NO30G00120.1, NO30G00120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00120.1
Unique NameNO30G00120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1447
Alignment locationchr30:59860..61904 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:59860..61904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00120.1 vs.
Match: GAX11237.1 (hypothetical protein FisN_34Hu042 [Fistulifera solaris])

HSP 1 Score: 83.6 bits (205), Expect = 1.500e-12
Identity = 79/298 (26.51%), Postives = 130/298 (43.62%), Query Frame = 0 
Query:   88 IDPACPRFVNIRFRWLERAGLGDRFFQLLVGLTYALHLNAFLVNVDSEMSTNSTHGPYDWVPNFFKINYVN-SNITMDAIKDRYSNLTVVKQVEEYGRSYEERIQALGSHCNTVIQIDND-DCDGGPECYFSHNP-------KIYEHMHNIMACWFLHTDRS--NLPALIFDSGWYNVAIHLRVGDVVLFDGDRGKDFFTKLKSQLDKVLIFS--PVHYFFFVEAPYDELVNEPAVPPTGFAFLADIFEDRSHGNEGTFSQRKSYIKHMGVKESLYHYMNADMVIATGSSFPLVAVTV 373
            ID +C RF  +   +   AGLG +  +++ G+  A   N+  V  D     N THG YDW+ +F  +N    +   ++A+       TV+ + +      +E   A    CN +     +  CD    CY + +P       ++   M    +       RS  +L AL  +     +  H+R GD+VL   +  K+ F KL SQ+  VL     PVH F + +    E           F FL  + +    GN        SY   + V++SLY+ + +D++I +GSSFP++A  +
Sbjct:   68 IDTSCLRFATMEQTFA--AGLGHKVTEVIFGMVMAEETNSVFVLDDHIWLENGTHGSYDWLMDFLPLNETEFTKSELEALSSDTPVTTVLDRWDVVVNQSKEENNA----CNVLFSTRLEWCCDSADICYCTMHPPRIGSFDRVKWRMREAFSRSKYVPSRSLLDLGALPKNEPILTIVWHVRQGDIVL---NARKEHFDKLASQIASVLSIGRIPVHVFLYGDGEIFE----------NFPFLPYLCQQYFGGN-------CSY-PALDVRDSLYYMIESDVLITSGSSFPIIAAVL 338
The following BLAST results are available for this feature:
BLAST of NO30G00120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAX11237.11.500e-1226.51hypothetical protein FisN_34Hu042 [Fistulifera sol... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00120NO30G00120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00120.1NO30G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00120.1.cds1NO30G00120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00120.1.cds2NO30G00120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00120.1.cds3NO30G00120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00120.1.cds4NO30G00120.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00120.1.cds5NO30G00120.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00120.1.cds6NO30G00120.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00120.1.cds7NO30G00120.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00120.1.cds8NO30G00120.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00120.1 ID=NO30G00120.1|Name=NO30G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1447bp
CAGACCAAAATTGCAGGAGAAAATGGACATTCTAAGTGACCGTAAGCCAA
GGCCCAGGTCAACTCAGCTTTTGCTGTCCCTATGGCAAATCATTGGTATA
TTCACATGCCTAATCACTTTGGTAGGCATATCGGATATCTTTCAAACGCA
GACACTGCTTGCCCAGAAAAATCTGCAAATGATCCAGCTGCTGGGAGTGA
CGAATGTAAAAAAATTATCGTCCTCTCCGATGCCCGCAGCATTCGGTAAC
CAGCTGCCCACGTGCGACTTTCACATGGGTGATATCGATCCAGCATGTCC
