NO30G00120, NO30G00120 (gene) Nannochloropsis oceanica

Overview
NameNO30G00120
Unique NameNO30G00120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2045
Alignment locationchr30:59860..61904 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:59860..61904 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO30G00120 vs. NCBI_GenBank
Match: GAX11237.1 (hypothetical protein FisN_34Hu042 [Fistulifera solaris])

HSP 1 Score: 77.8 bits (190), Expect = 6.500e-11
Identity = 75/283 (26.50%), Postives = 124/283 (43.82%), Query Frame = 0 
Query:   28 AGLGDRFFQLLVGLTYALHLNAFLVNVDSEMSTNSTHGPYDWVPNFFKINYVNSNITMDAIKDRYSNLTVVKQVEEY----GRSYEERIQALGSHCNTVIQIDND-DCDGGPECYFSHNP-------KIYEHMHNIMACWFLHTDRS--NLPALIFDSGWYNVAIHLRVGDVVLFDGDRGKDFFTKLKSQLDKVLIFS--PVHYFFFVEAPYDELVNEPAVPPTGFAFLADIFEDRSHGNEGTFSQRKSYIKHMGVKESLYHYMNADMVIATGSSFPLVAVTV 295
            AGLG +  +++ G+  A   N+  V  D     N THG YDW+ +F  +N   +  T   ++   S+  V   ++ +     +S EE      + CN +     +  CD    CY + +P       ++   M    +       RS  +L AL  +     +  H+R GD+VL   +  K+ F KL SQ+  VL     PVH F + +    E           F FL  + +    GN        SY   + V++SLY+ + +D++I +GSSFP++A  +
Sbjct:   84 AGLGHKVTEVIFGMVMAEETNSVFVLDDHIWLENGTHGSYDWLMDFLPLN--ETEFTKSELEALSSDTPVTTVLDRWDVVVNQSKEE-----NNACNVLFSTRLEWCCDSADICYCTMHPPRIGSFDRVKWRMREAFSRSKYVPSRSLLDLGALPKNEPILTIVWHVRQGDIVL---NARKEHFDKLASQIASVLSIGRIPVHVFLYGDGEIFE----------NFPFLPYLCQQYFGGN-------CSY-PALDVRDSLYYMIESDVLITSGSSFPIIAAVL 338
[Close]
BLAST of NO30G00120 vs. NCBI_GenBank
Match: GAX11239.1 (hypothetical protein FisN_34Hu040 [Fistulifera solaris])

