NO30G00070.1, NO30G00070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00070.1
Unique NameNO30G00070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1285
Alignment locationchr30:29559..30843 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:29559..30843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO30G00070.1 vs.
Match: EWM22739.1 (hypothetical protein Naga_100209g9 [Nannochloropsis gaditana])

HSP 1 Score: 200.3 bits (508), Expect = 7.900e-48
Identity = 100/184 (54.35%), Postives = 136/184 (73.91%), Query Frame = 0 
Query:    1 MHSFVTSRVTRLLATVVALCFMVTCGH--IIVEDNFVDDTARKSLLAQLPAQV-RFRHTLELPGQLYERLVTVLNPIDAARTTAPTFVPASGKWDAVAAHKDSFGDKSLVGGQVGLVYLEGDGHILFQHEVTGKKTVVDVKPGRFLSWDNEIYTHTLIPGNMPRRLLGPMAFRGGGMQCIGTAP 182
            M  FV+SR    +AT V LC   +  H  I+VEDNF+D+T R++LLAQLP+++ RF+HT+++PG +Y+RL++VL+P ++    +    PA G+   VAAHKD+F D SL   QVGLVYLEGDG +  +++VTG++T++DVKPGRFLSWDN  YTH L+ G+MPRR+LGPMAFR GG Q IG  P
Sbjct:    1 MPLFVSSRYLLSIATAV-LCLTSSFSHAKIVVEDNFIDETTREALLAQLPSEMHRFKHTVDVPGNVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHKDTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNRHYTHQLLAGSMPRRILGPMAFRDGGFQSIGDDP 183
The following BLAST results are available for this feature:
BLAST of NO30G00070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22739.17.900e-4854.35hypothetical protein Naga_100209g9 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00070NO30G00070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00070.1NO30G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00070.1.cds1NO30G00070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00070.1 ID=NO30G00070.1|Name=NO30G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1285bp
ATTGTAAACTCCTTGCAAATTGGTCACCTTCTTATTTTCTGACAACAATT
GCACACCAAAGTTTTGTTGTTACGGTTCCCTTCGGACGCCGTTTCTAAGA
CTCTTTTTGGCAAATGCTTGACAATTTCCGCAGAAACGACAGACGACTGC
AAACAAAGCATTCCGCTCGGCTCCAATTCATGCAAAGTCATTCGCCAGAA
CTAATTTTGAGACATGCTACATATTCAGCACCGCAGTTCTCGTTCGCTTG
GGGATCTCCGCACCGACCATGCATTCGTTCGTCACTTCCCGCGTGACCCG
GCTGCTGGCCACCGTGGTCGCCCTATGTTTCATGGTGACCTGTGGGCATA
TAATAGTGGAAGACAATTTTGTCGACGACACCGCGCGCAAGAGCCTCCTT
GCCCAGCTTCCGGCTCAAGTCCGGTTTAGGCACACACTGGAGCTGCCCGG
TCAGCTCTATGAGCGGCTTGTCACTGTCCTTAACCCCATCGACGCGGCCA
GGACAACTGCTCCGACGTTCGTCCCGGCCAGTGGAAAATGGGATGCCGTG
GCTGCTCATAAAGATAGCTTTGGCGACAAGTCTTTGGTCGGAGGGCAGGT
GGGCTTGGTCTACCTGGAAGGGGATGGGCACATACTCTTCCAGCATGAGG
TGACGGGAAAGAAGACGGTGGTGGACGTGAAGCCTGGACGATTTTTGTCG
TGGGACAATGAGATCTATACGCATACATTGATTCCTGGTAACATGCCCCG
CCGCCTTTTGGGCCCCATGGCCTTTCGCGGTGGAGGAATGCAGTGCATTG
GTACCGCCCCCCCTGAAAGTCAGACGAAACGGGTGTATTATATGATTGTG
AAGAAAGATGATCTCACGAAAACTTTCCTTTTTGATAGTTTAGTGCCGCA
GCTCGAGGATTGGTGCCACAAAATCACTCTCCATGTTACGATTGGAATTG
TGAGTGCAAACTGCACAACAGCGTTAATTGAATCCAGCAGTAAAAGCAAA
GATTCAAACGCCATTGACATCCTTAATGGGCTGCCAGAAGTAGTCACCCT
TATATCTGGTCTGCCAGATCCAACAATGTCAGAAGCTGTTGTATGAAATT
TTAATTCTAGCGTGTGAAAGGCGATTCAAGATTTACGTCCAGTCGCCACT
TCTCATTCGAGAACGAGGGCTACTCCGCTGCCCATCCTTTCTCGCCAATT
TGCTCTGTATGGGCTGCTTTAGAGCCATTTCTCCCTCCACACCGATGTAT
TCGGCTATAATGAGTAAAGAATATCTACATTCGTC
back to top

protein sequence of NO30G00070.1

>NO30G00070.1-protein ID=NO30G00070.1-protein|Name=NO30G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MHSFVTSRVTRLLATVVALCFMVTCGHIIVEDNFVDDTARKSLLAQLPAQ
VRFRHTLELPGQLYERLVTVLNPIDAARTTAPTFVPASGKWDAVAAHKDS
FGDKSLVGGQVGLVYLEGDGHILFQHEVTGKKTVVDVKPGRFLSWDNEIY
THTLIPGNMPRRLLGPMAFRGGGMQCIGTAPPESQTKRVYYMIVKKDDLT
KTFLFDSLVPQLEDWCHKITLHVTIGIVSANCTTALIESSSKSKDSNAID
ILNGLPEVVTLISGLPDPTMSEAVV*
back to top

