NO30G00200.1, NO30G00200.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO30G00200.1
Unique Name	NO30G00200.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2859
Alignment location	chr30:86150..89008 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr30	genome	chr30:86150..89008 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO30G00200.1 vs.
Match: EWM20240.1 (hypothetical protein Naga_100380g2 [Nannochloropsis gaditana])

HSP 1 Score: 124.0 bits (310), Expect = 1.500e-24
Identity = 73/201 (36.32%), Postives = 112/201 (55.72%), Query Frame = 0

Query:  361 TRFLGTEDPKLLAMIDGTIRIIWTSWEYAKTAGEGSRLAMGILDIDSLTIHLDHVFPSPFDHFNEKNWVAFQRPGCNELYFIYEWHP-LRIGALDKLSGTINFNMVISTPRSFRHLRGSSNGVVYKNDIWLLTHGTSWYRGPGPTYYHRIVVLDSETFEVKRCTYPFKLESTEAPIEFSLGLDIDRLGNVTIAYSVFDGSA 561
            TRF  T D K  + +  T+     S EY+++A   ++L +G+++ D+ T+ +  +   PF    EKNWV     G   L  +YEW+P +RIG +D+  G    +  I +P SF ++RGS+NG++++N+ W +TH      G    Y HRIV+L+ E  +V R + PF   S E  IE+ LGL  D  G +T  YSV D S+
Sbjct:  340 TRFKSTFDYKANSSVIYTLS---ASMEYSRSANHMNQL-LGVIEPDTWTLTIQDIIRGPFGDRTEKNWVFVN--GIESL--VYEWYPFIRIGHIDRDKGEFVIDRSIQSPLSFLNMRGSTNGILHRNEWWFVTHMVKHRSGRRRIYTHRIVILNFEMSQVLRYSLPFTFNS-ETDIEYCLGLKADNEG-LTFGYSVRDKSS 530

The following BLAST results are available for this feature:

BLAST of NO30G00200.1 vs.

BLAST of NO30G00200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20240.1	1.500e-24	36.32	hypothetical protein Naga_100380g2 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO30G00200	NO30G00200	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00200.1	NO30G00200.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00200.1.cds1	NO30G00200.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr30:86150..89008+
coding sequence from alignment at chr30:86150..89008+

