAASRALDLQKQAVHK
SLESFLTQYQQQLLPFPIHQHPILKYKIRNLLSEASPSFQAQQQQNQHQQ
HLKRSHPPLQLHYPPKCQIQPPLKKQYVMTSTKCFLVNELVEAKRYPPIA
PLSEASLSLQEIRTGVMGVSVGLLPGRCSEIMRKYIPSAEKQRRASKEDL
SGLTAEEKVERRKIRARMYNRLSRHRRNQLHGELRSDVSRMLIYKNIIED
APDMICVISPDIQSQVLYINKAARGVLVTGPAQLVGSSFWDIVHTEDKMA
LFRALTTVTFFKSAGKVERLCCLVVTNNPGVYMSVRMTLANGMQGIVCVM
CNEDHLSTISRVLPDRRPSVM*
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mRNA from alignment at chr30:90174..91830-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00210.1 ID=NO30G00210.1|Name=NO30G00210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1657bp|location=Sequence derived from alignment at chr30:90174..91830- (Nannochloropsis oceanica)
GCCCGCCTGTATACACAAAACAGAGTTCACCCGATCTTCTACCGGTCCAA
TGGCTTTCACTACACGCCACACTCCTCTCATGGACTTTGGTCCCACGACA
GATCAAGGGCAGAATCAGAATCAACGCGGCTGTCTGAATAAAATGAAACA
GCAGCACAACAGTTTGTTGTCAATTCTCTTAGACGATAAAGAGGCACACG
GTGGCGCTGTGGCCCTGTGCTGCCTGACAACACGCTTCGCCGGTGCTGAC
AAACTTCCCGACTCCCCGCCGACAAACTCCTCGTCTTGGGCCTCTTCTCT
CTTAGCGGCGAGTCGCGGTACGTTGCTTGAAGTGAATCGGTGCCCAGGAC
TCCGTACCTACACTTCTATGCCTCTATGTACACATTTCCCCGATTTGCTT
CAACTATTATCCCACGCCTCATACGCTCCCATGTAATATAGGCATACATG
CACACAAAGCGCACAGAATCGTCTACATGCGCACCACTTACGTGTAGCAA
ATCTATTCACAAACACGTGCACTCACTCACATTTATACCTTTTTCCCCCT
ACATGCAGCCTTAGATCTTCAAAAGCAGGCGGTCCACAAATCATTGGAAT
CCTTTCTGACCCAGTACCAGCAACAGCTCCTCCCGTTCCCCATCCACCAG
CACCCTATCCTCAAGTATAAGATAAGAAATTTACTCTCCGAGGCCTCGCC
TTCCTTTCAAGCACAGCAGCAGCAGAACCAGCACCAGCAGCATCTCAAAA
GAAGCCATCCACCACTGCAGCTTCACTATCCTCCGAAATGCCAAATACAA
CCGCCACTTAAGAAGCAGTATGTGATGACGTCAACCAAGTGCTTTTTAGT
AAACGAGCTCGTGGAGGCTAAGCGCTACCCACCGATTGCACCGCTGAGTG
AGGCCTCTTTGTCTCTGCAAGAGATTCGAACTGGTGTCATGGGTGTTTCG
GTGGGATTGCTGCCTGGCAGATGCTCCGAGATCATGAGAAAGTACATTCC
GGTAAGAGACATGAGAGAGATACGCTTTGCGTTTGCATGTCTGATAAAAC
CTCATGTGGCAACTCATTCTTTCTTTTCGTTCTCGTTCTTCCCGTTTAAT
AGAGCGCTGAAAAGCAGCGAAGAGCGTCGAAAGAGGACTTGTCGGGTCTA
ACTGCGGAGGAGAAGGTAGAGCGACGCAAGATACGTGCTCGCATGTACAA
TCGCTTGTCTCGCCACCGCCGCAATCAGTTGCATGGTGAGCTGCGCAGCG
ATGTGAGTCGCATGCTGATCTACAAGAATATTATTGAAGATGCACCGGAC