GCGATTCGTCAACATTCGATTTCGATGGTTAGAGCGGGCAGGGCTGGGAG
ACCGTTTCTTCCAGCTATTGGTCGGCCTAACATATGCACTTCATCTCAAT
GCTTTCCTAGTGAATGTGGACTCAGAAATGAGTACCAACTCGACGCACGG
CCCGTACGACTGGGTACCCAATTTCTTCAAAATAAATTATGTGAACTCGA
ACATAACGATGGACGCCATAAAAGATCGCTACAGCAATTTGACAGTTGTG
AAGCAAGTGGAGGAGTACGGCAGAAGCTATGAGGAAAGAATACAAGCTCT
CGGGTCGCATTGCAATACTGTCATTCAAATTGACAATGACGATTGCGATG
GAGGACCGGAATGTTATTTCTCGCACAACCCGAAAATTTATGAGCACATG
CATAACATTATGGCCTGCTGGTTTTTGCACACTGACCGGTCTAATCTACC
TGCACTCATCTTTGATTCGGGTTGGTATAATGTCGCTATTCATCTGCGCG
TTGGTGATGTGGTGCTGTTTGATGGCGACCGAGGCAAAGACTTCTTTACG
AAGCTCAAAAGCCAGCTCGACAAAGTGCTGATCTTCTCTCCGGTCCATTA
CTTTTTCTTTGTGGAAGCGCCTTACGATGAATTAGTCAATGAGCCTGCAG
TCCCCCCTACTGGATTCGCCTTTCTGGCTGACATCTTTGAGGACAGAAGT
CATGGAAATGAGGGTACCTTTTCACAACGAAAGTCCTATATTAAACATAT
GGGTGTCAAAGAGTCGCTATACCATTACATGAATGCGGACATGGTCATCG
CCACTGGATCCTCGTTTCCATTGGTTGCAGTTACGGTATCGTCTAAGGTA
CGTGCACGAAGATCTTGCTAATTCTGGTTCTCTAGTCGTTTCCCAATCTT
ACACATATTTCTACTGTTTTCAGCCCGTAGTGCTATTCACCAAATCAAAA
GAAGGGGGCTTTTATCCCTCCCAGATGCGAGGAGATTATGCAATGATTGG
AGATGACGGGGCGATCACATCTCCTACGATTGCAGAATTGTCGGCACAAG
CCCTGATGCGGTTCCTAGAAGTGCACGAAAAAAGAGTGCCTTATGAGTAA
AATTTTCATTTTAAAGAATGAGTAACGTACGTCACTGTTGTGTTGAA
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protein sequence of NO30G00120.1

>NO30G00120.1-protein ID=NO30G00120.1-protein|Name=NO30G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MDILSDRKPRPRSTQLLLSLWQIIGIFTCLITLVGISDIFQTQTLLAQKN
LQMIQLLGVTNVKKLSSSPMPAAFGNQLPTCDFHMGDIDPACPRFVNIRF
RWLERAGLGDRFFQLLVGLTYALHLNAFLVNVDSEMSTNSTHGPYDWVPN
FFKINYVNSNITMDAIKDRYSNLTVVKQVEEYGRSYEERIQALGSHCNTV
IQIDNDDCDGGPECYFSHNPKIYEHMHNIMACWFLHTDRSNLPALIFDSG
WYNVAIHLRVGDVVLFDGDRGKDFFTKLKSQLDKVLIFSPVHYFFFVEAP
YDELVNEPAVPPTGFAFLADIFEDRSHGNEGTFSQRKSYIKHMGVKESLY
HYMNADMVIATGSSFPLVAVTVSSKVRARRSC*
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mRNA from alignment at chr30:59860..61904+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00120.1 ID=NO30G00120.1|Name=NO30G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2045bp|location=Sequence derived from alignment at chr30:59860..61904+ (Nannochloropsis oceanica)
CAGACCAAAATTGCAGGAGAAAATGGACATTCTAAGTGACCGTAAGCCAA
GGCCCAGGTCAACTCAGCTTTTGCTGTCCCTATGGCAAATCATTGGTATA
TTCACATGCCTAATCACTTTGGTAGGCATATCGGATATCTTTCAAGTAAG
TGGAATGCATAACAGAGTGACAACTAAGACTCACCAAACACTCATGCTAT
TTTGTGCCATCTTCTTCTCGGAATGACAGACGCAGACACTGCTTGCCCAG
AAAAATCTGCAAATGATCCAGCTGCTGGTAAGCCCTACGTGGTGCATATG
ATTGTCACCATCATAATGATTACATTATTATTCAAATCTCTTCTCCTTAG
GGAGTGACGAATGTAAAAAAATTATCGTCCTCTCCGATGCCCGCAGCATT
CGGTAACCAGCTGCCCACGTGCGACTTTCACATGGGTGATATCGATCCAG
CATGTCCGCGATTCGTCAACATTCGATTTCGTACGTGCTATTTCATCTAT
GCAGTCAAGTTCATTTTTGCTAATGCACGCCATTGTATCGTTTATTTACC
TTATCAATGAGACAGGATGGTTAGAGCGGGCAGGGCTGGGAGACCGTTTC
TTCCAGCTATTGGTCGGCCTAACATATGCACTTCATCTCAATGGTACGAA
AAAATATTACGTTTGTTGCCCGCATAAGCAAGATATGTTGTAGAAGGCTA
