NO30G00030, NO30G00030 (gene) Nannochloropsis oceanica

Overview
NameNO30G00030
Unique NameNO30G00030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1946
Alignment locationchr30:9452..11397 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:9452..11397 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO30G00030 vs. NCBI_GenBank
Match: EWM20221.1 (hypothetical protein Naga_100716g2 [Nannochloropsis gaditana])

HSP 1 Score: 369.0 bits (946), Expect = 1.900e-98
Identity = 178/383 (46.48%), Postives = 246/383 (64.23%), Query Frame = 0 
Query:   29 GWLVVNAYNWGVMSAMRDYQSDILRALAMNYTVVHQGVYNLCPSNPQQFLDCFWEDLNACQSEFPSLLSVPRINQPQEITTSAVFHEQFPHWLWNLLVDKGAIHLQHGLTGATLT--EEDIVDEDQYLQLKLSVLRAILSKRIFKPRKHIQRKTLAMLKSWRSNGSYANTSEKGVVIHIRRTDKMSDLGAHWHYIDFESTAHLGRLVQTMENMINSTFQHFFVMSDDPIMQKRGTKELASFFQANPSN--LVSTELCDLLGANRLEYDGHESLAAAHRHQLYDIVVAEMYAAIEVSQYIIGSGSCAVSQFMALNIGARHRVEPGLVALWEEDLIIKECRLLLHQRMSLHKPCNASSYLERSSSKPLFQTFLDGQWNDKTCLQF 408
            GW+V   Y WG++S  RDYQSDILRA+  N T+VH G Y  CP+NP+++L+CFWED N+CQ+ + +  +VP + Q  + +   +  ++FPHWLW L+ D   +H+    TG  L+  E+  +D D +LQ KLSV+RAI++K +FKPR+ I   +   +++W  N +Y  +S  G+++HIRRTDK+ DLG HW +IDF ST H+G  +Q ME+ INS+F ++ V+SDDP MQ++ T EL  +FQ       L ST LC  LG+N   Y GHESL    RH LY ++++++YAAI+VS YIIGSGSC VSQF+A NIGA+H  EP   A WEEDLI+KEC  LL Q               R S  P+ +  L  +W  KTC  F
Sbjct:   99 GWMVTKPYWWGLVSVARDYQSDILRAMTRNLTLVHDGPYMFCPNNPERYLNCFWEDFNSCQNFWKTQPNVPIVEQTWQGSIKPLSSDEFPHWLWRLMRD--YMHIYDDSTGRILSIEEDAFLDTDMFLQTKLSVMRAIMTKTVFKPREFIIESSKKSIETWGENENYHGSSRLGLLVHIRRTDKLEDLGPHWRHIDFNSTRHMGPYIQAMESAINSSFDNYVVLSDDPHMQEKATFELTPYFQNGNGTQALYSTSLCHFLGSNDFNYTGHESLDYNARHDLYVLLLSDIYAAIQVSDYIIGSGSCGVSQFIAWNIGAKHYFEPSPAAFWEEDLIVKECHWLLDQ--------------HRQSKNPITKAMLHREWGRKTCAAF 465
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BLAST of NO30G00030 vs. NCBI_GenBank
Match: EWM20238.1 (hypothetical protein Naga_100470g2 [Nannochloropsis gaditana])

HSP 1 Score: 365.2 bits (936), Expect = 2.800e-97
Identity = 171/381 (44.88%), Postives = 244/381 (64.04%), Query Frame = 0 