ATGATATGTGTCATCTCCCCCGACATTCAGAGCCAGGTGCTGTACATCAA
TAAGGCCGCTCGAGGCGTCCTTGTCACTGGGCCCGCGCAGCTGGTGGGGT
CAAGCTTCTGGGACATCGTCCACACAGAAGATAAGATGGCGCTGTTCAGG
GCTCTCACTACCGTCACTTTCTTCAAGTCGGCCGGAAAAGTAGAAAGGCT
ATGCTGTCTTGTCGTCACGAACAACCCCGGTGTATATATGTCTGTCCGGA
TGACGCTAGCAAATGGGATGCAGGGTATTGTCTGCGTAATGTGCAATGAA
GATCATCTGTCTACCATTTCGCGCGTGTTGCCTGATAGAAGGCCCTCTGT
TATGTAG
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Coding sequence (CDS) from alignment at chr30:90174..91830-

>NO30G00210.1 ID=NO30G00210.1|Name=NO30G00210.1|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr30:90174..91830- (Nannochloropsis oceanica)
ATGGCTTTCACTACACGCCACACTCCTCTCATGGACTTTGGTCCCACGAC
AGATCAAGGGCAGAATCAGAATCAACGCGGCTGTCTGAATAAAATGAAAC
AGCAGCACAACAGTTTGTTGTCAATTCTCTTAGACGATAAAGAGGCACAC
GGTGGCGCTGTGGCCCTGTGCTGCCTGACAACACGCTTCGCCGGTGCTGA
CAAACTTCCCGACTCCCCGCCGACAAACTCCTCGTCTTGGGCCTCTTCTC
TCTTAGCGGCGAGTCGCGCCTTAGATCTTCAAAAGCAGGCGGTCCACAAA
TCATTGGAATCCTTTCTGACCCAGTACCAGCAACAGCTCCTCCCGTTCCC
CATCCACCAGCACCCTATCCTCAAGTATAAGATAAGAAATTTACTCTCCG
AGGCCTCGCCTTCCTTTCAAGCACAGCAGCAGCAGAACCAGCACCAGCAG
CATCTCAAAAGAAGCCATCCACCACTGCAGCTTCACTATCCTCCGAAATG
CCAAATACAACCGCCACTTAAGAAGCAGTATGTGATGACGTCAACCAAGT
GCTTTTTAGTAAACGAGCTCGTGGAGGCTAAGCGCTACCCACCGATTGCA
CCGCTGAGTGAGGCCTCTTTGTCTCTGCAAGAGATTCGAACTGGTGTCAT
GGGTGTTTCGGTGGGATTGCTGCCTGGCAGATGCTCCGAGATCATGAGAA
AGTACATTCCGAGCGCTGAAAAGCAGCGAAGAGCGTCGAAAGAGGACTTG
TCGGGTCTAACTGCGGAGGAGAAGGTAGAGCGACGCAAGATACGTGCTCG
CATGTACAATCGCTTGTCTCGCCACCGCCGCAATCAGTTGCATGGTGAGC
TGCGCAGCGATGTGAGTCGCATGCTGATCTACAAGAATATTATTGAAGAT
GCACCGGACATGATATGTGTCATCTCCCCCGACATTCAGAGCCAGGTGCT
GTACATCAATAAGGCCGCTCGAGGCGTCCTTGTCACTGGGCCCGCGCAGC
TGGTGGGGTCAAGCTTCTGGGACATCGTCCACACAGAAGATAAGATGGCG
CTGTTCAGGGCTCTCACTACCGTCACTTTCTTCAAGTCGGCCGGAAAAGT
AGAAAGGCTATGCTGTCTTGTCGTCACGAACAACCCCGGTGTATATATGT
CTGTCCGGATGACGCTAGCAAATGGGATGCAGGGTATTGTCTGCGTAATG
TGCAATGAAGATCATCTGTCTACCATTTCGCGCGTGTTGCCTGATAGAAG
GCCCTCTGTTATGTAG
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Synonyms
Publications