mRNA sequence

>NO30G00200.1 ID=NO30G00200.1|Name=NO30G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2859bp
GTTGAGTACGCTACATCTAGAGAGATAGACTGCCAATAAAAGAGGAGCCC
GACTAAGAAATGTGGTCTGCCTTTTCAGCTATGCATGGTGCAGGCGTGAT
TTATGACTTCTGACAAAAGCAATTACAGCCATCCATTTCCCTCCCATCTC
ATAGCCTTCAACCCCCGCGCCAGGAGCACGGAGATAAATGTCGCATGGAA
TTTATAAACGGGTGCACTCTTCTTTGAGGACCAAATTACAGCATCGCAGA
GCGAGTGCATATCTCGCCATTTTGTTCTTGGCTTCAAGCGGCATTTACGT
CGCCGTTGTGCACAGGATATTGCACACTTTAACTTTGCAGCTAAAAAAGC
AAAATTCGTTTTCCAGAGGGACATTCTTGGGATATCACCGCGAAAGCTTA
CCACTAAGGCGCGTCGATAAATTGCTGGACTCGGCAGACACGTCCTACGC
AAGCCGCGATTATCAAAAGGCAGTGCTTCTATACCACGAAGCTCAAAAGG
CAGCCATAAAACTTAATTACCAGAAATATTTGTATCGCAGCCTTCATAAA
TTATCACAATGCCATATGGCACTCAATAATACAAAGGCAGCCATACACTA
TGCCCAAAAGGCCTTTGAGGTCCATCCCCGAGCAGAGCCTATGTTCCACG
TGGCCGAGTTTCTCGATGGTCTAGATCAAGAAGGACTATCAAGTCAAACC
TTCTACTACGCTGCCTGTTGCGCAGCTTCTAGACACCCATTTAGCGTTTC
AGAACATAAGATTCTCGACAAATTACGCGTGATAGATGAATCAAAGCTGT
GGCCGCGGCAATTCCCTGATGAATATCTGGCCAAGCTTGCATCGCTTCAG
GCCATCATGGACGATGACGAAGTGTCTACGGAGACCCATGAGCAGGTGCA
TTGGGAGATGACTACAAATACACGAGCAATTCTGGGTTGTTCTCAAGAGC
TATTTCGCAGGGAAGGTATATTCCATAACAACGGTACCTTTTACTACGCA
ACTCCATCTCTGATCCGTCGCCGAGAAAAATACGATAGTGCCGATAGCAG
CAACAGGCTGATTCCCAAGCAGGATACTAATATGGAGTACCTTATCTTGG
TCAGGCTCCTCAACTACCGCATCGACCACGAGGGTAGATGGTATAAGGAC
TTTCTGCCTAAGGCCCAGGATTCGGGCATATTACGGAGTGCATCAGCCTT
GTTTTTGAACGCCACAGATGAAGGTACTATCCTTCGGGTACATGATGGCT
GTTACGAAAAATCTCCAACACGTTTCTTGGGAACAGAGGATCCGAAGTTG
CTGGCGATGATCGATGGCACGATTCGCATAATTTGGACAAGTTGGGAATA
TGCCAAGACTGCAGGGGAAGGATCCCGACTGGCAATGGGCATTTTGGATA
TAGATTCTCTGACGATTCACTTAGATCACGTGTTTCCCAGCCCTTTTGAC
CATTTCAATGAGAAAAATTGGGTGGCCTTCCAACGGCCAGGCTGTAATGA
GCTTTACTTTATCTACGAGTGGCACCCCTTGAGAATAGGAGCTCTGGACA
AGCTTAGTGGCACCATTAATTTCAACATGGTGATTTCTACGCCTCGAAGC
TTTCGTCACCTACGAGGGTCTTCTAATGGGGTTGTCTACAAAAATGACAT
TTGGCTGCTCACGCACGGGACCTCGTGGTATAGAGGACCAGGCCCTACGT
ATTACCACCGCATAGTGGTATTGGATTCGGAAACGTTTGAGGTGAAGCGC
TGCACGTACCCTTTCAAATTGGAATCTACCGAGGCCCCCATTGAATTTTC
GCTTGGACTCGATATTGATCGTCTAGGAAATGTGACAATTGCTTACAGTG
TATTCGATGGATCCGCAGTTTTGCGTCGAATCCCCATCTGGAAGCTTGAG
GCACTGATGGTGACATCTCAGGAAATATATCTAGAGAGTTAGGTTTAGCT
TTTTTGATCGAAGCACATATCCACGTGTTTTTCCCAATCGAGGCCAAGGG
TTGCCTTGTATATACATACCGAGGGTTCCCCCCTTTCTGTGATTATTTTG
GGATGTTCTTGAGGCAAAAAAGCAATGAGGGGGGAAACATATTAAAGGGT
ATCTTTCCATTTCTACGACCGCTTGTGGCTGGAAAGGTGAGATTGATACA
GTCAGTGAGCGAAGGCATGGTATGGACAGGGTGCCCTTATGAGTTACAGG
CCTTTGTAGTATGTTGCGCCGAGCTGCATTTGTGGACTGGCGGTCGAAGT
GGGGGCATGTGCTTTGTCAGTCGCATACCGTTAAAGGATGCCGGCGATCA
TTGTTGTGTATTTGTAGGGAATGGCGGCGATGTATGTTTTAGGCGTCGTC
TTGATCCCTGGGACTCTCTTAGGCCCTCATGGCTCTTTGAATAGGGTTTA
TTTTTGACCATCAAATGGGCCAAACACATCAACACATCACAAATACATTT
TTAGCCGCTAGGTCCACGAGCTACTCTGCGCAGCGGTGTTTTGATTGCTG
GAAAGAGGAAGATGGTGGGCTCGTACGCTTGATGATGAACCCCCTCGGTG
TTTGTGCAGAGGTTATGGGAGGCTGGAGTGAAGAGGAATCTTTGTTTTCT
GAGGGAAATGTCTTTTACGACGACCGCTCTGATTTAAAGAACCAGAATCA
AACATTTCCTGCTGAGGCATGGCTGCACCAAAAATTTTGGGTCTCGGTGG
CGAATGTCAAGTCAGACCTGGCCAGGTTTCAAAGAGGAGACTGATTTCTA
AAGAAGGCCTTTGACGATGAGGGTTGGGCAATTTTTAGGATCTAAAATTA
AAGAAATAAATTGGAAGAGCAGTCCCATGTAAAAGTCTTCTAGAAATGTC
GTACATGTC