Query:   29 GWLVVNAYNWGVMSAMRDYQSDILRALAMNYTVVHQGVYNLCPSNPQQFLDCFWEDLNACQSEFPSLLSVPRINQPQEITTSAVFHEQFPHWLWNLLVDKGAIHLQHGLTGATLTEEDIVDEDQYLQLKLSVLRAILSKRIFKPRKHIQRKTLAMLKSWRSNGSYANTSEKGVVIHIRRTDKMSDLGAHWHYIDFESTAHLGRLVQTMENMINSTFQHFFVMSDDPIMQKRGTKELASFFQANPSN--LVSTELCDLLGANRLEYDGHESLAAAHRHQLYDIVVAEMYAAIEVSQYIIGSGSCAVSQFMALNIGARHRVEPGLVALWEEDLIIKECRLLLHQRMSLHKPCNASSYLERSSSKPLFQTFLDGQWNDKTCLQF 408
            GW+V   Y WG++S  RDYQSDILRA+  N T+VH G Y  CP+NP+++L+CFWED N+CQ+ + +  +VP + Q  + +   +  ++FPHWLW L+ D   I+        ++ E+  +D D +LQ KLSV+RAI++K +FKPR+ I + +   +++W  N +Y  +S  G++IH+RRTDK+ DLG HW +IDF ST H+G  +Q ME+ IN++F ++ V+SDDP MQ++ T EL  +FQ       L S+ LC  LG+N   Y GHESL    RH LY ++++++YAAI+VS YIIGSGSC VSQF+A N+GA+H+ EP L A WEEDLI+KEC  L  Q               R S  P+ +  L  +W  K C  F
Sbjct:  149 GWMVTKPYWWGLVSVARDYQSDILRAMTKNLTLVHDGPYMFCPNNPERYLNCFWEDFNSCQNVWKTQPNVPIVEQTWQDSIKPLSSDEFPHWLWRLMRDYMHIYDDSTERILSIEEDAFLDTDMFLQTKLSVMRAIMTKTVFKPREFIIQSSKKSIETWGGNKNYDESSRLGLLIHVRRTDKLEDLGPHWRHIDFNSTRHMGPYIQAMESAINASFDNYVVLSDDPHMQEKATFELTPYFQNGNGTQALYSSSLCHFLGSNNFNYTGHESLDYNARHDLYVLLLSDIYAAIQVSDYIIGSGSCGVSQFIAWNLGAKHQFEPSLAAFWEEDLIVKECHWLFDQ--------------HRQSKNPITKAMLHREWGRKKCAAF 515
[Close]
BLAST of NO30G00030 vs. NCBI_GenBank
Match: EWM20242.1 (hypothetical protein Naga_100380g3 [Nannochloropsis gaditana])

HSP 1 Score: 359.4 bits (921), Expect = 1.500e-95
Identity = 169/376 (44.95%), Postives = 242/376 (64.36%), Query Frame = 0 
Query:   29 GWLVVNAYNWGVMSAMRDYQSDILRALAMNYTVVHQGVYNLCPSNPQQFLDCFWEDLNACQSEFPSLLSVPRINQPQEITTSAVFHEQFPHWLWNLLVDKGAIHLQHGLTGATLTEEDIVDEDQYLQLKLSVLRAILSKRIFKPRKHIQRKTLAMLKSWRSNGSYANTSEKGVVIHIRRTDKMSDLGAHWHYIDFESTAHLGRLVQTMENMINSTFQHFFVMSDDPIMQKRGTKELASFFQANPSN--LVSTELCDLLGANRLEYDGHESLAAAHRHQLYDIVVAEMYAAIEVSQYIIGSGSCAVSQFMALNIGARHRVEPGLVALWEEDLIIKECRLLLHQRMSLHKPCNASSYLERSSSKPLFQTFLDGQWNDK 403
            GW+V   Y WG++S  RDYQSDILRA+  N T+VH G Y  CP+NP+++L+CFWED N+CQ+ + +  +VP + Q  + +   +  ++FPHWLW L+ D   I+        ++ E+  +D D +LQ KLSV+RAI++K +FKPR+ I + +   +++W  N +Y  +S  G++IH+RRTDK+ DLG HW +IDF ST H+G  +Q ME+ IN++F ++ V+SDDP MQ++ T EL  +FQ       L S+ LC  LG+N   Y GHESL    RH LY ++++++YAAI+VS YIIGSGSC VSQF+A N+GA+H+ EP L A WEEDLI+KEC  L  Q               R S  P+ +  L  +W  K
