NO30G00030.4, NO30G00030.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00030.4
Unique NameNO30G00030.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1876
Alignment locationchr30:9452..11397 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:9452..11397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO30G00030.4 vs.
Match: EWM20221.1 (hypothetical protein Naga_100716g2 [Nannochloropsis gaditana])

HSP 1 Score: 355.5 bits (911), Expect = 2.300e-94
Identity = 180/406 (44.33%), Postives = 247/406 (60.84%), Query Frame = 0 
Query:   29 GWLVVNAYNWGVMSAMRDYQSDILRALAMNYTVVHQGVYNLCPSNPQQFLDCFWEDLNACQSEFPSLLSVPRINQPQEITTSAVFHEQFPHWLWNLLVDKGAIHLQHGLTGATLT-EED-IVDEDQYLQLKLSVLRAILSKRIFKPRKHIQRKTLAMLKSWRSNGSYANTSEKGVVIHIRRTDKMSDLGAHWHYIDFESTAHLGRLVQTMENMINSTFQHFFVMSDDPIMQKRGTKELASFFQANPSN--LVSTELCDLLGANRLEYDGHESLAAAHRHQLYDIVVAEMYAAIEVSQYIIGSGSCAVSQFMALNIGARHRVGRSDKYLLATLLMYVTPLFLRPTEPGLVALWEEDLIIKECRLLLHQRMSLHKPCNASSYLERSSSKPLFQTFLDGQWNDKTCLQF 431
            GW+V   Y WG++S  RDYQSDILRA+  N T+VH G Y  CP+NP+++L+CFWED N+CQ+ + +  +VP + Q  + +   +  ++FPHWLW L+ D   +H+    TG  L+ EED  +D D +LQ KLSV+RAI++K +FKPR+ I   +   +++W  N +Y  +S  G+++HIRRTDK+ DLG HW +IDF ST H+G  +Q ME+ INS+F ++ V+SDDP MQ++ T EL  +FQ       L ST LC  LG+N   Y GHESL    RH LY ++++++YAAI+VS YIIGSGSC VSQF+A NIGA+H                         EP   A WEEDLI+KEC  LL Q               R S  P+ +  L  +W  KTC  F
Sbjct:   99 GWMVTKPYWWGLVSVARDYQSDILRAMTRNLTLVHDGPYMFCPNNPERYLNCFWEDFNSCQNFWKTQPNVPIVEQTWQGSIKPLSSDEFPHWLWRLMRDY--MHIYDDSTGRILSIEEDAFLDTDMFLQTKLSVMRAIMTKTVFKPREFIIESSKKSIETWGENENYHGSSRLGLLVHIRRTDKLEDLGPHWRHIDFNSTRHMGPYIQAMESAINSSFDNYVVLSDDPHMQEKATFELTPYFQNGNGTQALYSTSLCHFLGSNDFNYTGHESLDYNARHDLYVLLLSDIYAAIQVSDYIIGSGSCGVSQFIAWNIGAKHYF-----------------------EPSPAAFWEEDLIVKECHWLLDQ--------------HRQSKNPITKAMLHREWGRKTCAAF 465
The following BLAST results are available for this feature:
BLAST of NO30G00030.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20221.12.300e-9444.33hypothetical protein Naga_100716g2 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00030NO30G00030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00030.4NO30G00030.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00030.4.cds1NO30G00030.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00030.4.cds2NO30G00030.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00030.4 ID=NO30G00030.4|Name=NO30G00030.4|organism=Nannochloropsis oceanica|type=mRNA|length=1876bp