protein sequence of NO30G00200.1

>NO30G00200.1-protein ID=NO30G00200.1-protein|Name=NO30G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=585bp
MSHGIYKRVHSSLRTKLQHRRASAYLAILFLASSGIYVAVVHRILHTLTL
QLKKQNSFSRGTFLGYHRESLPLRRVDKLLDSADTSYASRDYQKAVLLYH
EAQKAAIKLNYQKYLYRSLHKLSQCHMALNNTKAAIHYAQKAFEVHPRAE
PMFHVAEFLDGLDQEGLSSQTFYYAACCAASRHPFSVSEHKILDKLRVID
ESKLWPRQFPDEYLAKLASLQAIMDDDEVSTETHEQVHWEMTTNTRAILG
CSQELFRREGIFHNNGTFYYATPSLIRRREKYDSADSSNRLIPKQDTNME
YLILVRLLNYRIDHEGRWYKDFLPKAQDSGILRSASALFLNATDEGTILR
VHDGCYEKSPTRFLGTEDPKLLAMIDGTIRIIWTSWEYAKTAGEGSRLAM
GILDIDSLTIHLDHVFPSPFDHFNEKNWVAFQRPGCNELYFIYEWHPLRI
GALDKLSGTINFNMVISTPRSFRHLRGSSNGVVYKNDIWLLTHGTSWYRG
PGPTYYHRIVVLDSETFEVKRCTYPFKLESTEAPIEFSLGLDIDRLGNVT
IAYSVFDGSAVLRRIPIWKLEALMVTSQEIYLES*