Sbjct:  149 GWMVTKPYWWGLVSVARDYQSDILRAMTKNLTLVHDGPYMFCPNNPERYLNCFWEDFNSCQNFWKTQPNVPIVEQTWQDSIKPLSSDEFPHWLWRLMRDYMYIYDDSTERILSIEEDAFLDTDMFLQTKLSVMRAIMTKTVFKPREFIIQSSKKSIETWGGNKNYDGSSRLGLLIHVRRTDKLEDLGPHWRHIDFNSTRHMGPYIQAMESAINASFDNYVVLSDDPHMQEKATFELTPYFQNGNGTQALYSSSLCHFLGSNNFNYTGHESLDYNARHDLYVLLLSDIYAAIQVSDYIIGSGSCGVSQFIAWNLGAKHQFEPSLAAFWEEDLIVKECHWLFDQ--------------HRQSKNPITKAMLHREWGRK 510
The following BLAST results are available for this feature:
BLAST of NO30G00030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM20221.11.900e-9846.48hypothetical protein Naga_100716g2 [Nannochloropsi... [more]
EWM20238.12.800e-9744.88hypothetical protein Naga_100470g2 [Nannochloropsi... [more]
EWM20242.11.500e-9544.95hypothetical protein Naga_100380g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR074ncniR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00030.1NO30G00030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO30G00030.2NO30G00030.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO30G00030.3NO30G00030.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO30G00030.4NO30G00030.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610804gene_10501Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00030.1NO30G00030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO30G00030.2NO30G00030.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO30G00030.3NO30G00030.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO30G00030.4NO30G00030.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00030 ID=NO30G00030|Name=NO30G00030|organism=Nannochloropsis oceanica|type=gene|length=1946bp
ATTCTCTTGTCTTATTGTATCCTTGAATTATTTATTTTCATACACATTGT
ATAAAAATGCAGGATCACATGACGGCATTTCCCAAAAGCGAATGGAAACT
GCGTTTTTATCAATCAATCCTACTGTCGAGCGTATGTATAATGATGCTGG
AAAGTCGCGAAAGGTTAAAAATGGCTGACTTCACAATTTCTGGTATTAAA
AATAATGACCTTCGAAACCCTGCTCGGGGAGATGAAAATTCCGAGGTGGA
ACAGCACGCTTATGGTTTTCGAACGCTGATTGATGAGTATCGTACTCTCT
GGACCGCGGGGTGGAACGCGCGATACGCCAAATACTACCTACCGGTGCCA
CCAAAAGTAACGTGGGCACTGGAGGCTGAGGACATTGTTGAGAGAGAGTA
TCGTCGTTTGCATTTCCCTGCCCACTGCAGCGATGTCAATGgtaagaggg
gttggaacaaaggtatatataataatggaaagaaaatcccatatccatct
gcattcgccccgtatagGGTGGCTGGTTGTCAATGCATACAATTGGGGCG
