NO30G00200, NO30G00200 (gene) Nannochloropsis oceanica

Overview
NameNO30G00200
Unique NameNO30G00200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2859
Alignment locationchr30:86150..89008 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:86150..89008 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO30G00200 vs. NCBI_GenBank
Match: EWM20240.1 (hypothetical protein Naga_100380g2 [Nannochloropsis gaditana])

HSP 1 Score: 126.3 bits (316), Expect = 3.100e-25
Identity = 79/270 (29.26%), Postives = 134/270 (49.63%), Query Frame = 0 
Query:  297 TNMEYLILVRLLNYRIDHEGRWYKDFLPKAQDSGILRSASALFLNATDEGTILRVHDGCYEKSPTRFLGTEDPKLLAMID-----GTIRIIWTSWEYAKTAGEGSRLAMGILDIDSLTIHLDHVFPSPFDHFNEKNWVAFQRPGCNELYFIYEWHP-LRIGALDKLSGTINFNMVISTPRSFRHLRGSSNGVVYKNDIWLLTHGTSWYRGPGPTYYHRIVVLDSETFEVKRCTYPFKLESTEAPIEFSLGLDIDRLGNVTIAYSVFDGSA 561
            T ++  +L+R +NY    +G ++     + +   ++  +         E    R+ +  +        G ED +  +  D       I  +  S EY+++A   ++L +G+++ D+ T+ +  +   PF    EKNWV     G   L  +YEW+P +RIG +D+  G    +  I +P SF ++RGS+NG++++N+ W +TH      G    Y HRIV+L+ E  +V R + PF   S E  IE+ LGL  D  G +T  YSV D S+
Sbjct:  268 TFLDSHVLLREVNYFAAEDGSYHVSQDSQVKTRVLVDGSDQYIKIQESEDFRKRITERGWHHPEAYVQGLEDTRFKSTFDYKANSSVIYTLSASMEYSRSANHMNQL-LGVIEPDTWTLTIQDIIRGPFGDRTEKNWVFVN--GIESL--VYEWYPFIRIGHIDRDKGEFVIDRSIQSPLSFLNMRGSTNGILHRNEWWFVTHMVKHRSGRRRIYTHRIVILNFEMSQVLRYSLPFTFNS-ETDIEYCLGLKADNEG-LTFGYSVRDKSS 530
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BLAST of NO30G00200 vs. NCBI_GenBank
Match: YP_009174077.1 (putative glycosyl transferase [Yellowstone lake mimivirus] >BAT21964.1 putative glycosyl transferase [Yellowstone lake mimivirus])

HSP 1 Score: 98.6 bits (244), Expect = 6.800e-17
Identity = 85/290 (29.31%), Postives = 137/290 (47.24%), Query Frame = 0 
Query:  287 SSNRLIPKQDTNMEYLILVRLLNYRIDHEGRWYKDFLPKAQDSGILRSASALFLNATDEGTILRVHDGCYEKSPTRFLGTEDPKLLA-----MIDGT--------IRIIWTSWEYAKTAGEGSRLAMGILDIDSLTIHLDHVFPSPFDHFN-EKNWVAFQRPGCNELYFIYEWHPLRIGALDKLSGTINFNMVISTPRSFRHLRGSSNGVVYKNDIWLLTHGTSWYRGPGPTYYHRIVVLDSETFEVKRCTYPFKLESTEAPIEFSLGLDIDRLGNVTIAYSVFDGSAVL 563
            SS+  I K D   +Y++ VR++NY ID+ G ++        +  I+     + L++  + TI++      +    R++G ED ++       ++D          I  I T +      G    +  G  D+DS  I   +   + F   N EKNWV  +    NE + IY+WHPL++  LDK    I     I  P  F   RGS+ G  Y+++IW + H  S Y  P   YYH +VVLD+   ++KR + PFK +     IE+ +GL ++    V + YS +D +  L
Sbjct:  388 SSSSSIIKVDN--QYVMNVRMVNYLIDNNGNYHD------CEKHIITINKYVVLDS--DFTIVKEQQFNQDYVDRRYIGIEDLRIFQNSLDNVLDNNGLDNEKREINYIGTGYHQNNKIG----IVYGKYDLDSEEITDINEINTAFTTSNCEKNWVFTEYN--NETHIIYKWHPLQLCKLDKKDNLIRLVKEIEMPAFFSLSRGSTCGSKYEDEIWFVVHIVS-YEEP-RHYYHCLVVLDN-NMKLKRYSAPFKFKG--ETIEYCIGLLVEE-DRVIMTYSCWDRTTQL 655
