NO30G00070, NO30G00070 (gene) Nannochloropsis oceanica

Overview
NameNO30G00070
Unique NameNO30G00070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1285
Alignment locationchr30:29559..30843 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:29559..30843 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO30G00070 vs. NCBI_GenBank
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 200.3 bits (508), Expect = 7.900e-48
Identity = 100/184 (54.35%), Postives = 136/184 (73.91%), Query Frame = 0 
Query:    1 MHSFVTSRVTRLLATVVALCFMVTCGH--IIVEDNFVDDTARKSLLAQLPAQV-RFRHTLELPGQLYERLVTVLNPIDAARTTAPTFVPASGKWDAVAAHKDSFGDKSLVGGQVGLVYLEGDGHILFQHEVTGKKTVVDVKPGRFLSWDNEIYTHTLIPGNMPRRLLGPMAFRGGGMQCIGTAP 182
            M  FV+SR    +AT V LC   +  H  I+VEDNF+D+T R++LLAQLP+++ RF+HT+++PG +Y+RL++VL+P ++    +    PA G+   VAAHKD+F D SL   QVGLVYLEGDG +  +++VTG++T++DVKPGRFLSWDN  YTH L+ G+MPRR+LGPMAFR GG Q IG  P
Sbjct:    1 MPLFVSSRYLLSIATAV-LCLTSSFSHAKIVVEDNFIDETTREALLAQLPSEMHRFKHTVDVPGNVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGDDP 183
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BLAST of NO30G00070 vs. NCBI_GenBank
Match: EWM22729.1 (hypothetical protein Naga_100561g2 [Nannochloropsis gaditana] >EWM22730.1 hypothetical protein Naga_100561g2 [Nannochloropsis gaditana])

HSP 1 Score: 196.4 bits (498), Expect = 1.100e-46
Identity = 99/181 (54.70%), Postives = 134/181 (74.03%), Query Frame = 0 
Query:    1 MHSFVTSRVTRLLATVVALCF--MVTCGHIIVEDNFVDDTARKSLLAQLPAQV-RFRHTLELPGQLYERLVTVLNPIDAARTTAPTFVPASGKWDAVAAHKDSFGDKSLVGGQVGLVYLEGDGHILFQHEVTGKKTVVDVKPGRFLSWDNEIYTHTLIPGNMPRRLLGPMAFRGGGMQCIG 179
            M  FV+SR    +AT  ALC     +   I+VEDNF+D+T R +LLAQLP+++ RF+HT++LPG++Y+RL++VL+P ++    +    PA G+   VAAHKD+F D SL   QVGLVYLEGDG +  +++VTG++T++DVKPGRFLSWDN  YTH L+ G+MPRR+LGPMAFR GG Q IG
Sbjct:    1 MPLFVSSRYLLSIAT-AALCLTSSFSFAKIVVEDNFIDETTRDALLAQLPSEMHRFKHTVDLPGKVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIG 180
The following BLAST results are available for this feature:
BLAST of NO30G00070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22739.17.900e-4854.35hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
EWM22729.11.100e-4654.70hypothetical protein Naga_100561g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR074ncniR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00070.1NO30G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610750gene_10493Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00070.1NO30G00070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00070 ID=NO30G00070|Name=NO30G00070|organism=Nannochloropsis oceanica|type=gene|length=1285bp
ATTGTAAACTCCTTGCAAATTGGTCACCTTCTTATTTTCTGACAACAATT
GCACACCAAAGTTTTGTTGTTACGGTTCCCTTCGGACGCCGTTTCTAAGA
CTCTTTTTGGCAAATGCTTGACAATTTCCGCAGAAACGACAGACGACTGC
AAACAAAGCATTCCGCTCGGCTCCAATTCATGCAAAGTCATTCGCCAGAA
CTAATTTTGAGACATGCTACATATTCAGCACCGCAGTTCTCGTTCGCTTG
GGGATCTCCGCACCGACCATGCATTCGTTCGTCACTTCCCGCGTGACCCG
GCTGCTGGCCACCGTGGTCGCCCTATGTTTCATGGTGACCTGTGGGCATA
TAATAGTGGAAGACAATTTTGTCGACGACACCGCGCGCAAGAGCCTCCTT
GCCCAGCTTCCGGCTCAAGTCCGGTTTAGGCACACACTGGAGCTGCCCGG
TCAGCTCTATGAGCGGCTTGTCACTGTCCTTAACCCCATCGACGCGGCCA
GGACAACTGCTCCGACGTTCGTCCCGGCCAGTGGAAAATGGGATGCCGTG
GCTGCTCATAAAGATAGCTTTGGCGACAAGTCTTTGGTCGGAGGGCAGGT
GGGCTTGGTCTACCTGGAAGGGGATGGGCACATACTCTTCCAGCATGAGG
TGACGGGAAAGAAGACGGTGGTGGACGTGAAGCCTGGACGATTTTTGTCG
TGGGACAATGAGATCTATACGCATACATTGATTCCTGGTAACATGCCCCG
CCGCCTTTTGGGCCCCATGGCCTTTCGCGGTGGAGGAATGCAGTGCATTG
GTACCGCCCCCCCTGAAAGTCAGACGAAACGGGTGTATTATATGATTGTG
AAGAAAGATGATCTCACGAAAACTTTCCTTTTTGATAGTTTAGTGCCGCA
GCTCGAGGATTGGTGCCACAAAATCACTCTCCATGTTACGATTGGAATTG
TGAGTGCAAACTGCACAACAGCGTTAATTGAATCCAGCAGTAAAAGCAAA
GATTCAAACGCCATTGACATCCTTAATGGGCTGCCAGAAGTAGTCACCCT
TATATCTGGTCTGCCAGATCCAACAATGTCAGAAGCTGTTGTATGAAATT
TTAATTCTAGCGTGTGAAAGGCGATTCAAGATTTACGTCCAGTCGCCACT
TCTCATTCGAGAACGAGGGCTACTCCGCTGCCCATCCTTTCTCGCCAATT
TGCTCTGTATGGGCTGCTTTAGAGCCATTTCTCCCTCCACACCGATGTAT
TCGGCTATAATGAGTAAAGAATATCTACATTCGTC
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protein sequence of NO30G00070.1

>NO30G00070.1-protein ID=NO30G00070.1-protein|Name=NO30G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MHSFVTSRVTRLLATVVALCFMVTCGHIIVEDNFVDDTARKSLLAQLPAQ
VRFRHTLELPGQLYERLVTVLNPIDAARTTAPTFVPASGKWDAVAAHKDS
FGDKSLVGGQVGLVYLEGDGHILFQHEVTGKKTVVDVKPGRFLSWDNEIY
THTLIPGNMPRRLLGPMAFRGGGMQCIGTAPPESQTKRVYYMIVKKDDLT
KTFLFDSLVPQLEDWCHKITLHVTIGIVSANCTTALIESSSKSKDSNAID
ILNGLPEVVTLISGLPDPTMSEAVV*
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Synonyms
Publications