HSP 1 Score: 69.3 bits (168), Expect = 2.300e-8
Identity = 72/281 (25.62%), Postives = 118/281 (41.99%), Query Frame = 0 
Query:   28 AGLGDRFFQLLVGLTYALHLNAFLVNVDSEMSTNSTHGPYDWVPNFFKINYVNSNITMDAIKDRYSNLTVVKQVEEYGRSYEERIQALGSHCNTVIQID-NDDCDGGPECYFSHNPKIYEHMHNIMACWFLHTDRSN---LPAL-IFDSG-------WYNVAIHLRVGDVVLFDGDRGKDFFTKLKSQLDKVLIFS--PVHYFFFVEAPYDELVNEPAVPPTGFAFLADIFEDRSHGNEGTFSQRKSYIKHMGVKESLYHYMNADMVIATGSSFPLVAVTV 295
            AGLG +  +++ G+  A   N+  +  D+  +    HG YDW+ NF  +N   +  TM     R S    +  V +      ++ +   + CN +     +  CD    CY +           +   W +    S    +P+L + D G          +  H+R GD+VL   +  K+ F  L SQ+  VL     PVH F + E    E           F FL D+ +    GN        SY   + V++SLY+   +D++I +GSSFP++A  +
Sbjct:   97 AGLGHKLTEVIFGMIIAEETNSTFLLDDTIWNHVGNHGSYDWLMNFLPLN--ETEFTMSEFA-RISKDNPIPTVLDRWDGLVDQSKNESNACNVLFMTYLHWCCDSANICYCTTQQARIGTFDRVK--WRMQEAFSRSKYVPSLSLLDLGKLPKHEPILTIVWHVRQGDIVL---NAQKEHFDNLSSQITSVLSIGKIPVHVFIYGEGEVFE----------KFPFLPDLCQQYFGGN-------CSY-PTLDVRDSLYYMTESDVLITSGSSFPIIAAVL 351
The following BLAST results are available for this feature:
BLAST of NO30G00120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
GAX11237.16.500e-1126.50hypothetical protein FisN_34Hu042 [Fistulifera sol... [more]
GAX11239.12.300e-825.62hypothetical protein FisN_34Hu040 [Fistulifera sol... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR074ncniR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00120.1NO30G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO30G00120.2NO30G00120.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610732gene_10483Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00120.1NO30G00120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO30G00120.2NO30G00120.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00120 ID=NO30G00120|Name=NO30G00120|organism=Nannochloropsis oceanica|type=gene|length=2045bp
CAGACCAAAATTGCAGGAGAAAATGGACATTCTAAGTGACCGTAAGCCAA
GGCCCAGGTCAACTCAGCTTTTGCTGTCCCTATGGCAAATCATTGGTATA
TTCACATGCCTAATCACTTTGGTAGGCATATCGGATATCTTTCAAgtaag
tggaatgcataacagagtgacaactaagactcaccaaacactcatgctat
tttgtgccatcttcttctcggaatgacagACGCAGACACTGCTTGCCCAG
AAAAATCTGCAAATGATCCAGCTGCTGgtaagccctacgtggtgcatatg
attgtcaccatcataatgattacattattattcaaatctcttctccttag
GGAGTGACGAATGTAAAAAAATTATCGTCCTCTCCGATGCCCGCAGCATT
CGGTAACCAGCTGCCCACGTGCGACTTTCACATGGGTGATATCGATCCAG
CATGTCCGCGATTCGTCAACATTCGATTTCGTACGTGCTATTTCATCTAT
GCAGTCAAGTTCATTTTTGCTAATGCACGCCATTGTATCGTTTATTTACC
TTATCAATGAGACAGGATGGTTAGAGCGGGCAGGGCTGGGAGACCGTTTC
TTCCAGCTATTGGTCGGCCTAACATATGCACTTCATCTCAATGgtacgaa
aaaatattacgtttgttgcccgcataagcaagatatgttgtagaaggcta
atttcttccctcaaaacccacttcacagCTTTCCTAGTGAATGTGGACTC
AGAAATGAGTACCAACTCGACGCACGGCCCGTACGACTGGGTACCCAATT
TCTTCAAAATAAATTATGTGAACTCGAACATAACGATGGACGCCATAAAA
GATCGCTACAGCAATTTGACAGTTGTGAAGCAAGTGGAGGAGgtaacatc
agaagcatgaaatttctgcgccctaaacaatgtgtatttatatatataat
gtatatgattatgatcctacccctaaacaagTACGGCAGAAGCTATGAGG
AAAGAATACAAGCTCTCGGGTCGCATTGCAATACTGTCATTCAAATTGAC
AATGACgtgagtaatgatgaggagacaaaggacatgggctataaaataaa
caaatacttacttacttcacgtacaaatcgtatttttgatttgtgaaagG
ATTGCGATGGAGGACCGGAATGTTATTTCTCGCACAACCCGAAAATTTAT
GAGCACATGCATAACATTATGGCCTGCTGGTTTTTGCACACTGACCGGTC
TAATCTACCTGCACTCATCTTTGATTCGGGTTGGTATAATGTCGCTATTC
ATgtaagtcatgacacaatatgtttatgacagcagttccccccgatttcc
cgcctaattaaaattgttatcaattccattttatattctagCTGCGCGTT
GGTGATGTGGTGCTGTTTGATGGCGACCGAGGCAAAGACTTCTTTACGAA
GCTCAAAAGCCAGCTCGACAAAGTGCTGATCTTCTCTCCGGTCCATTACT
TTTTCTTTGTGGAAGCGCCTTACGATGAATTAGTCAATGAGCCTGCAGTC
CCCCCTACTGGATTCGCCTTTCTGGCTGACATCTTTGAGGACAGAAGTCA
TGGAAATGAGGGTACCTTTTCACAACGAAAGTCCTATATTAAACATATGG
GTGTCAAAGAGTCGCTATACCATTACATGAATGCGGACATGGTCATCGCC
ACTGGATCCTCGTTTCCATTGGTTGCAGTTACGGTATCGTCTAAGGTACG
TGCACGAAGATCTTGCTAATTCTGGTTCTCTAGTCGTTTCCCAATCTTAC
ACATATTTCTACTGTTTTCAGCCCGTAGTGCTATTCACCAAATCAAAAGA
AGGGGGCTTTTATCCCTCCCAGATGCGAGGAGATTATGCAATGATTGGAG
ATGACGGGGCGATCACATCTCCTACGATTGCAGAATTGTCGGCACAAGCC
CTGATGCGGTTCCTAGAAGTGCACGAAAAAAGAGTGCCTTATGAGTAAAA
TTTTCATTTTAAAGAATGAGTAACGTACGTCACTGTTGTGTTGAA
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protein sequence of NO30G00120.1

>NO30G00120.1-protein ID=NO30G00120.1-protein|Name=NO30G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MDILSDRKPRPRSTQLLLSLWQIIGIFTCLITLVGISDIFQTQTLLAQKN
LQMIQLLGVTNVKKLSSSPMPAAFGNQLPTCDFHMGDIDPACPRFVNIRF
RWLERAGLGDRFFQLLVGLTYALHLNAFLVNVDSEMSTNSTHGPYDWVPN
FFKINYVNSNITMDAIKDRYSNLTVVKQVEEYGRSYEERIQALGSHCNTV
IQIDNDDCDGGPECYFSHNPKIYEHMHNIMACWFLHTDRSNLPALIFDSG
WYNVAIHLRVGDVVLFDGDRGKDFFTKLKSQLDKVLIFSPVHYFFFVEAP
YDELVNEPAVPPTGFAFLADIFEDRSHGNEGTFSQRKSYIKHMGVKESLY
HYMNADMVIATGSSFPLVAVTVSSKVRARRSC*
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protein sequence of NO30G00120.2

>NO30G00120.2-protein ID=NO30G00120.2-protein|Name=NO30G00120.2|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MQSSSFLLMHAIVSFIYLINETGWLERAGLGDRFFQLLVGLTYALHLNAF
LVNVDSEMSTNSTHGPYDWVPNFFKINYVNSNITMDAIKDRYSNLTVVKQ
VEEYGRSYEERIQALGSHCNTVIQIDNDDCDGGPECYFSHNPKIYEHMHN
IMACWFLHTDRSNLPALIFDSGWYNVAIHLRVGDVVLFDGDRGKDFFTKL
KSQLDKVLIFSPVHYFFFVEAPYDELVNEPAVPPTGFAFLADIFEDRSHG
NEGTFSQRKSYIKHMGVKESLYHYMNADMVIATGSSFPLVAVTVSSKVRA
RRSC*
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Synonyms
Publications