[Close]
BLAST of NO30G00200 vs. NCBI_GenBank
Match: EWM20170.1 (hypothetical protein Naga_101281g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 95.5 bits (236), Expect = 5.800e-16
Identity = 54/143 (37.76%), Postives = 80/143 (55.94%), Query Frame = 0 
Query:  419 PFDHFNEKNWVAFQRPGCNELYFIYEWHP-LRIGALDKLSGTINFNMVISTPRSFRHLRGSSNGVVYKNDIWLLTHGTSWYRGPGPTYYHRIVVLDSETFEVKRCTYPFKLESTEAPIEFSLGLDIDRLGNVTIAYSVFDGSA 561
            PF     KNWV     G   L  +YEW+P +RIG +D+  G    +  I +P SF ++RGS+NG++++N+ W +TH      G    Y +R+V+L+ E  ++ R + PF   S E  IE+ LGL  D  G +T  YSV D S+
Sbjct:    4 PFGDRTGKNWVFVN--GIESL--VYEWYPFIRIGHIDRDKGEFVIDRSIQSPLSFLNMRGSTNGILHRNEWWFVTHMVKHRSGRRRIYTNRMVILNFEMSQILRYSLPFTFNS-ETDIEYCLGLKADNEG-LTFGYSVRDKSS 140
The following BLAST results are available for this feature:
BLAST of NO30G00200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM20240.13.100e-2529.26hypothetical protein Naga_100380g2 [Nannochloropsi... [more]
YP_009174077.16.800e-1729.31putative glycosyl transferase [Yellowstone lake mi... [more]
EWM20170.15.800e-1637.76hypothetical protein Naga_101281g2, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR074ncniR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00200.1NO30G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|662356gene_10480Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00200.1NO30G00200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00200 ID=NO30G00200|Name=NO30G00200|organism=Nannochloropsis oceanica|type=gene|length=2859bp
GTTGAGTACGCTACATCTAGAGAGATAGACTGCCAATAAAAGAGGAGCCC
GACTAAGAAATGTGGTCTGCCTTTTCAGCTATGCATGGTGCAGGCGTGAT
TTATGACTTCTGACAAAAGCAATTACAGCCATCCATTTCCCTCCCATCTC
ATAGCCTTCAACCCCCGCGCCAGGAGCACGGAGATAAATGTCGCATGGAA
TTTATAAACGGGTGCACTCTTCTTTGAGGACCAAATTACAGCATCGCAGA
GCGAGTGCATATCTCGCCATTTTGTTCTTGGCTTCAAGCGGCATTTACGT
CGCCGTTGTGCACAGGATATTGCACACTTTAACTTTGCAGCTAAAAAAGC
AAAATTCGTTTTCCAGAGGGACATTCTTGGGATATCACCGCGAAAGCTTA
CCACTAAGGCGCGTCGATAAATTGCTGGACTCGGCAGACACGTCCTACGC
AAGCCGCGATTATCAAAAGGCAGTGCTTCTATACCACGAAGCTCAAAAGG
CAGCCATAAAACTTAATTACCAGAAATATTTGTATCGCAGCCTTCATAAA
TTATCACAATGCCATATGGCACTCAATAATACAAAGGCAGCCATACACTA
TGCCCAAAAGGCCTTTGAGGTCCATCCCCGAGCAGAGCCTATGTTCCACG
TGGCCGAGTTTCTCGATGGTCTAGATCAAGAAGGACTATCAAGTCAAACC
TTCTACTACGCTGCCTGTTGCGCAGCTTCTAGACACCCATTTAGCGTTTC
AGAACATAAGATTCTCGACAAATTACGCGTGATAGATGAATCAAAGCTGT
GGCCGCGGCAATTCCCTGATGAATATCTGGCCAAGCTTGCATCGCTTCAG
GCCATCATGGACGATGACGAAGTGTCTACGGAGACCCATGAGCAGGTGCA
TTGGGAGATGACTACAAATACACGAGCAATTCTGGGTTGTTCTCAAGAGC
TATTTCGCAGGGAAGGTATATTCCATAACAACGGTACCTTTTACTACGCA
ACTCCATCTCTGATCCGTCGCCGAGAAAAATACGATAGTGCCGATAGCAG
CAACAGGCTGATTCCCAAGCAGGATACTAATATGGAGTACCTTATCTTGG