ATTCTCTTGTCTTATTGTATCCTTGAATTATTTATTTTCATACACATTGT
ATAAAAATGCAGGATCACATGACGGCATTTCCCAAAAGCGAATGGAAACT
GCGTTTTTATCAATCAATCCTACTGTCGAGCGTATGTATAATGATGCTGG
AAAGTCGCGAAAGGTTAAAAATGGCTGACTTCACAATTTCTGGTATTAAA
AATAATGACCTTCGAAACCCTGCTCGGGGAGATGAAAATTCCGAGGTGGA
ACAGCACGCTTATGGTTTTCGAACGCTGATTGATGAGTATCGTACTCTCT
GGACCGCGGGGTGGAACGCGCGATACGCCAAATACTACCTACCGGTGCCA
CCAAAAGTAACGTGGGCACTGGAGGCTGAGGACATTGTTGAGAGAGAGTA
TCGTCGTTTGCATTTCCCTGCCCACTGCAGCGATGTCAATGGTAAGAGGG
GTTGGAACAAAGGTATATATAATAATGGAAAGAAAATCCCATATCCATCT
GCATTCGCCCCGTATAGGGTGGCTGGTTGTCAATGCATACAATTGGGGCG
TTATGTCGGCGATGCGGGACTATCAATCTGATATTCTGCGAGCCTTGGCC
ATGAACTACACAGTAGTGCATCAAGGAGTATACAATTTGTGTCCTTCAAA
TCCGCAGCAATTTTTAGACTGTTTTTGGGAGGACTTGAATGCCTGTCAAT
CTGAGTTTCCTTCCCTTTTAAGCGTTCCCAGAATAAACCAACCCCAGGAA
ATTACCACATCGGCAGTGTTCCATGAACAATTCCCGCATTGGCTGTGGAA
TCTATTGGTTGACAAGGGGGCCATACACCTACAGCATGGACTGACGGGTG
CAACACTGACGGAAGAGGACATTGTGGATGAGGATCAATATCTTCAACTC
AAGCTATCTGTGTTAAGAGCAATTCTTAGCAAAAGAATCTTCAAGCCGAG
GAAGCATATCCAGCGAAAGACTTTGGCGATGCTTAAGTCGTGGAGATCGA
ATGGAAGCTACGCAAATACATCCGAAAAAGGCGTAGTGATTCACATCCGT
CGCACTGATAAGATGAGTGACTTAGGGGCTCATTGGCACTATATCGACTT
TGAGTCCACTGCACACTTAGGGCGCCTAGTTCAGACGATGGAAAATATGA
TCAACAGTACTTTCCAGCATTTTTTTGTCATGTCCGATGACCCCATCATG
CAAAAGCGTGGTACCAAGGAGCTTGCTTCCTTTTTCCAGGCCAATCCTTC
AAATCTTGTTAGTACCGAGCTCTGCGATCTGTTGGGAGCCAATCGGTTGG
AGTACGACGGCCACGAATCGCTTGCGGCAGCTCACCGTCACCAGCTATAT
GATATTGTTGTCGCAGAAATGTACGCCGCTATCGAAGTTTCTCAGTACAT
CATTGGGTCTGGTTCCTGTGCCGTTAGCCAGTTCATGGCTCTTAACATTG
GGGCAAGACACCGCGTCGGTAGGTCGGATAAATATTTACTTGCCACTCTT
CTCATGTACGTAACTCCACTTTTTCTTCGTCCTACAGAACCAGGCCTTGT
AGCTCTTTGGGAGGAAGACTTAATCATAAAGGAATGTCGCTTGCTTCTTC
ATCAGCGAATGAGTTTGCACAAACCGTGTAACGCTTCATCGTACTTGGAG
CGGTCAAGCAGCAAACCCTTATTTCAAACGTTCTTAGACGGGCAATGGAA
TGACAAGACATGCCTCCAATTCTTGCCCCCCTTGCCAAACTGTTTTGGTG
ATGCAGGATGAGAGGGAAACATCGACTTAAACAATGATATGGCTCAAAAC
ATTGCTTCTACCCACTCCCGCTAAGAGCATTAGATAAGATGATTAGATCC
AACACATTATTAAAAATGCGGGGCAA
back to top

protein sequence of NO30G00030.4