TTATGTCGGCGATGCGGGACTATCAATCTGATATTCTGCGAGCCTTGGCC
ATGAACTACACAGTAGTGCATCAAGGAGTATACAATTTGTGTCCTTCAAA
TCCGCAGCAATTTTTAGACTGTTTTTGGGAGGACTTGAATGCCTGTCAAT
CTGAGTTTCCTTCCCTTTTAAGCGTTCCCAGAATAAACCAACCCCAGGAA
ATTACCACATCGGCAGTGTTCCATGAACAATTCCCGCATTGGCTGTGGAA
TCTATTGGTTGACAAGGGGGCCATACACCTACAGCATGGACTGACGGGTG
CAACACTGACGGAAGAGGACATTGTGGATGAGGATCAATATCTTCAACTC
AAGCTATCTGTGTTAAGAGCAATTCTTAGCAAAAGAATCTTCAAGCCGAG
GAAGCATATCCAGCGAAAGACTTTGGCGATGCTTAAGTCGTGGAGATCGA
ATGGAAGCTACGCAAATACATCCGAAAAAGGCGTAGTGATTCACATCCGT
CGCACTGATAAGATGAGTGACTTAGGGGCTCATTGGCACTATATCGACTT
TGAGTCCACTGCACACTTAGGGCGCCTAGTTCAGACGATGGAAAATATGA
TCAACAGTACTTTCCAGCATTTTTTTGTCATGTCCGATGACCCCATCATG
CAAAAGCGTGGTACCAAGGAGCTTGCTTCCTTTTTCCAGGCCAATCCTTC
AAATCTTGTTAGTACCGAGCTCTGCGATCTGTTGGGAGCCAATCGGTTGG
AGTACGACGGCCACGAATCGCTTGCGGCAGCTCACCGTCACCAGCTATAT
gtacgtacactagcgttggaccgatgctttgcgtgaccactatctctaat
tttgatttcttgcaatacagGATATTGTTGTCGCAGAAATGTACGCCGCT
ATCGAAGTTTCTCAGTACATCATTGGGTCTGGTTCCTGTGCCGTTAGCCA
GTTCATGGCTCTTAACATTGGGGCAAGACACCGCGTCGGTAGGTCGGATA
AATATTTACTTGCCACTCTTCTCATGTACGTAACTCCACTTTTTCTTCGT
CCTACAGAACCAGGCCTTGTAGCTCTTTGGGAGGAAGACTTAATCATAAA
GGAATGTCGCTTGCTTCTTCATCAGCGAATGAGTTTGCACAAACCGTGTA
ACGCTTCATCGTACTTGGAGCGGTCAAGCAGCAAACCCTTATTTCAAACG
TTCTTAGACGGGCAATGGAATGACAAGACATGCCTCCAATTCTTGCCCCC
CTTGCCAAACTGTTTTGGTGATGCAGGATGAGAGGGAAACATCGACTTAA
ACAATGATATGGCTCAAAACATTGCTTCTACCCACTCCCGCTAAGAGCAT
TAGATAAGATGATTAGATCCAACACATTATTAAAAATGCGGGGCAA
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protein sequence of NO30G00030.1

>NO30G00030.1-protein ID=NO30G00030.1-protein|Name=NO30G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=520bp
MQDHMTAFPKSEWKLRFYQSILLSSVCIMMLESRERLKMADFTISGIKNN
DLRNPARGDENSEVEQHAYGFRTLIDEYRTLWTAGWNARYAKYYLPVPPK
VTWALEAEDIVEREYRRLHFPAHCSDVNGWLVVNAYNWGVMSAMRDYQSD
ILRALAMNYTVVHQGVYNLCPSNPQQFLDCFWEDLNACQSEFPSLLSVPR
INQPQEITTSAVFHEQFPHWLWNLLVDKGAIHLQHGLTGATLTEEDIVDE
DQYLQLKLSVLRAILSKRIFKPRKHIQRKTLAMLKSWRSNGSYANTSEKG
VVIHIRRTDKMSDLGAHWHYIDFESTAHLGRLVQTMENMINSTFQHFFVM
SDDPIMQKRGTKELASFFQANPSNLVSTELCDLLGANRLEYDGHESLAAA
HRHQLYDIVVAEMYAAIEVSQYIIGSGSCAVSQFMALNIGARHRVEPGLV
ALWEEDLIIKECRLLLHQRMSLHKPCNASSYLERSSSKPLFQTFLDGQWN