ATTTCTTCCCTCAAAACCCACTTCACAGCTTTCCTAGTGAATGTGGACTC
AGAAATGAGTACCAACTCGACGCACGGCCCGTACGACTGGGTACCCAATT
TCTTCAAAATAAATTATGTGAACTCGAACATAACGATGGACGCCATAAAA
GATCGCTACAGCAATTTGACAGTTGTGAAGCAAGTGGAGGAGGTAACATC
AGAAGCATGAAATTTCTGCGCCCTAAACAATGTGTATTTATATATATAAT
GTATATGATTATGATCCTACCCCTAAACAAGTACGGCAGAAGCTATGAGG
AAAGAATACAAGCTCTCGGGTCGCATTGCAATACTGTCATTCAAATTGAC
AATGACGTGAGTAATGATGAGGAGACAAAGGACATGGGCTATAAAATAAA
CAAATACTTACTTACTTCACGTACAAATCGTATTTTTGATTTGTGAAAGG
ATTGCGATGGAGGACCGGAATGTTATTTCTCGCACAACCCGAAAATTTAT
GAGCACATGCATAACATTATGGCCTGCTGGTTTTTGCACACTGACCGGTC
TAATCTACCTGCACTCATCTTTGATTCGGGTTGGTATAATGTCGCTATTC
ATGTAAGTCATGACACAATATGTTTATGACAGCAGTTCCCCCCGATTTCC
CGCCTAATTAAAATTGTTATCAATTCCATTTTATATTCTAGCTGCGCGTT
GGTGATGTGGTGCTGTTTGATGGCGACCGAGGCAAAGACTTCTTTACGAA
GCTCAAAAGCCAGCTCGACAAAGTGCTGATCTTCTCTCCGGTCCATTACT
TTTTCTTTGTGGAAGCGCCTTACGATGAATTAGTCAATGAGCCTGCAGTC
CCCCCTACTGGATTCGCCTTTCTGGCTGACATCTTTGAGGACAGAAGTCA
TGGAAATGAGGGTACCTTTTCACAACGAAAGTCCTATATTAAACATATGG
GTGTCAAAGAGTCGCTATACCATTACATGAATGCGGACATGGTCATCGCC
ACTGGATCCTCGTTTCCATTGGTTGCAGTTACGGTATCGTCTAAGGTACG
TGCACGAAGATCTTGCTAATTCTGGTTCTCTAGTCGTTTCCCAATCTTAC
ACATATTTCTACTGTTTTCAGCCCGTAGTGCTATTCACCAAATCAAAAGA
AGGGGGCTTTTATCCCTCCCAGATGCGAGGAGATTATGCAATGATTGGAG
ATGACGGGGCGATCACATCTCCTACGATTGCAGAATTGTCGGCACAAGCC
CTGATGCGGTTCCTAGAAGTGCACGAAAAAAGAGTGCCTTATGAGTAAAA
TTTTCATTTTAAAGAATGAGTAACGTACGTCACTGTTGTGTTGAA
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Coding sequence (CDS) from alignment at chr30:59860..61904+

>NO30G00120.1 ID=NO30G00120.1|Name=NO30G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at chr30:59860..61904+ (Nannochloropsis oceanica)
ATGGACATTCTAAGTGACCGTAAGCCAAGGCCCAGGTCAACTCAGCTTTT
GCTGTCCCTATGGCAAATCATTGGTATATTCACATGCCTAATCACTTTGG
TAGGCATATCGGATATCTTTCAAACGCAGACACTGCTTGCCCAGAAAAAT
CTGCAAATGATCCAGCTGCTGGGAGTGACGAATGTAAAAAAATTATCGTC
CTCTCCGATGCCCGCAGCATTCGGTAACCAGCTGCCCACGTGCGACTTTC
ACATGGGTGATATCGATCCAGCATGTCCGCGATTCGTCAACATTCGATTT
CGATGGTTAGAGCGGGCAGGGCTGGGAGACCGTTTCTTCCAGCTATTGGT
CGGCCTAACATATGCACTTCATCTCAATGCTTTCCTAGTGAATGTGGACT
CAGAAATGAGTACCAACTCGACGCACGGCCCGTACGACTGGGTACCCAAT
TTCTTCAAAATAAATTATGTGAACTCGAACATAACGATGGACGCCATAAA
AGATCGCTACAGCAATTTGACAGTTGTGAAGCAAGTGGAGGAGTACGGCA
GAAGCTATGAGGAAAGAATACAAGCTCTCGGGTCGCATTGCAATACTGTC
ATTCAAATTGACAATGACGATTGCGATGGAGGACCGGAATGTTATTTCTC
GCACAACCCGAAAATTTATGAGCACATGCATAACATTATGGCCTGCTGGT
TTTTGCACACTGACCGGTCTAATCTACCTGCACTCATCTTTGATTCGGGT
TGGTATAATGTCGCTATTCATCTGCGCGTTGGTGATGTGGTGCTGTTTGA
TGGCGACCGAGGCAAAGACTTCTTTACGAAGCTCAAAAGCCAGCTCGACA
AAGTGCTGATCTTCTCTCCGGTCCATTACTTTTTCTTTGTGGAAGCGCCT
TACGATGAATTAGTCAATGAGCCTGCAGTCCCCCCTACTGGATTCGCCTT
TCTGGCTGACATCTTTGAGGACAGAAGTCATGGAAATGAGGGTACCTTTT
CACAACGAAAGTCCTATATTAAACATATGGGTGTCAAAGAGTCGCTATAC
CATTACATGAATGCGGACATGGTCATCGCCACTGGATCCTCGTTTCCATT
GGTTGCAGTTACGGTATCGTCTAAGGTACGTGCACGAAGATCTTGCTAA
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Synonyms
Publications