>NO30G00030.4-protein ID=NO30G00030.4-protein|Name=NO30G00030.4|organism=Nannochloropsis oceanica|type=polypeptide|length=443bp
MSMVRGVGTKVYIIMERKSHIHLHSPRIGWLVVNAYNWGVMSAMRDYQSD
ILRALAMNYTVVHQGVYNLCPSNPQQFLDCFWEDLNACQSEFPSLLSVPR
INQPQEITTSAVFHEQFPHWLWNLLVDKGAIHLQHGLTGATLTEEDIVDE
DQYLQLKLSVLRAILSKRIFKPRKHIQRKTLAMLKSWRSNGSYANTSEKG
VVIHIRRTDKMSDLGAHWHYIDFESTAHLGRLVQTMENMINSTFQHFFVM
SDDPIMQKRGTKELASFFQANPSNLVSTELCDLLGANRLEYDGHESLAAA
HRHQLYDIVVAEMYAAIEVSQYIIGSGSCAVSQFMALNIGARHRVGRSDK
YLLATLLMYVTPLFLRPTEPGLVALWEEDLIIKECRLLLHQRMSLHKPCN
ASSYLERSSSKPLFQTFLDGQWNDKTCLQFLPPLPNCFGDAG*
back to top

mRNA from alignment at chr30:9452..11397+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00030.4 ID=NO30G00030.4|Name=NO30G00030.4|organism=Nannochloropsis oceanica|type=mRNA|length=1946bp|location=Sequence derived from alignment at chr30:9452..11397+ (Nannochloropsis oceanica)
ATTCTCTTGTCTTATTGTATCCTTGAATTATTTATTTTCATACACATTGT
ATAAAAATGCAGGATCACATGACGGCATTTCCCAAAAGCGAATGGAAACT
GCGTTTTTATCAATCAATCCTACTGTCGAGCGTATGTATAATGATGCTGG
AAAGTCGCGAAAGGTTAAAAATGGCTGACTTCACAATTTCTGGTATTAAA
AATAATGACCTTCGAAACCCTGCTCGGGGAGATGAAAATTCCGAGGTGGA
ACAGCACGCTTATGGTTTTCGAACGCTGATTGATGAGTATCGTACTCTCT
GGACCGCGGGGTGGAACGCGCGATACGCCAAATACTACCTACCGGTGCCA
CCAAAAGTAACGTGGGCACTGGAGGCTGAGGACATTGTTGAGAGAGAGTA
TCGTCGTTTGCATTTCCCTGCCCACTGCAGCGATGTCAATGGTAAGAGGG
GTTGGAACAAAGGTATATATAATAATGGAAAGAAAATCCCATATCCATCT
GCATTCGCCCCGTATAGGGTGGCTGGTTGTCAATGCATACAATTGGGGCG
TTATGTCGGCGATGCGGGACTATCAATCTGATATTCTGCGAGCCTTGGCC
ATGAACTACACAGTAGTGCATCAAGGAGTATACAATTTGTGTCCTTCAAA
TCCGCAGCAATTTTTAGACTGTTTTTGGGAGGACTTGAATGCCTGTCAAT
CTGAGTTTCCTTCCCTTTTAAGCGTTCCCAGAATAAACCAACCCCAGGAA
ATTACCACATCGGCAGTGTTCCATGAACAATTCCCGCATTGGCTGTGGAA
TCTATTGGTTGACAAGGGGGCCATACACCTACAGCATGGACTGACGGGTG
CAACACTGACGGAAGAGGACATTGTGGATGAGGATCAATATCTTCAACTC
AAGCTATCTGTGTTAAGAGCAATTCTTAGCAAAAGAATCTTCAAGCCGAG
GAAGCATATCCAGCGAAAGACTTTGGCGATGCTTAAGTCGTGGAGATCGA
ATGGAAGCTACGCAAATACATCCGAAAAAGGCGTAGTGATTCACATCCGT
CGCACTGATAAGATGAGTGACTTAGGGGCTCATTGGCACTATATCGACTT
TGAGTCCACTGCACACTTAGGGCGCCTAGTTCAGACGATGGAAAATATGA
TCAACAGTACTTTCCAGCATTTTTTTGTCATGTCCGATGACCCCATCATG
CAAAAGCGTGGTACCAAGGAGCTTGCTTCCTTTTTCCAGGCCAATCCTTC
AAATCTTGTTAGTACCGAGCTCTGCGATCTGTTGGGAGCCAATCGGTTGG
AGTACGACGGCCACGAATCGCTTGCGGCAGCTCACCGTCACCAGCTATAT
GTACGTACACTAGCGTTGGACCGATGCTTTGCGTGACCACTATCTCTAAT