TCAGGCTCCTCAACTACCGCATCGACCACGAGGGTAGATGGTATAAGGAC
TTTCTGCCTAAGGCCCAGGATTCGGGCATATTACGGAGTGCATCAGCCTT
GTTTTTGAACGCCACAGATGAAGGTACTATCCTTCGGGTACATGATGGCT
GTTACGAAAAATCTCCAACACGTTTCTTGGGAACAGAGGATCCGAAGTTG
CTGGCGATGATCGATGGCACGATTCGCATAATTTGGACAAGTTGGGAATA
TGCCAAGACTGCAGGGGAAGGATCCCGACTGGCAATGGGCATTTTGGATA
TAGATTCTCTGACGATTCACTTAGATCACGTGTTTCCCAGCCCTTTTGAC
CATTTCAATGAGAAAAATTGGGTGGCCTTCCAACGGCCAGGCTGTAATGA
GCTTTACTTTATCTACGAGTGGCACCCCTTGAGAATAGGAGCTCTGGACA
AGCTTAGTGGCACCATTAATTTCAACATGGTGATTTCTACGCCTCGAAGC
TTTCGTCACCTACGAGGGTCTTCTAATGGGGTTGTCTACAAAAATGACAT
TTGGCTGCTCACGCACGGGACCTCGTGGTATAGAGGACCAGGCCCTACGT
ATTACCACCGCATAGTGGTATTGGATTCGGAAACGTTTGAGGTGAAGCGC
TGCACGTACCCTTTCAAATTGGAATCTACCGAGGCCCCCATTGAATTTTC
GCTTGGACTCGATATTGATCGTCTAGGAAATGTGACAATTGCTTACAGTG
TATTCGATGGATCCGCAGTTTTGCGTCGAATCCCCATCTGGAAGCTTGAG
GCACTGATGGTGACATCTCAGGAAATATATCTAGAGAGTTAGGTTTAGCT
TTTTTGATCGAAGCACATATCCACGTGTTTTTCCCAATCGAGGCCAAGGG
TTGCCTTGTATATACATACCGAGGGTTCCCCCCTTTCTGTGATTATTTTG
GGATGTTCTTGAGGCAAAAAAGCAATGAGGGGGGAAACATATTAAAGGGT
ATCTTTCCATTTCTACGACCGCTTGTGGCTGGAAAGGTGAGATTGATACA
GTCAGTGAGCGAAGGCATGGTATGGACAGGGTGCCCTTATGAGTTACAGG
CCTTTGTAGTATGTTGCGCCGAGCTGCATTTGTGGACTGGCGGTCGAAGT
GGGGGCATGTGCTTTGTCAGTCGCATACCGTTAAAGGATGCCGGCGATCA
TTGTTGTGTATTTGTAGGGAATGGCGGCGATGTATGTTTTAGGCGTCGTC
TTGATCCCTGGGACTCTCTTAGGCCCTCATGGCTCTTTGAATAGGGTTTA
TTTTTGACCATCAAATGGGCCAAACACATCAACACATCACAAATACATTT
TTAGCCGCTAGGTCCACGAGCTACTCTGCGCAGCGGTGTTTTGATTGCTG
GAAAGAGGAAGATGGTGGGCTCGTACGCTTGATGATGAACCCCCTCGGTG
TTTGTGCAGAGGTTATGGGAGGCTGGAGTGAAGAGGAATCTTTGTTTTCT
GAGGGAAATGTCTTTTACGACGACCGCTCTGATTTAAAGAACCAGAATCA
AACATTTCCTGCTGAGGCATGGCTGCACCAAAAATTTTGGGTCTCGGTGG
CGAATGTCAAGTCAGACCTGGCCAGGTTTCAAAGAGGAGACTGATTTCTA
AAGAAGGCCTTTGACGATGAGGGTTGGGCAATTTTTAGGATCTAAAATTA
AAGAAATAAATTGGAAGAGCAGTCCCATGTAAAAGTCTTCTAGAAATGTC
GTACATGTC
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protein sequence of NO30G00200.1

>NO30G00200.1-protein ID=NO30G00200.1-protein|Name=NO30G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=585bp
MSHGIYKRVHSSLRTKLQHRRASAYLAILFLASSGIYVAVVHRILHTLTL
QLKKQNSFSRGTFLGYHRESLPLRRVDKLLDSADTSYASRDYQKAVLLYH
EAQKAAIKLNYQKYLYRSLHKLSQCHMALNNTKAAIHYAQKAFEVHPRAE
PMFHVAEFLDGLDQEGLSSQTFYYAACCAASRHPFSVSEHKILDKLRVID
ESKLWPRQFPDEYLAKLASLQAIMDDDEVSTETHEQVHWEMTTNTRAILG
CSQELFRREGIFHNNGTFYYATPSLIRRREKYDSADSSNRLIPKQDTNME
YLILVRLLNYRIDHEGRWYKDFLPKAQDSGILRSASALFLNATDEGTILR
VHDGCYEKSPTRFLGTEDPKLLAMIDGTIRIIWTSWEYAKTAGEGSRLAM
GILDIDSLTIHLDHVFPSPFDHFNEKNWVAFQRPGCNELYFIYEWHPLRI
GALDKLSGTINFNMVISTPRSFRHLRGSSNGVVYKNDIWLLTHGTSWYRG
PGPTYYHRIVVLDSETFEVKRCTYPFKLESTEAPIEFSLGLDIDRLGNVT
IAYSVFDGSAVLRRIPIWKLEALMVTSQEIYLES*
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Synonyms
Publications