mRNA from alignment at chr30:29559..30843+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00070.1 ID=NO30G00070.1|Name=NO30G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1285bp|location=Sequence derived from alignment at chr30:29559..30843+ (Nannochloropsis oceanica)
ATTGTAAACTCCTTGCAAATTGGTCACCTTCTTATTTTCTGACAACAATT
GCACACCAAAGTTTTGTTGTTACGGTTCCCTTCGGACGCCGTTTCTAAGA
CTCTTTTTGGCAAATGCTTGACAATTTCCGCAGAAACGACAGACGACTGC
AAACAAAGCATTCCGCTCGGCTCCAATTCATGCAAAGTCATTCGCCAGAA
CTAATTTTGAGACATGCTACATATTCAGCACCGCAGTTCTCGTTCGCTTG
GGGATCTCCGCACCGACCATGCATTCGTTCGTCACTTCCCGCGTGACCCG
GCTGCTGGCCACCGTGGTCGCCCTATGTTTCATGGTGACCTGTGGGCATA
TAATAGTGGAAGACAATTTTGTCGACGACACCGCGCGCAAGAGCCTCCTT
GCCCAGCTTCCGGCTCAAGTCCGGTTTAGGCACACACTGGAGCTGCCCGG
TCAGCTCTATGAGCGGCTTGTCACTGTCCTTAACCCCATCGACGCGGCCA
GGACAACTGCTCCGACGTTCGTCCCGGCCAGTGGAAAATGGGATGCCGTG
GCTGCTCATAAAGATAGCTTTGGCGACAAGTCTTTGGTCGGAGGGCAGGT
GGGCTTGGTCTACCTGGAAGGGGATGGGCACATACTCTTCCAGCATGAGG
TGACGGGAAAGAAGACGGTGGTGGACGTGAAGCCTGGACGATTTTTGTCG
TGGGACAATGAGATCTATACGCATACATTGATTCCTGGTAACATGCCCCG
CCGCCTTTTGGGCCCCATGGCCTTTCGCGGTGGAGGAATGCAGTGCATTG
GTACCGCCCCCCCTGAAAGTCAGACGAAACGGGTGTATTATATGATTGTG
AAGAAAGATGATCTCACGAAAACTTTCCTTTTTGATAGTTTAGTGCCGCA
GCTCGAGGATTGGTGCCACAAAATCACTCTCCATGTTACGATTGGAATTG
TGAGTGCAAACTGCACAACAGCGTTAATTGAATCCAGCAGTAAAAGCAAA
GATTCAAACGCCATTGACATCCTTAATGGGCTGCCAGAAGTAGTCACCCT
TATATCTGGTCTGCCAGATCCAACAATGTCAGAAGCTGTTGTATGAAATT
TTAATTCTAGCGTGTGAAAGGCGATTCAAGATTTACGTCCAGTCGCCACT
TCTCATTCGAGAACGAGGGCTACTCCGCTGCCCATCCTTTCTCGCCAATT
TGCTCTGTATGGGCTGCTTTAGAGCCATTTCTCCCTCCACACCGATGTAT
TCGGCTATAATGAGTAAAGAATATCTACATTCGTC
back to top

Coding sequence (CDS) from alignment at chr30:29559..30843+

>NO30G00070.1 ID=NO30G00070.1|Name=NO30G00070.1|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at chr30:29559..30843+ (Nannochloropsis oceanica)
ATGCATTCGTTCGTCACTTCCCGCGTGACCCGGCTGCTGGCCACCGTGGT
CGCCCTATGTTTCATGGTGACCTGTGGGCATATAATAGTGGAAGACAATT
TTGTCGACGACACCGCGCGCAAGAGCCTCCTTGCCCAGCTTCCGGCTCAA
GTCCGGTTTAGGCACACACTGGAGCTGCCCGGTCAGCTCTATGAGCGGCT
TGTCACTGTCCTTAACCCCATCGACGCGGCCAGGACAACTGCTCCGACGT
TCGTCCCGGCCAGTGGAAAATGGGATGCCGTGGCTGCTCATAAAGATAGC
TTTGGCGACAAGTCTTTGGTCGGAGGGCAGGTGGGCTTGGTCTACCTGGA
AGGGGATGGGCACATACTCTTCCAGCATGAGGTGACGGGAAAGAAGACGG
TGGTGGACGTGAAGCCTGGACGATTTTTGTCGTGGGACAATGAGATCTAT
ACGCATACATTGATTCCTGGTAACATGCCCCGCCGCCTTTTGGGCCCCAT
GGCCTTTCGCGGTGGAGGAATGCAGTGCATTGGTACCGCCCCCCCTGAAA
GTCAGACGAAACGGGTGTATTATATGATTGTGAAGAAAGATGATCTCACG
AAAACTTTCCTTTTTGATAGTTTAGTGCCGCAGCTCGAGGATTGGTGCCA
CAAAATCACTCTCCATGTTACGATTGGAATTGTGAGTGCAAACTGCACAA
CAGCGTTAATTGAATCCAGCAGTAAAAGCAAAGATTCAAACGCCATTGAC
ATCCTTAATGGGCTGCCAGAAGTAGTCACCCTTATATCTGGTCTGCCAGA
TCCAACAATGTCAGAAGCTGTTGTATGA
back to top
Synonyms
Publications