TTTGATTTCTTGCAATACAGGATATTGTTGTCGCAGAAATGTACGCCGCT
ATCGAAGTTTCTCAGTACATCATTGGGTCTGGTTCCTGTGCCGTTAGCCA
GTTCATGGCTCTTAACATTGGGGCAAGACACCGCGTCGGTAGGTCGGATA
AATATTTACTTGCCACTCTTCTCATGTACGTAACTCCACTTTTTCTTCGT
CCTACAGAACCAGGCCTTGTAGCTCTTTGGGAGGAAGACTTAATCATAAA
GGAATGTCGCTTGCTTCTTCATCAGCGAATGAGTTTGCACAAACCGTGTA
ACGCTTCATCGTACTTGGAGCGGTCAAGCAGCAAACCCTTATTTCAAACG
TTCTTAGACGGGCAATGGAATGACAAGACATGCCTCCAATTCTTGCCCCC
CTTGCCAAACTGTTTTGGTGATGCAGGATGAGAGGGAAACATCGACTTAA
ACAATGATATGGCTCAAAACATTGCTTCTACCCACTCCCGCTAAGAGCAT
TAGATAAGATGATTAGATCCAACACATTATTAAAAATGCGGGGCAA
back to top

Coding sequence (CDS) from alignment at chr30:9452..11397+

>NO30G00030.4 ID=NO30G00030.4|Name=NO30G00030.4|organism=Nannochloropsis oceanica|type=CDS|length=1329bp|location=Sequence derived from alignment at chr30:9452..11397+ (Nannochloropsis oceanica)
ATGTCAATGGTAAGAGGGGTTGGAACAAAGGTATATATAATAATGGAAAG
AAAATCCCATATCCATCTGCATTCGCCCCGTATAGGGTGGCTGGTTGTCA
ATGCATACAATTGGGGCGTTATGTCGGCGATGCGGGACTATCAATCTGAT
ATTCTGCGAGCCTTGGCCATGAACTACACAGTAGTGCATCAAGGAGTATA
CAATTTGTGTCCTTCAAATCCGCAGCAATTTTTAGACTGTTTTTGGGAGG
ACTTGAATGCCTGTCAATCTGAGTTTCCTTCCCTTTTAAGCGTTCCCAGA
ATAAACCAACCCCAGGAAATTACCACATCGGCAGTGTTCCATGAACAATT
CCCGCATTGGCTGTGGAATCTATTGGTTGACAAGGGGGCCATACACCTAC
AGCATGGACTGACGGGTGCAACACTGACGGAAGAGGACATTGTGGATGAG
GATCAATATCTTCAACTCAAGCTATCTGTGTTAAGAGCAATTCTTAGCAA
AAGAATCTTCAAGCCGAGGAAGCATATCCAGCGAAAGACTTTGGCGATGC
TTAAGTCGTGGAGATCGAATGGAAGCTACGCAAATACATCCGAAAAAGGC
GTAGTGATTCACATCCGTCGCACTGATAAGATGAGTGACTTAGGGGCTCA
TTGGCACTATATCGACTTTGAGTCCACTGCACACTTAGGGCGCCTAGTTC
AGACGATGGAAAATATGATCAACAGTACTTTCCAGCATTTTTTTGTCATG
TCCGATGACCCCATCATGCAAAAGCGTGGTACCAAGGAGCTTGCTTCCTT
TTTCCAGGCCAATCCTTCAAATCTTGTTAGTACCGAGCTCTGCGATCTGT
TGGGAGCCAATCGGTTGGAGTACGACGGCCACGAATCGCTTGCGGCAGCT
CACCGTCACCAGCTATATGATATTGTTGTCGCAGAAATGTACGCCGCTAT
CGAAGTTTCTCAGTACATCATTGGGTCTGGTTCCTGTGCCGTTAGCCAGT
TCATGGCTCTTAACATTGGGGCAAGACACCGCGTCGGTAGGTCGGATAAA
TATTTACTTGCCACTCTTCTCATGTACGTAACTCCACTTTTTCTTCGTCC
TACAGAACCAGGCCTTGTAGCTCTTTGGGAGGAAGACTTAATCATAAAGG
AATGTCGCTTGCTTCTTCATCAGCGAATGAGTTTGCACAAACCGTGTAAC
GCTTCATCGTACTTGGAGCGGTCAAGCAGCAAACCCTTATTTCAAACGTT
CTTAGACGGGCAATGGAATGACAAGACATGCCTCCAATTCTTGCCCCCCT
TGCCAAACTGTTTTGGTGATGCAGGATGA
back to top
Synonyms
Publications