mRNA from alignment at chr30:86150..89008+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO30G00200.1 ID=NO30G00200.1|Name=NO30G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2859bp|location=Sequence derived from alignment at chr30:86150..89008+ (Nannochloropsis oceanica)
GTTGAGTACGCTACATCTAGAGAGATAGACTGCCAATAAAAGAGGAGCCC
GACTAAGAAATGTGGTCTGCCTTTTCAGCTATGCATGGTGCAGGCGTGAT
TTATGACTTCTGACAAAAGCAATTACAGCCATCCATTTCCCTCCCATCTC
ATAGCCTTCAACCCCCGCGCCAGGAGCACGGAGATAAATGTCGCATGGAA
TTTATAAACGGGTGCACTCTTCTTTGAGGACCAAATTACAGCATCGCAGA
GCGAGTGCATATCTCGCCATTTTGTTCTTGGCTTCAAGCGGCATTTACGT
CGCCGTTGTGCACAGGATATTGCACACTTTAACTTTGCAGCTAAAAAAGC
AAAATTCGTTTTCCAGAGGGACATTCTTGGGATATCACCGCGAAAGCTTA
CCACTAAGGCGCGTCGATAAATTGCTGGACTCGGCAGACACGTCCTACGC
AAGCCGCGATTATCAAAAGGCAGTGCTTCTATACCACGAAGCTCAAAAGG
CAGCCATAAAACTTAATTACCAGAAATATTTGTATCGCAGCCTTCATAAA
TTATCACAATGCCATATGGCACTCAATAATACAAAGGCAGCCATACACTA
TGCCCAAAAGGCCTTTGAGGTCCATCCCCGAGCAGAGCCTATGTTCCACG
TGGCCGAGTTTCTCGATGGTCTAGATCAAGAAGGACTATCAAGTCAAACC
TTCTACTACGCTGCCTGTTGCGCAGCTTCTAGACACCCATTTAGCGTTTC
AGAACATAAGATTCTCGACAAATTACGCGTGATAGATGAATCAAAGCTGT
GGCCGCGGCAATTCCCTGATGAATATCTGGCCAAGCTTGCATCGCTTCAG
GCCATCATGGACGATGACGAAGTGTCTACGGAGACCCATGAGCAGGTGCA
TTGGGAGATGACTACAAATACACGAGCAATTCTGGGTTGTTCTCAAGAGC
TATTTCGCAGGGAAGGTATATTCCATAACAACGGTACCTTTTACTACGCA
ACTCCATCTCTGATCCGTCGCCGAGAAAAATACGATAGTGCCGATAGCAG
CAACAGGCTGATTCCCAAGCAGGATACTAATATGGAGTACCTTATCTTGG
TCAGGCTCCTCAACTACCGCATCGACCACGAGGGTAGATGGTATAAGGAC
TTTCTGCCTAAGGCCCAGGATTCGGGCATATTACGGAGTGCATCAGCCTT
GTTTTTGAACGCCACAGATGAAGGTACTATCCTTCGGGTACATGATGGCT
GTTACGAAAAATCTCCAACACGTTTCTTGGGAACAGAGGATCCGAAGTTG
CTGGCGATGATCGATGGCACGATTCGCATAATTTGGACAAGTTGGGAATA
TGCCAAGACTGCAGGGGAAGGATCCCGACTGGCAATGGGCATTTTGGATA
TAGATTCTCTGACGATTCACTTAGATCACGTGTTTCCCAGCCCTTTTGAC
CATTTCAATGAGAAAAATTGGGTGGCCTTCCAACGGCCAGGCTGTAATGA
GCTTTACTTTATCTACGAGTGGCACCCCTTGAGAATAGGAGCTCTGGACA
AGCTTAGTGGCACCATTAATTTCAACATGGTGATTTCTACGCCTCGAAGC
TTTCGTCACCTACGAGGGTCTTCTAATGGGGTTGTCTACAAAAATGACAT
TTGGCTGCTCACGCACGGGACCTCGTGGTATAGAGGACCAGGCCCTACGT
ATTACCACCGCATAGTGGTATTGGATTCGGAAACGTTTGAGGTGAAGCGC
TGCACGTACCCTTTCAAATTGGAATCTACCGAGGCCCCCATTGAATTTTC
GCTTGGACTCGATATTGATCGTCTAGGAAATGTGACAATTGCTTACAGTG
TATTCGATGGATCCGCAGTTTTGCGTCGAATCCCCATCTGGAAGCTTGAG
GCACTGATGGTGACATCTCAGGAAATATATCTAGAGAGTTAGGTTTAGCT
TTTTTGATCGAAGCACATATCCACGTGTTTTTCCCAATCGAGGCCAAGGG
TTGCCTTGTATATACATACCGAGGGTTCCCCCCTTTCTGTGATTATTTTG
GGATGTTCTTGAGGCAAAAAAGCAATGAGGGGGGAAACATATTAAAGGGT
ATCTTTCCATTTCTACGACCGCTTGTGGCTGGAAAGGTGAGATTGATACA
GTCAGTGAGCGAAGGCATGGTATGGACAGGGTGCCCTTATGAGTTACAGG
CCTTTGTAGTATGTTGCGCCGAGCTGCATTTGTGGACTGGCGGTCGAAGT
GGGGGCATGTGCTTTGTCAGTCGCATACCGTTAAAGGATGCCGGCGATCA
TTGTTGTGTATTTGTAGGGAATGGCGGCGATGTATGTTTTAGGCGTCGTC
TTGATCCCTGGGACTCTCTTAGGCCCTCATGGCTCTTTGAATAGGGTTTA
TTTTTGACCATCAAATGGGCCAAACACATCAACACATCACAAATACATTT
TTAGCCGCTAGGTCCACGAGCTACTCTGCGCAGCGGTGTTTTGATTGCTG
GAAAGAGGAAGATGGTGGGCTCGTACGCTTGATGATGAACCCCCTCGGTG
TTTGTGCAGAGGTTATGGGAGGCTGGAGTGAAGAGGAATCTTTGTTTTCT
GAGGGAAATGTCTTTTACGACGACCGCTCTGATTTAAAGAACCAGAATCA
AACATTTCCTGCTGAGGCATGGCTGCACCAAAAATTTTGGGTCTCGGTGG
CGAATGTCAAGTCAGACCTGGCCAGGTTTCAAAGAGGAGACTGATTTCTA
AAGAAGGCCTTTGACGATGAGGGTTGGGCAATTTTTAGGATCTAAAATTA
AAGAAATAAATTGGAAGAGCAGTCCCATGTAAAAGTCTTCTAGAAATGTC
GTACATGTC