DKTCLQFLPPLPNCFGDAG*
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protein sequence of NO30G00030.2

>NO30G00030.2-protein ID=NO30G00030.2-protein|Name=NO30G00030.2|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MSMVRGVGTKVYIIMERKSHIHLHSPRIGWLVVNAYNWGVMSAMRDYQSD
ILRALAMNYTVVHQGVYNLCPSNPQQFLDCFWEDLNACQSEFPSLLSVPR
INQPQEITTSAVFHEQFPHWLWNLLVDKGAIHLQHGLTGATLTEEDIVDE
DQYLQLKLSVLRAILSKRIFKPRKHIQRKTLAMLKSWRSNGSYANTSEKG
VVIHIRRTDKMSDLGAHWHYIDFESTAHLGRLVQTMENMINSTFQHFFVM
SDDPIMQKRGTKELASFFQANPSNLVSTELCDLLGANRLEYDGHESLAAA
HRHQLYDIVVAEMYAAIEVSQYIIGSGSCAVSQFMALNIGARHRVEPGLV
ALWEEDLIIKECRLLLHQRMSLHKPCNASSYLERSSSKPLFQTFLDGQWN
DKTCLQFLPPLPNCFGDAG*
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protein sequence of NO30G00030.3

>NO30G00030.3-protein ID=NO30G00030.3-protein|Name=NO30G00030.3|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MQDHMTAFPKSEWKLRFYQSILLSSVCIMMLESRERLKMADFTISGIKNN
DLRNPARGDENSEVEQHAYGFRTLIDEYRTLWTAGWNARYAKYYLPVPPK
VTWALEAEDIVEREYRRLHFPAHCSDVNGWLVVNAYNWGVMSAMRDYQSD
ILRALAMNYTVVHQGVYNLCPSNPQQFLDCFWEDLNACQSEFPSLLSVPR
INQPQEITTSAVFHEQFPHWLWNLLVDKGAIHLQHGLTGATLTEEDIVDE
DQYLQLKLSVLRAILSKRIFKPRKHIQRKTLAMLKSWRSNGSYANTSEKG
VVIHIRRTDKMSDLGAHWHYIDFESTAHLGRLVQTMENMINSTFQHFFVM
SDDPIMQKRGTKELASFFQANPSNLVSTELCDLLGANRLEYDGHESLAAA
HRHQLYDIVVAEMYAAIEVSQYIIGSGSCAVSQFMALNIGARHRVGRSDK
YLLATLLMYVTPLFLRPTEPGLVALWEEDLIIKECRLLLHQRMSLHKPCN
ASSYLERSSSKPLFQTFLDGQWNDKTCLQFLPPLPNCFGDAG*
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protein sequence of NO30G00030.4

>NO30G00030.4-protein ID=NO30G00030.4-protein|Name=NO30G00030.4|organism=Nannochloropsis oceanica|type=polypeptide|length=443bp
MSMVRGVGTKVYIIMERKSHIHLHSPRIGWLVVNAYNWGVMSAMRDYQSD
ILRALAMNYTVVHQGVYNLCPSNPQQFLDCFWEDLNACQSEFPSLLSVPR
INQPQEITTSAVFHEQFPHWLWNLLVDKGAIHLQHGLTGATLTEEDIVDE
DQYLQLKLSVLRAILSKRIFKPRKHIQRKTLAMLKSWRSNGSYANTSEKG
VVIHIRRTDKMSDLGAHWHYIDFESTAHLGRLVQTMENMINSTFQHFFVM
SDDPIMQKRGTKELASFFQANPSNLVSTELCDLLGANRLEYDGHESLAAA
HRHQLYDIVVAEMYAAIEVSQYIIGSGSCAVSQFMALNIGARHRVGRSDK
YLLATLLMYVTPLFLRPTEPGLVALWEEDLIIKECRLLLHQRMSLHKPCN
ASSYLERSSSKPLFQTFLDGQWNDKTCLQFLPPLPNCFGDAG*
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Synonyms
Publications