Coding sequence (CDS) from alignment at chr30:86150..89008+

>NO30G00200.1 ID=NO30G00200.1|Name=NO30G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=1755bp|location=Sequence derived from alignment at chr30:86150..89008+ (Nannochloropsis oceanica)
ATGTCGCATGGAATTTATAAACGGGTGCACTCTTCTTTGAGGACCAAATT
ACAGCATCGCAGAGCGAGTGCATATCTCGCCATTTTGTTCTTGGCTTCAA
GCGGCATTTACGTCGCCGTTGTGCACAGGATATTGCACACTTTAACTTTG
CAGCTAAAAAAGCAAAATTCGTTTTCCAGAGGGACATTCTTGGGATATCA
CCGCGAAAGCTTACCACTAAGGCGCGTCGATAAATTGCTGGACTCGGCAG
ACACGTCCTACGCAAGCCGCGATTATCAAAAGGCAGTGCTTCTATACCAC
GAAGCTCAAAAGGCAGCCATAAAACTTAATTACCAGAAATATTTGTATCG
CAGCCTTCATAAATTATCACAATGCCATATGGCACTCAATAATACAAAGG
CAGCCATACACTATGCCCAAAAGGCCTTTGAGGTCCATCCCCGAGCAGAG
CCTATGTTCCACGTGGCCGAGTTTCTCGATGGTCTAGATCAAGAAGGACT
ATCAAGTCAAACCTTCTACTACGCTGCCTGTTGCGCAGCTTCTAGACACC
CATTTAGCGTTTCAGAACATAAGATTCTCGACAAATTACGCGTGATAGAT
GAATCAAAGCTGTGGCCGCGGCAATTCCCTGATGAATATCTGGCCAAGCT
TGCATCGCTTCAGGCCATCATGGACGATGACGAAGTGTCTACGGAGACCC
ATGAGCAGGTGCATTGGGAGATGACTACAAATACACGAGCAATTCTGGGT
TGTTCTCAAGAGCTATTTCGCAGGGAAGGTATATTCCATAACAACGGTAC
CTTTTACTACGCAACTCCATCTCTGATCCGTCGCCGAGAAAAATACGATA
GTGCCGATAGCAGCAACAGGCTGATTCCCAAGCAGGATACTAATATGGAG
TACCTTATCTTGGTCAGGCTCCTCAACTACCGCATCGACCACGAGGGTAG
ATGGTATAAGGACTTTCTGCCTAAGGCCCAGGATTCGGGCATATTACGGA
GTGCATCAGCCTTGTTTTTGAACGCCACAGATGAAGGTACTATCCTTCGG
GTACATGATGGCTGTTACGAAAAATCTCCAACACGTTTCTTGGGAACAGA
GGATCCGAAGTTGCTGGCGATGATCGATGGCACGATTCGCATAATTTGGA
CAAGTTGGGAATATGCCAAGACTGCAGGGGAAGGATCCCGACTGGCAATG
GGCATTTTGGATATAGATTCTCTGACGATTCACTTAGATCACGTGTTTCC
CAGCCCTTTTGACCATTTCAATGAGAAAAATTGGGTGGCCTTCCAACGGC
CAGGCTGTAATGAGCTTTACTTTATCTACGAGTGGCACCCCTTGAGAATA
GGAGCTCTGGACAAGCTTAGTGGCACCATTAATTTCAACATGGTGATTTC
TACGCCTCGAAGCTTTCGTCACCTACGAGGGTCTTCTAATGGGGTTGTCT
ACAAAAATGACATTTGGCTGCTCACGCACGGGACCTCGTGGTATAGAGGA
CCAGGCCCTACGTATTACCACCGCATAGTGGTATTGGATTCGGAAACGTT
TGAGGTGAAGCGCTGCACGTACCCTTTCAAATTGGAATCTACCGAGGCCC
CCATTGAATTTTCGCTTGGACTCGATATTGATCGTCTAGGAAATGTGACA
ATTGCTTACAGTGTATTCGATGGATCCGCAGTTTTGCGTCGAATCCCCAT
CTGGAAGCTTGAGGCACTGATGGTGACATCTCAGGAAATATATCTAGAGA
GTTAG

Synonyms

Publications